mRNA_H-elongata_contig17321.4490.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17321.4490.1
Unique NamemRNA_H-elongata_contig17321.4490.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: A0A6H5KT71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT71_9PHAE)

HSP 1 Score: 429 bits (1102), Expect = 6.460e-146
Identity = 216/256 (84.38%), Postives = 237/256 (92.58%), Query Frame = 3
Query:  291 SMQGSVSLADTANRRSIFRESSKPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILLI 1058
            SMQG+V L D+A RRS+F +  KPLALLHETIN+M AGRFPEGQTEIPFEAEV+GIDGMPLLNSYSGVYLSIGYHIS KIERG+MR +LSKK+EF++EVPGEA +P+TEVPFEIT ETLEYAPKRYGR RRLRPFRV+GRL+ A VSTS+PLTGEVVVEESE PIKSLEVQLVRVETV QA GQLREATEIQNLQIG+GDVCRGL IPIYMVLPRLFSCPTM+T RFRVEFELNVI+CFAEA+GYTATQNFQILL+
Sbjct:   47 SMQGNVCLFDSAERRSLFSDGPKPLALLHETINIMGAGRFPEGQTEIPFEAEVRGIDGMPLLNSYSGVYLSIGYHISAKIERGMMRNDLSKKIEFMVEVPGEAASPATEVPFEITPETLEYAPKRYGRQRRLRPFRVSGRLYSATVSTSQPLTGEVVVEESERPIKSLEVQLVRVETVSQAQGQLREATEIQNLQIGEGDVCRGLVIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 302          
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: D8LQ86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ86_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 4.690e-109
Identity = 168/193 (87.05%), Postives = 181/193 (93.78%), Query Frame = 3
Query:  480 SYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILLI 1058
            SYSGVYLSIGYHIS KIERG+MR +LSKK+EF++EVPGEA +P+TEVPFEIT ETLEYAPKRYGR RRLRPFRV+GRLH A VSTSRPLTGEVVVEESE PIKSLEVQLVRVETV QA GQLREATEIQNLQIG+GDVCRGL IPIYMVLPRLFSCPTM+T RFRVEFELNVI+CFAEA+GYTATQNFQILL+
Sbjct:   47 SYSGVYLSIGYHISAKIERGMMRNDLSKKIEFMVEVPGEAASPATEVPFEITPETLEYAPKRYGRQRRLRPFRVSGRLHSATVSTSRPLTGEVVVEESERPIKSLEVQLVRVETVSQAQGQLREATEIQNLQIGEGDVCRGLVIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 239          
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: K3WEV9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEV9_GLOUD)

HSP 1 Score: 219 bits (559), Expect = 2.560e-64
Identity = 126/272 (46.32%), Postives = 166/272 (61.03%), Query Frame = 3
Query:  255 VDYPANNAHGGRSM--QGSVSL---ADTANRRSIFRESSKPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILL 1055
            +  P   AH G +M  +GS  L   A +A     F  +  PL L++  I +  AG+ P G T+IPFE E+ G D  PL  +Y GVY+S+ Y I     RG+M+  L K MEFI+EVP   P       F IT ETLE   ++   L  +  F +TGR+H      + P TGE+VVE +  PIKS+E+QL+RVE+V  A G  R+ATEIQN+QIG GDVCR LAIPIYM+ PRLF+CPTM+  +F+VEFE N+++ F   DG   T+NF I L
Sbjct:   28 ISSPKGFAHQGIAMKVEGSARLQVSAKSAGLFDAFYSAVAPLQLVYLHIPIAPAGKVPFGVTKIPFEFELVGNDAQPLFETYHGVYVSVKYEIVCDCVRGIMKSNLHKTMEFIVEVPLREPLRDAPEEFSITPETLENVRRKS--LTTIPDFHITGRIHRTNCPVNLPFTGEIVVEHASSPIKSVELQLIRVESVAHAEGVARDATEIQNVQIGWGDVCRQLAIPIYMIFPRLFTCPTMLAAKFKVEFETNIVVLFE--DGNMITENFPITL 295          
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: A0A8K1FJJ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJJ2_PYTOL)

