mRNA_H-elongata_contig17312.4489.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17312.4489.1
Unique NamemRNA_H-elongata_contig17312.4489.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig17312.4489.1 vs. uniprot
Match: D7FVR9_ECTSI (Heme-binding family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR9_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 4.820e-92
Identity = 162/267 (60.67%), Postives = 192/267 (71.91%), Query Frame = 3 
Query:  825 MEGVAEKLYAVRNAARDLSPNKVTKGIQTIASELENVLSRKPRGLYSPDYSVEDAREGFEIRRYASYAVCSAPM-ITTGDVTTLAAEDLSAVTVTTTAGSGEGFNTLAGYLFGNNTQERAMDMTTPVNIDVSPAGGRTMSFVMPKDIPAGEAPTPRDPRIGVTDVADGELLAVREFPGFATDGEVKRQVEAMLGALEREATHPWQEKRSSGGGNADTFGTAGIETVTSTSKSPWRAEDPSGMSYRLMQYNPPYTLPWVRTNSVAVRV 1622
            MEG+AE LY+++  AR+L+P K+ +G+QT A+E EN+ SR P GLYSP YS+EDAREGFEIRRYASYAVCSA M       +    +D + VT     GSGEGFNTLAGYLFG+N QE AMDMTTPVNIDV+ + GRTMSFVMPKD+PA EAPTPR+PR+ V DVA+GE+LAVREFPGFATDGEV  Q++ +L AL+ EA                           STS SPW A DP G SYRLMQYNPPYTLPW RTN++AV+V
Sbjct:    1 MEGIAENLYSIKKTARELTPQKLRQGLQTAAAETENIFSRTPSGLYSPSYSLEDAREGFEIRRYASYAVCSAQMDADAARESDQRDDDRTGVT----DGSGEGFNTLAGYLFGDNKQEVAMDMTTPVNIDVT-STGRTMSFVMPKDVPAEEAPTPRNPRVNVRDVAEGEVLAVREFPGFATDGEVGGQLDTLLWALQLEA---------------------------STSASPWCARDPVGRSYRLMQYNPPYTLPWQRTNAIAVQV 235
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BLAST of mRNA_H-elongata_contig17312.4489.1 vs. uniprot
Match: A0A7S0DGY6_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGY6_9EUKA)

HSP 1 Score: 144 bits (363), Expect = 1.940e-34
Identity = 91/254 (35.83%), Postives = 133/254 (52.36%), Query Frame = 3 
Query:  882 PNKVTKGIQTIASELENVLSRKPRGLYSPDYSVEDAREGFEIRRYASYAVCSAPMITTGDVTTLAAEDLSAVTVTTTAGSGEGFNTLAGYLFGNNTQERAMDMTTPVNIDVSPAGGRTMSFVMPKDIPAGEAPTPR-DPRIGVTDVADGELLAVREFPGFATDGEVKRQVEAMLGALEREATHPWQEKRSSGGGNADTFGTAGIETVTSTSKSPWRAEDPSGMSYRLMQYNPPYTLPWVRTNSVAVRVVNVASL 1640
            PNK+ + I     E +NV  R P GL  P YSV    + +EIR Y  Y + + PM ++ DV    A+            SG  FNTLAGY+FGNN +++AM MT PV + V   G   M+FV+P +  +  +P P  D  I +  V  G++LAVREFPGFATD E++RQ + +L ++ ++                                + + A D S  S+R++Q+NPPYTLPW+R N +  +V+ VA +
Sbjct:  114 PNKLKQSITDAQEEAKNVFRRTPTGLEMPTYSVLVQGDDYEIREYEPYTIAATPMTSSSDVGMSVAK------------SGNAFNTLAGYIFGNNQEKQAMSMTAPVEMTVGDKGASDMAFVLPSNF-SDSSPAPMADDDITIKKVP-GQILAVREFPGFATDMEIQRQKDFLLSSVSKD--------------------------------NDFVAPDQS--SFRVLQWNPPYTLPWLRRNEICTKVLRVAEI 319
[Close]
BLAST of mRNA_H-elongata_contig17312.4489.1 vs. uniprot
Match: A0A6V1RB38_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RB38_HETAK)

HSP 1 Score: 139 bits (350), Expect = 1.820e-31
