mRNA_H-elongata_contig173227.4491.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig173227.4491.1
Unique NamemRNA_H-elongata_contig173227.4491.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A6H5L6G0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6G0_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 7.870e-31
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 1
Query:    1 EEGMLREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKVSG 210
            E  ML+ FPIYVCVPE+EVA+VIDSCP +K+EDLVF+ SGCLEPLLKSRG+CR EQTQATL+FSV+K+ G
Sbjct:  152 ETSMLQNFPIYVCVPEEEVAAVIDSCPDDKKEDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDKLGG 221          
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A7S0N4Z7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N4Z7_9CRYP)

HSP 1 Score: 85.1 bits (209), Expect = 1.780e-19
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   13 LREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKV 204
            +  FPIYVCVP D+V  VI SCP +K +DLVF+Q+G +EPLLK   LC  +QTQATL+F+V K 
Sbjct:   54 VTSFPIYVCVPNDDVEGVIKSCPKDKLDDLVFVQNGMMEPLLKKYALCSVDQTQATLYFTVFKA 117          
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A6U2BD26_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2BD26_HEMAN)

HSP 1 Score: 86.7 bits (213), Expect = 2.100e-18
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   19 EFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKV 204
            EFP+YVCVPEDEV SVI SCP EK +DLVF+Q G +E LLK  GLC NE TQA L F++  V
Sbjct:  143 EFPVYVCVPEDEVESVIRSCPKEKVDDLVFVQGGNIEMLLKKYGLCGNENTQAVLNFNIMSV 204          
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: W7U1I1_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1I1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.550e-15
Identity = 38/61 (62.30%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   13 LREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSV 195
            L  FPIYVCVPE EV SVI  CP EKR DLVF+QS CLE LLK  GL   + TQ   +FS+
Sbjct:  148 LNMFPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTTQCLPYFSI 208          
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A836CIC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIC7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.860e-15
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    4 EGMLRE-FPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKVS 207
            EG  R  FPIYV V E ++ +V+ +CP +KR DLVFLQ GC+EPLLK  G C  +QTQA L+++ E  S
Sbjct:   67 EGNARSSFPIYVAVRERDLEAVLKACPDDKRADLVFLQGGCVEPLLKRYGACSKDQTQAVLWWTFEAGS 135          
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A7S0EQY8_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EQY8_9CRYP)

HSP 1 Score: 76.6 bits (187), Expect = 7.020e-15
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   13 LREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKVSG 210
            L  FPIYVCVP  E+  VI SCPS K +DLVF+Q G +EP+LK   LC NE TQ   +F++    G
Sbjct:  101 LDSFPIYVCVPNSELEGVIRSCPSSKLDDLVFVQDGMIEPILKKYALCGNENTQMLPYFTLFSKGG 166          
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A7S4NNE9_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NNE9_GUITH)

HSP 1 Score: 75.5 bits (184), Expect = 9.560e-15
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   13 LREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKVSG 210
            L  FP+YVCVP  E+ +VI SCP  K +DLVF+Q G +EP+LK   LC NE TQ   +F++    G
Sbjct:   25 LESFPVYVCVPTSELENVIRSCPQSKLDDLVFVQDGMIEPILKKYALCGNENTQMLPYFTLFSKGG 90          
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A7S2S616_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S616_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.830e-15
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 EEGMLREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLF 186
            E G    +PIY+C   D VA+++++CP+E+R+DLVFLQ G LEP+LKS  LC  E TQA L+
Sbjct:  160 ELGGAASYPIYLCCSADTVAAILEACPAERRDDLVFLQRGFLEPVLKSMALCGAENTQAVLY 221          
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: L1JQC7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQC7_GUITC)