HSP 1 Score: 218 bits (555), Expect = 9.730e-64
Identity = 122/272 (44.85%), Postives = 170/272 (62.50%), Query Frame = 3
Query:  255 VDYPANNAHGGRSM--QGSVSLADTANRRSIFRE---SSKPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILL 1055
            +  P   AH G SM  +GS  L  +A    +F     +  P+ L++  I V  AG+ P G ++ PFE E+ GIDG  L  +Y GVY+S+ Y I+    RGLM+  L K +EFI+EVP + P       F IT  +LE   +++  L  +  F+V+GR+H      + P TGE+V+E +  PIKS+E+QL+RVE+V  + G  R+ATEIQN+QIG GDVCR ++IPIYM+ PRLF+CPTM+T RF+VEFE NV++ F   DG   T+NF I L
Sbjct:   27 ISSPKGFAHQGISMKVEGSARLQLSAKSTGLFESFYNTVTPMDLVYFHIPVAPAGKVPLGISKFPFEFELTGIDGQQLFETYHGVYVSVKYEITCSCVRGLMKSTLQKTLEFIVEVPLQEPLHDAPEEFNITPNSLENVRRKH--LSTVPTFQVSGRIHRTNCPVNLPFTGEIVIEHASAPIKSIELQLIRVESVAHSEGVARDATEIQNVQIGWGDVCREMSIPIYMIFPRLFTCPTMLTPRFKVEFETNVVVLFE--DGNMITENFPITL 294          
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: F0YB46_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB46_AURAN)

HSP 1 Score: 218 bits (555), Expect = 1.350e-63
Identity = 132/303 (43.56%), Postives = 179/303 (59.08%), Query Frame = 3
Query:  207 SETSHELRWLMLMRPDVDYPANN--------------AHGGRSMQ--GSVSLADTANRRSIFRESS--KPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVE--QAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILL 1055
            SE  H    + L R D  Y   +              AH G SM+  GS  L  +     +F   S  +P  LL   I +   GRFP+G TEIPFE E++ + G  L  SY GVY+++ Y ++ + +RG+M K L + +EFI+EVP +   P+    F IT E+LE    R   +  +  F+V+G+LH  +   + P TGE VVEES+  +KS+E+QLVR ETV   ++G   REATEIQN+QI +GDVCR L IPIYM+ PRLF+CPTMIT  F+VEFE+N+I+ F   DGY  T+NF I L
Sbjct:    5 SEIEHSTLEIALRRVDRIYRPGDVVDGKLIVSARKGWAHKGISMKVTGSAQLQLSHRSMGLFESVSSVRPRELLRTQIELTPPGRFPDGVTEIPFEFELQALAGEALHESYHGVYINVCYTMACECKRGVMSKPLERDIEFIVEVPSKESPPADPRAFSITPESLENV--RASSVAAIPRFKVSGKLHRQSCPINLPFTGEFVVEESQASVKSIELQLVRSETVRHPESGNTAREATEIQNIQIAEGDVCRNLVIPIYMIFPRLFTCPTMITDDFKVEFEVNLIVIFG--DGYMITENFPIKL 303          
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: A0A7S2MRC8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MRC8_9STRA)

HSP 1 Score: 217 bits (552), Expect = 3.650e-63
Identity = 122/271 (45.02%), Postives = 174/271 (64.21%), Query Frame = 3
Query:  255 VDYPANNAHGGRSMQ--GSVSLADTANRRSIFRESS--KPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILL 1055
            +   A  +H G  M   G   L  +A    +F   S  KPL L+ +  +++++G+ P+G TEIPFE ++   +G  L  SY GVY+++ Y I+V  ERG  +K L + +EF++EVP  A + +    FEIT E+LE        L ++  F+++GRL       + P TGEV +E S+ P+KS+E+QLVRVETV+Q G  +REATEIQN+QIGDGDVCR L +P+YM+ PRLF+CPTM+T  F+VEFE+N+I+ F   DGY  T+NF I L
Sbjct:   39 ISSKAGWSHQGIMMHVAGHAKLQLSARSVGLFESMSNIKPLCLMDQNFDILDSGKVPDGVTEIPFEFQLPK-EG--LHESYHGVYINVEYKINVSCERGFPKKALHRNIEFVVEVPEAAKSETEPERFEITPESLENV--NASSLSKIPIFKISGRLFHKLCPINLPFTGEVTIEASQAPVKSIELQLVRVETVKQMGKTVREATEIQNIQIGDGDVCRNLVMPLYMIFPRLFTCPTMLTDSFQVEFEVNLIVVFG--DGYMVTENFPIEL 302          