Identity = 92/246 (37.40%), Postives = 122/246 (49.59%), Query Frame = 3 
Query:  903 IQTIASELENVLSRKPRGLYSPDYSVEDAREGFEIRRYASYAVCSAPMITTGDVTTLAAEDLSAVTVTTTAGSGEGFNTLAGYLFGNNTQERAMDMTTPVNIDVSPAGGRTMSFVMPKDIPAGEAPTPR-DPRIGVTDVADGELLAVREFPGFATDGEVKRQVEAMLGALEREATHPWQEKRSSGGGNADTFGTAGIETVTSTSKSPWRAEDPSGMSYRLMQYNPPYTLPWVRTNSVAVRVVNVAS 1637
            +Q+I +E +N+ SR P GL +P YSV  A   FEIR Y +YA  +  M               A ++     SG GFNTLAGYLFG+N  E  M+MT PV I  +  GGRTM+FV+P       AP P+ D  I V     G ++A  EFPGFAT+GE++RQ   +L ALE    +                                  +DP   +Y ++QYNPPYTLP  R N + V V  V++
Sbjct:  181 VQSIITESKNIYSRTPEGLETPKYSVVQATPAFEIRSYEAYATATTAMD-------------GAESMDDPFESGRGFNTLAGYLFGDNEAEEPMEMTIPVAISRAADGGRTMAFVLPSQYTPESAPAPKADANITVAQTKAGMMVAAVEFPGFATEGEIERQRVKLLEALEDAGEY--------------------------------EVKDPE--AYTVLQYNPPYTLPVFRRNELTVEVRPVSA 379
[Close]
BLAST of mRNA_H-elongata_contig17312.4489.1 vs. uniprot
Match: A0A7S2G1D3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G1D3_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.830e-30
Identity = 90/235 (38.30%), Postives = 120/235 (51.06%), Query Frame = 3 
Query:  933 VLSRKPRGLYSPDYSVEDAREGFEIRRYASYAVCSAPMITTGDVTTLAAEDLSAVTVTTTAGSGEGFNTLAGYLFGNNTQERAMDMTTPVNIDVSPAGGRTMSFVMPKDIPAGEAPTPRDPRIGVTDVADGELLAVREFPGFATDGEVKRQVEAMLGALEREATHPWQEKRSSGGGNADTFGTAGIETVTSTSKSPWRAEDPSGMSYRLMQYNPPYTLPWVRTNSVAVRVVNVAS 1637
            V+S  P GL SPDY+V D ++ FEIR YA Y+ C+A M  + D                  G+G  FNTLA Y+FG N  + ++ MTTPV I  S  G + MSFV+P  + A  AP P  PR+ V+DV    + AV EFPGFATDGEV R    +L  L++E                     AG+  V              G+ Y L+QYNPPYTLP++R N + + +   A+
Sbjct:  179 VVSSVPPGLQSPDYTVVDRQDAFEIRDYAPYSTCTAAMAGSEDP----------------FGAGASFNTLAEYIFGENDSKESLSMTTPVAISRSADGSQQMSFVLPGSLDASSAPAPISPRVIVSDVPTKRVAAV-EFPGFATDGEVSR----VLSTLQQELR------------------LAGLAPVD------------DGV-YTLLQYNPPYTLPFLRKNEIIIDLATEAT 361
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BLAST of mRNA_H-elongata_contig17312.4489.1 vs. uniprot
Match: A0A7S3E9Q7_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E9Q7_9RHOD)

HSP 1 Score: 131 bits (329), Expect = 1.250e-29
Identity = 86/240 (35.83%), Postives = 116/240 (48.33%), Query Frame = 3 
Query:  906 QTIASELENVLSRKPRGLYSPDYSVEDAREGFEIRRYASYAVCSAPMITTGDVTTLAAEDLSAVTVTTTAGSGEGFNTLAGYLFGNNTQERAMDMTTPVNIDVSPAGGRTMSFVMPKDIPAGEAPTPRDPRIGVTDVADGELLAVREFPGFATDGEVKRQVEAMLGALEREATHPWQEKRSSGGGNADTFGTAGIETVTSTSKSPWRAEDPSGMSYRLMQYNPPYTLPWVRTNSVAVRVV 1625
            + +  E  NV+ + P GL +PDYSV  + E FE+R Y SY +    M    D +   A   SA           GFNTLAGY+FG N +   + MTTPV +D +     TMSFV+P       AP P  P++ V + A  +L A +EFPGFAT+GE KRQ+  +   + +E                      GI    S               Y+L+QYNPPYTLPW+R N V + V+