HSP 1 Score: 75.5 bits (184), Expect = 1.990e-14
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   13 LREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKVSG 210
            L  FP+YVCVP  E+ +VI SCP  K +DLVF+Q G +EP+LK   LC NE TQ   +F++    G
Sbjct:  110 LESFPVYVCVPTSELENVIRSCPQSKLDDLVFVQDGMIEPILKKYALCGNENTQMLPYFTLFSKGG 175          
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A7R9U6V6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6V6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.930e-13
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   13 LREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKVSG 210
            L +FPIY CV   ++  +I  CP  KR DLVFLQ+G +EPLLK  GLC    TQA  +F    +SG
Sbjct:  111 LTDFPIYACVAPMDLEQLILDCPEAKRPDLVFLQTGMMEPLLKRYGLCGKRNTQALCYFEFHPMSG 176          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6G0_9PHAE7.870e-3175.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0N4Z7_9CRYP1.780e-1959.38Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A6U2BD26_HEMAN2.100e-1866.13Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
W7U1I1_9STRA2.550e-1562.30Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A836CIC7_9STRA5.860e-1553.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0EQY8_9CRYP7.020e-1553.03Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4NNE9_GUITH9.560e-1550.00Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S2S616_9STRA9.830e-1553.23Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
L1JQC7_GUITC1.990e-1450.00Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7R9U6V6_9STRA4.930e-1350.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig173227contigH-elongata_contig173227:942..1154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.1e-24
Seed eggNOG ortholog2880.D8LT31
EggNOG OGs2BI3D@1,2S1DD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size204
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.87977-CDS-H-elongata_contig173227:941..11451622930007.87977-CDS-H-elongata_contig173227:941..1145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173227 942..1145 -
1691679243.6501038-CDS-H-elongata_contig173227:941..11451691679243.6501038-CDS-H-elongata_contig173227:941..1145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173227 942..1145 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.8904686-UTR-H-elongata_contig173227:1145..11541622930007.8904686-UTR-H-elongata_contig173227:1145..1154Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig173227 1146..1154 -
1691679243.6613774-UTR-H-elongata_contig173227:1145..11541691679243.6613774-UTR-H-elongata_contig173227:1145..1154Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig173227 1146..1154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig173227.4491.1prot_H-elongata_contig173227.4491.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig173227 942..1145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig173227.4491.1

>prot_H-elongata_contig173227.4491.1 ID=prot_H-elongata_contig173227.4491.1|Name=mRNA_H-elongata_contig173227.4491.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MLREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCR
NEQTQATLFFSVEKVSG*
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mRNA from alignment at H-elongata_contig173227:942..1154-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig173227.4491.1 ID=mRNA_H-elongata_contig173227.4491.1|Name=mRNA_H-elongata_contig173227.4491.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig173227:942..1154- (Himanthalia elongata Himel1 dioecious)
GAGGAGGGGATGCTCCGGGAGTTCCCGATATACGTGTGCGTTCCCGAGGA CGAAGTCGCTTCGGTGATCGATTCCTGCCCCTCCGAGAAAAGGGAAGATC TCGTCTTCCTGCAGTCCGGGTGCCTGGAGCCGCTCCTCAAGTCCCGGGGC CTCTGTCGCAACGAGCAGACCCAGGCGACCTTGTTCTTCTCGGTTGAGAA GGTGAGTGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig173227:942..1154-

>mRNA_H-elongata_contig173227.4491.1 ID=mRNA_H-elongata_contig173227.4491.1|Name=mRNA_H-elongata_contig173227.4491.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig173227:942..1154- (Himanthalia elongata Himel1 dioecious)
ATGCTCCGGGAGTTCCCGATATACGTGTGCGTTCCCGAGGACGAAGTCGC
TTCGGTGATCGATTCCTGCCCCTCCGAGAAAAGGGAAGATCTCGTCTTCC
TGCAGTCCGGGTGCCTGGAGCCGCTCCTCAAGTCCCGGGGCCTCTGTCGC
AACGAGCAGACCCAGGCGACCTTGTTCTTCTCGGTTGAGAAGGTGAGTGG
GTAGATGCTCCGGGAGTTCCCGATATACGTGTGCGTTCCCGAGGACGAAG
TCGCTTCGGTGATCGATTCCTGCCCCTCCGAGAAAAGGGAAGATCTCGTC
TTCCTGCAGTCCGGGTGCCTGGAGCCGCTCCTCAAGTCCCGGGGCCTCTG
TCGCAACGAGCAGACCCAGGCGACCTTGTTCTTCTCGGTTGAGAAGGTGA
GTGGGTAG
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