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: W2RB33_PHYPN (Uncharacterized protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=W2RB33_PHYPN)

HSP 1 Score: 214 bits (545), Expect = 3.030e-62
Identity = 120/272 (44.12%), Postives = 170/272 (62.50%), Query Frame = 3
Query:  255 VDYPANNAHGGRSM--QGSVSL---ADTANRRSIFRESSKPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILL 1055
            +  P   +H G +M  +GS  +     +A     F  +  PL L++  + V  AG+ P G T+ PFE E++G DG  LL +Y GVY+S+ Y I     RG+M+ +L K +EF++EVP   P P +   F IT E+LE    R   L  +  F +TG++H      + P TGE+++EE++ PIKS+E+QL+RVE+V  A G  R+ATEIQN+QIG GDVCR +AIPIYM+ PRLF+CPTM+T  F+VEFE NV++ F   +G   T+NF I L
Sbjct:   28 ISSPKGFSHQGLAMKVEGSARMQLSTKSAGLFDSFYNNVSPLELVYFHLPVAAAGKVPPGITKFPFEFELQGNDGQELLETYHGVYVSVKYEIICDCIRGIMKNKLHKTLEFVVEVPLREPLPDSPEEFHITPESLENV--RPQSLSAMPYFHITGKVHRTNCPVNLPFTGEIIIEEAKSPIKSVELQLIRVESVAHAEGIARDATEIQNVQIGWGDVCRQMAIPIYMIFPRLFTCPTMLTPAFKVEFETNVVVLFE--NGNMITENFPITL 295          
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: A0A0W8CRJ7_PHYNI (Down syndrome critical region protein 3 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CRJ7_PHYNI)

HSP 1 Score: 214 bits (544), Expect = 4.260e-62
Identity = 120/272 (44.12%), Postives = 170/272 (62.50%), Query Frame = 3
Query:  255 VDYPANNAHGGRSM--QGSVSL---ADTANRRSIFRESSKPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILL 1055
            +  P   +H G +M  +GS  +     +A     F  +  PL L++  + V  AG+ P G T+ PFE E++G DG  LL +Y GVY+S+ Y I     RG+M+ +L K +EF++EVP   P P +   F IT E+LE    R   L  +  F +TG++H      + P TGE+++EE++ PIKS+E+QL+RVE+V  A G  R+ATEIQN+QIG GDVCR +AIPIYM+ PRLF+CPTM+T  F+VEFE NV++ F   +G   T+NF I L
Sbjct:   28 ISSPKGFSHQGLAMKVEGSARMQLSTKSAGLFDSFYNNVSPLELVYFHLPVAAAGKVPPGITKFPFEFELQGNDGQELLETYHGVYVSVKYEIICDCIRGIMKNKLHKTLEFVVEVPLXEPLPDSPEEFHITPESLENV--RPQSLSAMPYFHITGKVHRTNCPVNLPFTGEIIIEEAKSPIKSVELQLIRVESVAHAEGIARDATEIQNVQIGWGDVCRQMAIPIYMIFPRLFTCPTMLTPAFKVEFETNVVVLFE--NGNMITENFPITL 295          
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: A0A7S2FUK8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUK8_9STRA)

HSP 1 Score: 210 bits (535), Expect = 9.630e-62
Identity = 115/224 (51.34%), Postives = 156/224 (69.64%), Query Frame = 3
Query:  390 VMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQ--AGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILL 1055
            V++AGR P+G TE PFE ++   +G  L  SY GVY+++ Y I+V  ERG+M+K L + +EFI+EVP  A   +    FEIT E+LE    R   L ++  F+++GRL       + P TGEV +E S+ P+KS+E+QLVRVETV+   +G   REATEIQN+QIGDGDVCR L IP+YM+ PRLF+CPTM+T  F+VEFE+N+I+ FA  DGY  T+NF I+L
Sbjct:    4 VLDAGRLPDGTTETPFEFQLPS-EG--LHESYHGVYINVEYKINVDCERGVMKKALHRSIEFIVEVPENAKHETEPERFEITPESLENV--RSNTLDQIPKFKISGRLFHKLCPINLPFTGEVTIEASQAPVKSVELQLVRVETVKHPDSGNTAREATEIQNIQIGDGDVCRNLVIPLYMIFPRLFTCPTMLTELFKVEFEVNLIVVFA--DGYMVTENFPIVL 220          