Sbjct:  144 ELLRREAMNVMKKTPEGLETPDYSVVLSTEHFEVREYGSYVIAETTMPGKQDYSEAEAVQASA----------NGFNTLAGYIFGGNEEGEKISMTTPVVMDRTDDIS-TMSFVLPSKYSMDSAPPPNSPKVTVKETAT-QLFACKEFPGFATEGETKRQLATLKSYIGKEP---------------------GISMEDSD-------------RYQLLQYNPPYTLPWLRRNEVMIPVI 337
[Close]
BLAST of mRNA_H-elongata_contig17312.4489.1 vs. uniprot
Match: A0A7S0JKM7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JKM7_9EUKA)

HSP 1 Score: 128 bits (322), Expect = 1.230e-28
Identity = 89/253 (35.18%), Postives = 123/253 (48.62%), Query Frame = 3 
Query:  897 KGIQTIASELENVLSRKPRGLYSPDYSVEDAREGFEIRRYASYAVCSAPMITTGDVTTLAAEDLSAVTVTTTAGSGEGFNTLAGYLFGNNTQERAMDMTTPVNIDVSPAGGRTMSFVMPKDIPAGEAPTPRDPRIGVTDVADGELLAVREFPGFATDGEVKRQVEAMLGALEREATHPWQEKRSSGGGNADTFGTAGIETVTSTSKSPWRAEDPSGMSYRLMQYNPPYTLPWVRTNSVAVRVVNVASLGPVST 1655
            K ++ +  E  N  SR P GL +P Y+   + +G+E+R Y SY V    M   G+ +  +A           AGS   F  LA ++FG+N Q  ++ MTTPV  DV      +MSFV+P    A  AP P DP + +  V +G+ LAV EF GFAT GEV+RQ E +L  L R+                      G++                G SY + QYNPPYT+PW+R N +A+ V    SL P +T
Sbjct:  163 KALELVQQEAVNTFSRTPTGLETPPYTPLRSGDGYEVREYPSYGVARVQM---GEESATSA----------LAGS-RSFRALAAFVFGSNAQSESIGMTTPVRTDVDQLSS-SMSFVLPSKYSAATAPAPSDPAVRLQQV-EGQTLAVAEFTGFATGGEVERQREQLLAKLRRD----------------------GVDIPD------------GGSSYTVFQYNPPYTIPWLRRNELAMSV----SLAPPTT 361
[Close]
BLAST of mRNA_H-elongata_contig17312.4489.1 vs. uniprot
Match: A0A7S3Z1V0_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z1V0_9EUKA)

HSP 1 Score: 130 bits (327), Expect = 1.590e-28
Identity = 89/246 (36.18%), Postives = 128/246 (52.03%), Query Frame = 3 
Query:  927 ENVLSRKPRGLYSPDYSVEDAREGFEIRRYASYAVCSAPMITTGDVTTLAAEDLSAVTVTTTAGSGEGFNTLAGYLFGNNTQERAMDMTTPVNIDVSPAGGRTMSFVMPKDIPAGEAPTPRDPRIGVTDVADGELLAVREFPGFATDGEVKRQVEAMLGALEREATHPWQEKRSSGGGNADTFGTAGIETVTSTSKSPWRAEDPSGMSYRLMQYNPPYTLPWVRTNSVAVRVVNVASL-GPVSTST 1661
            +NV  R P GL  P+Y+V  + EGFEIR Y  Y V + PM T         + L +VT      SG+ FNTLA Y+FG N ++ AM MT PV + + P G + M+FV+P +  + + PTP             ++LAVREFPGFATD E++ Q  A++GA+   A++P                   I   T               S+R++Q+NPPYTLPW+R N +  +V+ V  +  PV+ +T
Sbjct:  257 KNVFRRTPTGLEMPNYTVLASGEGFEIREYDPYTVAATPMTTAAGAY---GDALQSVT-----DSGKAFNTLASYIFGQNQEKTAMAMTAPVEMTLEP-GVKEMAFVLPSEF-SEKTPTPEMEENITIKRMPSQILAVREFPGFATDKEIESQKAALIGAM---ASNP----------------DYAIADAT---------------SFRVLQWNPPYTLPWLRRNEICTKVLPVGQVVEPVAVAT 458
[Close]
BLAST of mRNA_H-elongata_contig17312.4489.1 vs. uniprot