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Match: R7U226_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7U226_CAPTE)

HSP 1 Score: 210 bits (534), Expect = 1.240e-60
Identity = 119/264 (45.08%), Postives = 171/264 (64.77%), Query Frame = 3
Query:  291 SMQGSVSLADTANRRSIFR---ESSKPLALLHETINVMEAGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMRKELSKKMEFIIEVPGE----APTPSTEVPFEITHETLEYAPKRYGRLRRLRP-FRVTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLREATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVIICFAEADGYTATQNFQILLI 1058
            +M+GSV+L  +A    +F     S KP+ L++ TI+V + G+ P G+TEIPFE  +K     PL  +Y GV+++I Y + V ++R L+ K+L K+ EFI+E   +    AP  +T   F IT +TL+   +++     + P F V GRL       S P TGE+VV+ S  PIKS+EVQLVRVET   A G  ++ATEIQN+Q+ DGDVCRG+AIPIYM+ PRLF+CPT+ T+ F+VEFE+N++I F   D +  T+NF + L+
Sbjct:   41 TMEGSVNLQLSAKSVGLFEAFYNSLKPIQLINYTIDVAKPGKLPNGRTEIPFEIPLKTKGNKPLYETYHGVFVNIQYLLKVDMKRSLLNKDLQKQCEFIVEYKEQKEKVAPKKAT---FSITPDTLQNIKEKH-----IVPNFEVRGRLDSTICRLSDPFTGELVVDSSVAPIKSIEVQLVRVETCGCAEGYAKDATEIQNIQVADGDVCRGMAIPIYMIFPRLFTCPTLTTSNFKVEFEINIVIVFT--DDHLVTENFPVTLL 294          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17321.4490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT71_9PHAE6.460e-14684.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ86_ECTSI4.690e-10987.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3WEV9_GLOUD2.560e-6446.32Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1FJJ2_PYTOL9.730e-6444.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0YB46_AURAN1.350e-6343.56Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2MRC8_9STRA3.650e-6345.02Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W2RB33_PHYPN3.030e-6244.12Uncharacterized protein n=23 Tax=Peronosporaceae T... [more]
A0A0W8CRJ7_PHYNI4.260e-6244.12Down syndrome critical region protein 3 n=7 Tax=Ph... [more]
A0A7S2FUK8_9STRA9.630e-6251.34Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
R7U226_CAPTE1.240e-6045.08Uncharacterized protein n=1 Tax=Capitella teleta T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17321contigH-elongata_contig17321:326..5236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.9
Seed ortholog evalue2.1e-89
Seed eggNOG ortholog2880.D8LQ86
Preferred nameDSCR3
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0030904,GO:0030906,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042147,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098796
EggNOG free text desc.protein transporter activity
EggNOG OGsKOG2717@1,KOG2717@2759
COG Functional cat.DT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVacuolar protein sorting protein 26 related
Ec32 orthologEc-26_005760.2
Exons6
Model size1491
Cds size963
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17321.4490.1prot_H-elongata_contig17321.4490.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17321 424..4806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.708226-UTR-H-elongata_contig17321:325..4231622930007.708226-UTR-H-elongata_contig17321:325..423Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17321 326..423 +
1691679243.561121-UTR-H-elongata_contig17321:325..4231691679243.561121-UTR-H-elongata_contig17321:325..423Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17321 326..423 +
1622930007.8393016-UTR-H-elongata_contig17321:4806..52361622930007.8393016-UTR-H-elongata_contig17321:4806..5236Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17321 4807..5236 +
1691679243.6410112-UTR-H-elongata_contig17321:4806..52361691679243.6410112-UTR-H-elongata_contig17321:4806..5236Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17321 4807..5236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.7342734-CDS-H-elongata_contig17321:423..7921622930007.7342734-CDS-H-elongata_contig17321:423..792Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17321 424..792 +
1691679243.5824583-CDS-H-elongata_contig17321:423..7921691679243.5824583-CDS-H-elongata_contig17321:423..792Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17321 424..792 +
1622930007.750486-CDS-H-elongata_contig17321:1456..14961622930007.750486-CDS-H-elongata_contig17321:1456..1496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17321 1457..1496 +
1691679243.5972552-CDS-H-elongata_contig17321:1456..14961691679243.5972552-CDS-H-elongata_contig17321:1456..1496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17321 1457..1496 +
1622930007.7701275-CDS-H-elongata_contig17321:2569..26411622930007.7701275-CDS-H-elongata_contig17321:2569..2641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17321 2570..2641 +
1691679243.6053479-CDS-H-elongata_contig17321:2569..26411691679243.6053479-CDS-H-elongata_contig17321:2569..2641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17321 2570..2641 +
1622930007.7852442-CDS-H-elongata_contig17321:2897..31061622930007.7852442-CDS-H-elongata_contig17321:2897..3106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17321 2898..3106 +
1691679243.6128361-CDS-H-elongata_contig17321:2897..31061691679243.6128361-CDS-H-elongata_contig17321:2897..3106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17321 2898..3106 +
1622930007.8044217-CDS-H-elongata_contig17321:3658..37001622930007.8044217-CDS-H-elongata_contig17321:3658..3700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17321 3659..3700 +
1691679243.6214364-CDS-H-elongata_contig17321:3658..37001691679243.6214364-CDS-H-elongata_contig17321:3658..3700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17321 3659..3700 +
1622930007.8186688-CDS-H-elongata_contig17321:4575..48061622930007.8186688-CDS-H-elongata_contig17321:4575..4806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17321 4576..4806 +