Match: A0A0G4G1P9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G1P9_VITBC)

HSP 1 Score: 129 bits (323), Expect = 1.920e-28
Identity = 92/260 (35.38%), Postives = 123/260 (47.31%), Query Frame = 3 
Query:  903 IQTIASELENVLSRKPRGLYSPDYSVEDAREGFEIRRYASYAVCSAPMITTGD--VTTLAAEDLSAVTVTTTAGSGEGFNTLAGYLFGNNTQER------------------AMDMTTPVNIDVSPAGGRTMSFVMPKDIPAGEAPTPRDPRIGVTDVADGELLAVREFPGFATDGEVKRQVEAMLGALEREATHPWQEKRSSGGGNADTFGTAGIETVTSTSKSPWRAEDPSGMSYRLMQYNPPYTLPWVRTNSVAVRV 1622
            I T+  E  +   R P GL +P Y++    + FE+R+Y  YA+C+  M T  D   TT    DL A        +G+ F  LA YLFG N  +                   AM MTTPV ID S   G TMSF++P D     AP PRD  I + + A G++LAVR+F GFAT+GE+ RQ++ +  A+  E                                  W   D S  ++++ QYNPP TLPW+R N VAVRV
Sbjct:  163 IATLIKEGRSAFQRTPEGLETPMYTLLYKVDEFEVRQYPEYAICTVRMDTEKDDRYTT----DLLA--------TGQAFRQLAAYLFGENRPKPMAQVTLGEAEPPAADKGVAMAMTTPVIIDKSVPKGATMSFILPSDYTLDTAPLPRDIDIDI-EKAGGDVLAVRDFSGFATEGEISRQLDKLRDAIALEGK--------------------------------WEVVDESSDAFKVFQYNPPQTLPWLRKNEVAVRV 377
[Close]
BLAST of mRNA_H-elongata_contig17312.4489.1 vs. uniprot
Match: K8Z7F5_NANGC (Soul heme-binding protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z7F5_NANGC)

HSP 1 Score: 122 bits (306), Expect = 2.430e-26
Identity = 90/251 (35.86%), Postives = 118/251 (47.01%), Query Frame = 3 
Query:  912 IASELENVLSRKPRGLYSPDYSVEDAREGFEIRRYASYAVCSAPMITTGDVTTLAAEDLSAVTVTTTAGSGEGFNTLAGYLFGNNTQERAMDMTTPVNI--DVSPAGGR---TMSFVMPKDIPAGEAPTPRDPRIGVTDVADGELLAVREFPGFATDGEVKRQVEAMLGALEREATHPWQEKRSSGGGNADTFGTAGIETVTSTSKSPWRAEDPSGMSYRLMQYNPPYTLPWVRTNSVAVRVVNVASLGPV 1649
            + SE   V  R P GL +P + V     G+EIR Y  Y V    M   G     A    +   + +   +G  FNTLAGY+FG N  +  M MTTPV I  D    G     +M F+M        AP P D ++ +T  A  E LA REF GFAT+GEV+RQ+ ++L  L+R+                      G+  V           DP+  SYR+ QYNPPYTLPW+R N + V V    S+G V
Sbjct:  153 LPSEARTVFLRTPEGLETPSFQVLHEGHGYEIREYDPYTVAYTEM---GSSDAKAGSTSAGPVLGSPTMTGGAFNTLAGYIFGANEAKTNMAMTTPVEIRKDAQHRGAGEAYSMRFIMASPYTTETAPRPMDSKVRLTTTAR-ERLAAREFAGFATEGEVQRQLISLLSLLDRD----------------------GVTVV-----------DPA--SYRIFQYNPPYTLPWLRRNEILVEVRGGPSVGTV 364
[Close]
BLAST of mRNA_H-elongata_contig17312.4489.1 vs. uniprot
Match: A0A7S3AJD4_9EUKA (Hypothetical protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AJD4_9EUKA)

HSP 1 Score: 118 bits (296), Expect = 5.920e-26
Identity = 78/238 (32.77%), Postives = 117/238 (49.16%), Query Frame = 3 
Query:  948 PRGLYSPDYSVEDAREGFEIRRYASYAVCSAPMITTGDVTTLAAEDLSAVTVTTTAGSGEGFNTLAGYLFGNNTQERAMDMTTPVNIDVSPAGGRTMSFVMPKDIPAGEAPTPRDPRIGVTDVADGELLAVREFPGFATDGEVKRQVEAMLGALEREATHPWQEKRSSGGGNADTFGTAGIETVTSTSKSPWRAEDPSGMSYRLMQYNPPYTLPWVRTNSVAVRV-VNVASLGPVSTS 1658