1691679243.6316574-CDS-H-elongata_contig17321:4575..48061691679243.6316574-CDS-H-elongata_contig17321:4575..4806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17321 4576..4806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17321.4490.1

>prot_H-elongata_contig17321.4490.1 ID=prot_H-elongata_contig17321.4490.1|Name=mRNA_H-elongata_contig17321.4490.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=321bp
MVHSVYLAKEGFCTMNPVDVELKRFVPPIPPPVFHHSETSHELRWLMLMR
PDVDYPANNAHGGRSMQGSVSLADTANRRSIFRESSKPLALLHETINVME
AGRFPEGQTEIPFEAEVKGIDGMPLLNSYSGVYLSIGYHISVKIERGLMR
KELSKKMEFIIEVPGEAPTPSTEVPFEITHETLEYAPKRYGRLRRLRPFR
VTGRLHDAAVSTSRPLTGEVVVEESECPIKSLEVQLVRVETVEQAGGQLR
EATEIQNLQIGDGDVCRGLAIPIYMVLPRLFSCPTMITTRFRVEFELNVI
ICFAEADGYTATQNFQILLI*
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mRNA from alignment at H-elongata_contig17321:326..5236+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17321.4490.1 ID=mRNA_H-elongata_contig17321.4490.1|Name=mRNA_H-elongata_contig17321.4490.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4911bp|location=Sequence derived from alignment at H-elongata_contig17321:326..5236+ (Himanthalia elongata Himel1 dioecious)
GCTCGAGAATAGCACATATAAATGCAAATGCCCACGACAATGCTTCACGC CTTTTTTTCACAAGCAAATTTCCACACCAGATACAAGCGGTCGCTACAAT GGTACATTCAGTGTATCTCGCGAAAGAGGGATTCTGCACCATGAATCCCG TGGACGTCGAGTTGAAACGATTTGTCCCTCCCATCCCCCCCCCTGTCTTC CATCACTCCGAAACGTCCCACGAACTACGATGGTTGATGCTGATGCGCCC TGACGTTGATTATCCCGCGAACAATGCGCATGGCGGCCGTAGCATGCAGG GCAGCGTTAGCCTGGCGGACACCGCGAACCGCCGGAGCATATTCCGCGAG TCGTCCAAGCCCCTGGCGCTGCTCCACGAGACCATCAACGTCATGGAAGC CGGGCGGTTCCCCGAGGGGCAGACGGAAATACCTTTCGAGGCGGAGGTTA AAGGCATCGACGGAATGGTGCGGAACGAAGGGGAGCAGTGCAGCTATGTT TTAAAAAACGCCAGTGCATTCGCAGTAACGCATGTGCGGTATCGTGCGTC CTACGCTCACACCACACAGCGTCCACCCTTTGAATTGCCGATGGGGATTA GCCCACAACCTGTTGCATCAGACTCTCCACCAGTGTTTGGAACTCTCCGC GAAGCGTGGTTTGGGGTCGAATCGGAGTGTAAAGCTTGTGCGAGGCCTTG CTGGTTTGTTTTTTATACTTTTCGCAATATATGACTGCCTTTGCCTCTCG CTGTTTACAATGTCGTTGGTTTCTCCCCGAGCGCGAACGCGGCGTATCAT CAAAGCCAACCCGACGGTGCTGATAATTCTGACCTCGACGATCGGCTGGG TGATACCCCGGCAAAGCACGGTCAACGTTTATCTAGCATGGGAAGGAATT CCCTTTTGACGACCGCCGTATGGTTTGGTTTCTCCCTAAGCGTGAGCACA AAATCACAAAGTATTTCTTGCATGGGAAAGGCTCACTACCCCCCCTCCTT TCCCTTTCGTGGACATGGACATGAAGCGATTACCGCCCCCCTCGCCTGTG CGTGACGCCTCTCCGATATTTTTCGTTCTGTCACTAATCGACGGTCGGTT CTGCCGATCGCTATTGAACGTGCACGGCCAGCCTCTGCTGAACAGCTACT CGGGGGTGTACTTGTCAATCGGTGAGCGACGAGGACGCTTGAGTTGGAGC ACTCGATCGAGGGCGTTGAAAAGCCCTCATCTACCTTAGAACTATGAGAG TACCCCGCCAGGTTTATTCACGAACAAGATATAGTCGATGTATCACACCT ATTCCGTTGTTTGTCTAGTGTGCGTGTGGCGCTTATGTGTTCGCGCGGAG ATCAAAGCCCCTTTGTTGTACTTGGAATATGTTGCTGTTTGTCACACATT TAGCAAAAGATCAAGCGGATTTGGTTGCCTTCTGCTCGTGGTCAGCTGAA CAGGGAAAATAATTTTCCCTGTCCCCGTTAAGTATAATATAGCGGTAAGG ATAACGCCTGCTGAATACCCGGTGTATAGAGTGTCCTGTCTCAAATCAAT CCATGAACTGTCCGATTTGGCGTTCCAAGGTTAAATGTGATGAATAAAAG CTTGTTACCATCCTTTTGAAACGTAGACTGGTCGGCGAAAACCCCGCGTA