            P GL +P ++V  + + +E+R Y SY V          VT++ + D +A  + T      GFN+LA + FG N     MDMT P+ +DVSP G   M+  +P    A  +P  +D ++ +      E +AVREF GFAT GE+KRQ+ ++L  L+R+A                                        G +Y ++QYNPPYTLPW+R N +AV + V VA+   V+ +
Sbjct:    2 PEGLETPSFTVISSGQQYEVRAYPSYGVA---------VTSIGSADAAADAIATA----RGFNSLATFFFGANADTEVMDMTAPLRVDVSPTGAE-MALPLPAKYSAATSPAAQDGKVTLRQTM-AETIAVREFTGFATGGEIKRQLSSLLDQLQRDAV-----------------------------------SIRDGDTYAVLQYNPPYTLPWLRRNEIAVPIAVAVAASDDVAAA 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17312.4489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVR9_ECTSI4.820e-9260.67Heme-binding family protein n=1 Tax=Ectocarpus sil... [more]
A0A7S0DGY6_9EUKA1.940e-3435.83Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6V1RB38_HETAK1.820e-3137.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G1D3_9STRA2.830e-3038.30Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3E9Q7_9RHOD1.250e-2935.83Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0JKM7_9EUKA1.230e-2835.18Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S3Z1V0_9EUKA1.590e-2836.18Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A0G4G1P9_VITBC1.920e-2835.38Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
K8Z7F5_NANGC2.430e-2635.86Soul heme-binding protein n=2 Tax=Nannochloropsis ... [more]
A0A7S3AJD4_9EUKA5.920e-2632.77Hypothetical protein n=2 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17312contigH-elongata_contig17312:1380..5926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.2
Seed ortholog evalue7e-79
Seed eggNOG ortholog2880.D7FVR9
EggNOG free text desc.Heme-binding-like protein At3g10130
EggNOG OGs2CMD4@1,2QQ0B@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size2144
Cds size1182
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17312.4489.1prot_H-elongata_contig17312.4489.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17312 1970..5554 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.5109422-UTR-H-elongata_contig17312:1379..19691622930007.5109422-UTR-H-elongata_contig17312:1379..1969Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17312 1380..1969 +
1691679243.483947-UTR-H-elongata_contig17312:1379..19691691679243.483947-UTR-H-elongata_contig17312:1379..1969Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17312 1380..1969 +
1622930007.6518333-UTR-H-elongata_contig17312:5554..59261622930007.6518333-UTR-H-elongata_contig17312:5554..5926Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17312 5555..5926 +