TCACTCCGTTACGGCATTGTTGGGATACGTGGTCTATATCCGTTAGAATA TGACACGCGTTCGACATACTGGAAGTTCACCTCACCCTCTCGAGATGAAA TATCTTCCAGCGTCTTTTGGCAACAATGATAAGTCGTTTGCAGCAATTCT GTAATCTTGGAAGGTAACACGCCTGCGCCGCGTGACCTCACAGAGGATCT CGTAGAGGCAACATATACGGCAGTTGAGTAATGTATTTAATTTTATTTGT GTTATGGAAACCCATCGGTGAAAAAAAATGCGATATACTTCAGTCAATCG TCCAATTAGCGCCAGCCGGCCAATTAGCGCCAGCCAGCCAATTAGTGTAA AGTCAGTCGGATGGTGTTGCATGCGTGAAGAAAGCGGTTCCTGCCTCGAG AAGATACTTTATCTTACTACACAATTTATGATCATCACCCTTTGTCTTAC GATCATCACCCTTCACTATGTTTTGGTGTTTGTTTGAGACTGAGGTGAGC CCCCCTGGCCGTTTGGAGTCACGACACGTTTTGTGTGTGTGTTTTTTTCG GGGGGGCGCTTTGGGGCCTTTTTTATTCATATCGTACTAAACAGGCTATC ATATCAGCGTCAAGATCGAGCGAGGCTTAATGCGGAAGGAGCTCTCCAAG AAGATGGAATTTATAAGTGAGGGGAGGGGAGGGGATCCTGCCGCTCATGC AGAAGACAAGGCGGGCCATCTCGTTACCATCGCTTTTGTGTCGCCTTGTC CCCCAAGCACACCCTTATTTCTCGTATTTGTATGTTTTCGCGGAATCAAC GCTGTGTGCGATCGTAACAGTCGATAGCCGTGCTCTAGCACTAGTAATAC ACGAAGTTGATCCCGCCGCCGCCGCGTGCCCCACGCAATCGTGTCACAAA AAATGGGCATGGAACTCCTCAGTCGAGGTCCCCGGGGAGGCGCCGACGCC TTCGACGGAGGTGCCGTTTGAGATCACTCACGAGACGCTGGAGTACGCCC CGAAGCGTTACGGAAGGCTCCGACGGTTACGACCGTTTCGCGTGACGGGG AGGCTTCACGACGCGGCGGTTTCCACCAGCCGGCCGTTGACGGGGGAGGT GGTGGTGGAGGAATCGGAGTGCCCGATAAAGGTTGGCGTTCAGGGCTGTT GGGGAGGGGGGGAGAGAAGAGGGGATTCAAGCAGCAGCAGACGGCACGAA AAACATTTGAACACCTTTTGTTAGATCGTGTTTTCTATATCTCACTCATT GGTGGGTCAGCGACGGGTAGCGAGAGAAAAACATTCAGCGGAAAAAAAGC AGCAGCAGCAGTAGCATGCGCTCGTTGTTGCTCGGGAGATATTTCTAGGC CGTTGAAGGGGATCGGGCCGAACCCAACCGAACTTATCCGAACGATAAGC AGCAGCGGAACACAGTCGAGATATATTTATATTAAAAAAACTCCTTGAAC TCATTCCAACCCTCCGAACATCCACACCTTCTTAGCGCCGTGAGGGTTGC AGTCCAGGGTTTTATTAATAGTACATTGTGCGTGATTTAGGAAATGTCAT AAGTTATCATGAGAGACAAGCTTTATTCCCGTTACCCGCTGACGTTTAAC GTGTCTGGCGGGGATTTTCCTGTTTGTGTGTGTGTGTGTGTTGTGTGTGC CTTATGGACCGGACCCCCGTCCGCGGGAGGCAGTCGTTGGAAGTTCAGCT AGTGCGAGTTGAAACGGTCGAACAGGTGAGCGTGTCCGTTCTTGGGGTGG TAGGGGCGTTTACTTACGCTAAACACGTGTTTTATCCAAACGGAGATCTT ATTATTAATAGTCAGACCACGTACCCCGACAATGTCGGGACGGGCGGATA TACCGTAGTGTTTCCGGCCAGTTTTCGTTTCACAAAGATAATGCCAGCTT TAGTGATACTCCTTACGTTGCTACGCCAAATAAGATATGCCACGGGTTAA TAGGACATTGGACACTTGACACACCGGGTAACCAAATATTGCACATTCAG CGGGCAGGAAGTGGGGAAATATTGCGCACCTCCTCTTTTCCCTAGGCACC TTTTGCACAACCGAATGACTTCGAATGCAAGGGCCACTTGGGAAAACGAC TACATCAGTATATGCATATGTTAGCACTTCGTGCTTCGTGGACCACAGAA CAGTGGCAACGGTTTTTGTTTCCCGATTGTTTCGCATTTTTATTATGACG GTGATCAGCCGACCGTTTCACCGCTTTTCTCTCAACCAAAATCGTTAGGG GCCAACCAGCTCTCGTGAACTCCCAACATCGTCCATGGAGAACTCTGCGC ATTCTTCACCCCCATTCTGCAGTGCTTGGGTTTTTATCACACCACACTCT CCTTGGCTTTCCACGGTTGCTTCGATTTTTTTCTTTTTTGTTTTCCCCTC TTTTAACCGCAATGGAACTCGATCTGTTTTTTTACATACTAAATTTAATA TAAAAATTGAAATCCAGTCCCGAAAGGGTTAAACACACACACACACAGAC ACACACACACACTTTCCAATGGTTCGATCAGAAAACGTTTTTATTTTATT TCCATGTTTCCATGCTCTCTTGTTTGTGCTGAAACCTGGCTATTCCACAG GCCGGCGGCCAGCTGCGGGAGGCCACCGAGATTCAAAATCTTCAGATAGG AGATGGCGACGTGTGTCGCGGTCTGGCCATCCCGATCTACATGGTGCTCC CACGGCTCTTTTCTTGCCCAACGATGATCACGACGCGCTTTCGGGTCGAA TTCGAGCTGAACGTTATCATTTGCTTCGCGGAGGCGGACGGATACACCGC GACACAGAATTTCCAGATACTGTTGATTTGAGACCGCAGCGGCGGTTGCA AGCAGGAGTCTTGCTGTCGCTTCCTCCCCTCTTGCTCTTACGCGGTTGTC TGTCGGCTGTCGGCTCGTTCTGGCGATGGCACTTTTTTCGCGCGTAACTC GGGTCGCACGCGAGTAAAAATAAAAATATAGAAAAAAGTATAAGCCTGAG AAAAAAAGCCGAAACGTCAGGGTTTTGTAAAAATATTTGAGGCGTGATGG TTCTTCCGTGTCTTTAGAGTATAAGTGTGTTGTACACAAAAATGAGGCCA CCAAAATAAATGGTGTTATAAACACTGCTGGATGACGGCATTAACAGTCA GGGTGCTGGCATACTTAAGTTAAATGTTTGAGTGCCTTTGTTGTTAGACC ATTTAGACCACGCGTCCTCGGGAGGACGACGGGGGGTGGTGTGGTAAGTT CGAGGCTCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig17321:326..5236+

>mRNA_H-elongata_contig17321.4490.1 ID=mRNA_H-elongata_contig17321.4490.1|Name=mRNA_H-elongata_contig17321.4490.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1926bp|location=Sequence derived from alignment at H-elongata_contig17321:326..5236+ (Himanthalia elongata Himel1 dioecious)
ATGGTACATTCAGTGTATCTCGCGAAAGAGGGATTCTGCACCATGAATCC
CGTGGACGTCGAGTTGAAACGATTTGTCCCTCCCATCCCCCCCCCTGTCT
TCCATCACTCCGAAACGTCCCACGAACTACGATGGTTGATGCTGATGCGC
CCTGACGTTGATTATCCCGCGAACAATGCGCATGGCGGCCGTAGCATGCA
GGGCAGCGTTAGCCTGGCGGACACCGCGAACCGCCGGAGCATATTCCGCG
AGTCGTCCAAGCCCCTGGCGCTGCTCCACGAGACCATCAACGTCATGGAA
GCCGGGCGGTTCCCCGAGGGGCAGACGGAAATACCTTTCGAGGCGGAGGT
TAAAGGCATCGACGGAATGATGGTACATTCAGTGTATCTCGCGAAAGAGG
GATTCTGCACCATGAATCCCGTGGACGTCGAGTTGAAACGATTTGTCCCT
CCCATCCCCCCCCCTGTCTTCCATCACTCCGAAACGTCCCACGAACTACG
ATGGTTGATGCTGATGCGCCCTGACGTTGATTATCCCGCGAACAATGCGC
ATGGCGGCCGTAGCATGCAGGGCAGCGTTAGCCTGGCGGACACCGCGAAC
CGCCGGAGCATATTCCGCGAGTCGTCCAAGCCCCTGGCGCTGCTCCACGA
GACCATCAACGTCATGGAAGCCGGGCGGTTCCCCGAGGGGCAGACGGAAA
TACCTTTCGAGGCGGAGGTTAAAGGCATCGACGGAATGCCTCTGCTGAAC
AGCTACTCGGGGGTGTACTTGTCAATCGCCTCTGCTGAACAGCTACTCGG
GGGTGTACTTGTCAATCGGCTATCATATCAGCGTCAAGATCGAGCGAGGC
TTAATGCGGAAGGAGCTCTCCAAGAAGATGGAATTTATAAGCTATCATAT
CAGCGTCAAGATCGAGCGAGGCTTAATGCGGAAGGAGCTCTCCAAGAAGA
TGGAATTTATAATCGAGGTCCCCGGGGAGGCGCCGACGCCTTCGACGGAG
GTGCCGTTTGAGATCACTCACGAGACGCTGGAGTACGCCCCGAAGCGTTA
CGGAAGGCTCCGACGGTTACGACCGTTTCGCGTGACGGGGAGGCTTCACG
ACGCGGCGGTTTCCACCAGCCGGCCGTTGACGGGGGAGGTGGTGGTGGAG
GAATCGGAGTGCCCGATAAAGTCGAGGTCCCCGGGGAGGCGCCGACGCCT
TCGACGGAGGTGCCGTTTGAGATCACTCACGAGACGCTGGAGTACGCCCC
GAAGCGTTACGGAAGGCTCCGACGGTTACGACCGTTTCGCGTGACGGGGA
GGCTTCACGACGCGGCGGTTTCCACCAGCCGGCCGTTGACGGGGGAGGTG
GTGGTGGAGGAATCGGAGTGCCCGATAAAGTCGTTGGAAGTTCAGCTAGT
GCGAGTTGAAACGGTCGAACAGTCGTTGGAAGTTCAGCTAGTGCGAGTTG
AAACGGTCGAACAGGCCGGCGGCCAGCTGCGGGAGGCCACCGAGATTCAA
AATCTTCAGATAGGAGATGGCGACGTGTGTCGCGGTCTGGCCATCCCGAT
CTACATGGTGCTCCCACGGCTCTTTTCTTGCCCAACGATGATCACGACGC
GCTTTCGGGTCGAATTCGAGCTGAACGTTATCATTTGCTTCGCGGAGGCG
GACGGATACACCGCGACACAGAATTTCCAGATACTGTTGATTTGAGCCGG
CGGCCAGCTGCGGGAGGCCACCGAGATTCAAAATCTTCAGATAGGAGATG
GCGACGTGTGTCGCGGTCTGGCCATCCCGATCTACATGGTGCTCCCACGG
CTCTTTTCTTGCCCAACGATGATCACGACGCGCTTTCGGGTCGAATTCGA
GCTGAACGTTATCATTTGCTTCGCGGAGGCGGACGGATACACCGCGACAC
AGAATTTCCAGATACTGTTGATTTGA
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