1691679243.5491142-UTR-H-elongata_contig17312:5554..59261691679243.5491142-UTR-H-elongata_contig17312:5554..5926Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17312 5555..5926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.534144-CDS-H-elongata_contig17312:1969..20711622930007.534144-CDS-H-elongata_contig17312:1969..2071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17312 1970..2071 +
1691679243.4941163-CDS-H-elongata_contig17312:1969..20711691679243.4941163-CDS-H-elongata_contig17312:1969..2071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17312 1970..2071 +
1622930007.554933-CDS-H-elongata_contig17312:2536..27871622930007.554933-CDS-H-elongata_contig17312:2536..2787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17312 2537..2787 +
1691679243.5049303-CDS-H-elongata_contig17312:2536..27871691679243.5049303-CDS-H-elongata_contig17312:2536..2787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17312 2537..2787 +
1622930007.5690734-CDS-H-elongata_contig17312:3145..32581622930007.5690734-CDS-H-elongata_contig17312:3145..3258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17312 3146..3258 +
1691679243.5135448-CDS-H-elongata_contig17312:3145..32581691679243.5135448-CDS-H-elongata_contig17312:3145..3258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17312 3146..3258 +
1622930007.5964878-CDS-H-elongata_contig17312:3613..37881622930007.5964878-CDS-H-elongata_contig17312:3613..3788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17312 3614..3788 +
1691679243.5220468-CDS-H-elongata_contig17312:3613..37881691679243.5220468-CDS-H-elongata_contig17312:3613..3788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17312 3614..3788 +
1622930007.621403-CDS-H-elongata_contig17312:4107..42291622930007.621403-CDS-H-elongata_contig17312:4107..4229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17312 4108..4229 +
1691679243.5310004-CDS-H-elongata_contig17312:4107..42291691679243.5310004-CDS-H-elongata_contig17312:4107..4229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17312 4108..4229 +
1622930007.6371279-CDS-H-elongata_contig17312:5135..55541622930007.6371279-CDS-H-elongata_contig17312:5135..5554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17312 5136..5554 +
1691679243.539662-CDS-H-elongata_contig17312:5135..55541691679243.539662-CDS-H-elongata_contig17312:5135..5554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17312 5136..5554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17312.4489.1

>prot_H-elongata_contig17312.4489.1 ID=prot_H-elongata_contig17312.4489.1|Name=mRNA_H-elongata_contig17312.4489.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=394bp
MNQPDMVANPARGQLSRGNNFCLSLFAPENWVQLAAPRIAKAAASSPSPM
RTKGSPGNVGVGTQASTRTRKSDGRVGPMEGVAEKLYAVRNAARDLSPNK
VTKGIQTIASELENVLSRKPRGLYSPDYSVEDAREGFEIRRYASYAVCSA
PMITTGDVTTLAAEDLSAVTVTTTAGSGEGFNTLAGYLFGNNTQERAMDM
TTPVNIDVSPAGGRTMSFVMPKDIPAGEAPTPRDPRIGVTDVADGELLAV
REFPGFATDGEVKRQVEAMLGALEREATHPWQEKRSSGGGNADTFGTAGI
ETVTSTSKSPWRAEDPSGMSYRLMQYNPPYTLPWVRTNSVAVRVVNVASL
GPVSTSTSTSAAEGAAETAGVTDVATDKNGDDSVEALSNAPGV*
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mRNA from alignment at H-elongata_contig17312:1380..5926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17312.4489.1 ID=mRNA_H-elongata_contig17312.4489.1|Name=mRNA_H-elongata_contig17312.4489.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4547bp|location=Sequence derived from alignment at H-elongata_contig17312:1380..5926+ (Himanthalia elongata Himel1 dioecious)
GTAAGCGTGAACTTAATTATGTTCATTGGAAATACCTCCGATACTAATAC
TAATACTAATACCCTCTTGTGACTGTATCGCATATGTCCACTTTACCTAT
AGTTGGTGTGGGAAAAGAGAGGACATGCCGTACAATAATTAGTCCATGGG
GTAGCCTAAATAGGCTGTACCCGTTACTCGAGCTACCTTGACTCCTAGAT
CAGTGTCGGCGGATTCTCGGTGGTAAACAACATCGGTACGCAATTGTGTG
ACCTGATGAAATCGGGATTGGCCCGAACGCAGTTTGACGGTAGAAATGGA
CGCCGTCACGGAAAACGAGAGGATCGCGGGAGAACGCACCAGATTCATTA
TGAGCGGGGCTGGGTTGGGAGAATGAGCGGGCTGACGTAGGACGGGACGG
CCGAACCAGTCTCGCGAGACCAAATTCTCAAGCGCGAACTAGGACAGGGA
AAGAATAATTTCCCCTGTCCAGCTGACAACAAGCAGGAGGTAACCAAATC
CGGTTGATCCTACACACACATGCACACATATGTACTTAAATCGGGAGGGA
TGTCTCTCTCTCTCCCTGGTCATCACATTTAGCCTTTAGTATGAATCAAC
CGGATATGGTTGCTAATCCTGCTCGTGGTCAGCTGAGCAGGGGTAATAAT
TTTTGCCTGTCCCTGTTCGCTCCTGAGAATTGGGTACAATTAGCTGGATA
CAGGTAAAACAGGTACCGTAGGTTCGATCATATTGATATTGATAAAAATA
TGTTTCTATTGAATAATTTATAGGCGTTGTCGTCAACCTTGGACCTTGGA
CCAAGTCCCCCGAGCACCCCATTCGCACAACAGTGAAATAAAGTGGAGGA
CTCTTAAAAGGAAGAGGACAAGAAGTTGATGATGTCGGTATTTTTCTGCC
AAGTGCTTGTTACTAGGTTACTAGCACGATTAGGACTGTAGCATGAATTG
CTCCTGAATGTTACATGCCTCTTAAGTGCACTATAATATACAACGTAAAT
AATATTACAGCCGGTGCGGGAAGTGGGTCTCGATTGGTGATGTCTACCTG
TTATTATCATGGAGTGACGCTAAGAGACTTGCAGGCTGACACACTGTGAC
TAACCCTCATTCACGTATATTTTCCTATGTTCTTCCCTGTCTGTCGAGGC
TCTTGAGGCGGCTCCTCGCATCGCCAAGGCAGCGGCATCGTCGCCAAGCC
CGATGAGGACCAAGGGTAGTCCGGGCAACGTCGGTGTGGGCACACAGGCA
TCGACACGGACACGAAAGAGTGACGGGAGGGTGGGCCCAATGGAAGGGGT
GGCCGAGAAACTTTACGCTGTAAGGAACGCCGCCAGGGACCTCTCGCCGA
ACAAGGTCACAAAGGGGATACAAACAATCGCTTCGGAGTTAGAGAACGTC
CTCAGCAGGTGAGATTCGCCGTGCGCTTGGATGACCATTTACCTTTTATA
TTCATTGTTTTTTTCATTTAGCGTTTTGTTTATATTGATTGTGTGATTAC
TTTGGGCGAAGTAGCCTAGGACTGCACTTCTTGTACTTCGTGTACAAAAC
CTCGGCTTAGCCTGATGAGATTGGTTGAAGCTGTATGTTCCAATCTCAAG
CGAACTACCGGTGTTCGATCCTTGGGCGGATCTCCTATAAAGTACAAACC
GCTACAGTCGTTTTTGTGGTCTAGTTGGAGCAGTCCTCGCGAGTCGGGAG
CACGTGATGTAGTGCCTCGCTTCCGCTTCCACCTCGACTTGTCTGAAACG
ACCCCATGTCATCCAGGAAGCCTAGAGGATTGTACAGTCCCGACTATTCG
GTTGAGGACGCTCGGGAAGGGTTCGAGATCCGGCGATACGCCTCCTACGC
TGTGTGCTCAGCGCCTATGATAACAACAGGTAATATCGACGTTATAAAAG
TCTCGGTGAGATTGCAATATTAATATTAGTAGTTAAGGACTTGTCGAGTG
TGTCTTGAGTACCGGTGAGGTATTTTGCGCAGCCTCTTTTCATTTTAAAA
TAACTCTATAAACTTGTTTTGCAGTGCCGGATTTGGTTGCCATGCTACGA
TTACTCGAGTTAGTAGATATTGTAATATTGCTGCAATTATTTTTGTAATA
CTGTAAGGTGCTGAATATCGCACGTCCACCCCTCCCAACACGAGGGATGG
ACTAGAGGTATTCGCTGGATTGGCAGCTGTAGTCTCAGGGTCACGTGACG
AGGCGTCTGTTCCTCACGGACATGTGGATTAAAGGTGACGTAACAACCCT
GGCGGCGGAGGACTTGAGCGCCGTCACCGTTACCACGACAGCGGGATCTG
GTGAGGGTTTCAACACCTTGGCCGGGTACCTTTTTGGCAACAACACGCAG
GAGCGTGCGATGGACATGACCACCCCGGTGAACATTGACGTCAGCCCAGC
CGGCGGCAGGTGGGGACGAAATGAACACACATGACGTTGCCACTATTCCT
TGCCCTAACCCTGACCCTTTTGTCCAAGGGAGCGTAATATCATCACCCTC
CCTGGAAGACCCACATCCTGAACATTTTGTCGAGGCAACCACTGATGGTA
ACTCTAGAGTGCCATCCTTGGTGTACGTCCGTTCGACTGGCCTCGTGAGT
CAGTATTCCACCCTTACCCTCAGATATACACGACAGCTGCAATCGTCCCC
TTTCTTTAGTTTATATCGGGCGCTCAACCGCAGCACACAGAAGCCCGCAT
TCGATCGCGACTGCACCGCGTGTCCCAGGACCATGTCGTTCGTTATGCCG
AAAGACATCCCTGCAGGGGAAGCGCCGACACCTCGAGACCCTCGGATAGG
TGTGACTGACGTCGCTGACGGGGAGCTGCTTGCAGTGCGCGAGTTCCCAG
GTAACGTTGACTGAGTTCTTGATGACTGCGTGTTGAACAGTGGCCGCTAT
GGTTCTAGGGGAGAAATTTGTTCGATAGGCCCATTAGCAAAAGTTGAACG
ATGAGGTGGATTAATGTACCTTACCTTACGGGTGTCCGGACAAACCACGT
TCGGTTCATGAATCCTTAATGTTATCTAGATACGATTATCAGTACATATA
CGAACTAATTATACAGGTAGCTCAATTGGAGGCACTCGTGATTTCTCGCG
GGTTTGTCTTTTTAAAACATTTTAACTCATTTTTAACCCCCCAAACATCC
AAACCATGCACGGTGAAGTCCAGGGAACCAACTACCCCGTGTTTTATTTG
TTTCGTTTTTTCTGTTGATCAAATTTTACGATTTTTTTTCCCTGTTCTGC
GAATCACGAGCGGGTTTGGGAATCGTCCCAATCGACATCGAGCCTCGTAT
GAACAGTCAAGAAAAGATAACCTACCAGGGTAGTAGAGAACAACTGACGA
GTAAAGTAGCAAACATTTCTTGTTCTTGTCAGACTGGCACATCACGTGAC
ATTTCTTGTCAGACTGGCACTATGACGTGACATTTCTTGTCAGACTGGCA
CATGACGTGACATTTACCGTGCCATTCCGCTGGTTTTATGTTGAAAACCT
TATTGATTTGGCCCTCTCCGTCCTCCTCCCATCATTTTCTTCAAGTGTCA
GGGATTTCATGACTGATGAGTTGAAATACGTTCGACACTAAGCGGCCTTG
CTTGTCCTGCCTGCCTCTCTTCCTCAATCACCAATGTTTCATCCTTCCAT
GGCTTGCCGATTCAAAGTACATGCCTAATATAATATAAACCCATTACAAG
AGACCCCCAAGTGCTTATCCGACAAATTGAAACCGTCGCGGCGAGGTCAA
ACGAAGGCTTTGCTACCGACGGCGAGGTCAAGAGACAGGTGGAGGCCATG
CTCGGAGCCCTGGAGCGCGAGGCTACACACCCTTGGCAGGAAAAACGCAG
CAGCGGTGGTGGTAACGCCGATACTTTCGGGACGGCAGGAATAGAGACGG
TAACGTCCACTTCCAAATCTCCCTGGCGGGCCGAGGATCCAAGCGGAATG
TCGTACCGCCTTATGCAGTACAACCCCCCTTACACCCTTCCGTGGGTCCG
CACCAACTCTGTTGCAGTGAGGGTTGTCAACGTTGCCAGCTTAGGGCCAG
TTTCGACGAGTACGAGTACAAGTGCCGCCGAGGGCGCTGCAGAGACTGCC
GGTGTGACCGATGTCGCCACTGATAAAAACGGCGATGATAGCGTCGAGGC
TCTTTCGAATGCACCGGGGGTTTGATAATCTCTTTTGACCCCTTTTTCCA
ATCCGGCCTGCAATTCCCATGTCAAGGCAAAAAATATCGTACAAAGCAAT
TGACATGTCAAGGCATGGATAACGTGAAGAATATTTTCCCCGCACGACGG
CCCTTGGCTGGATCGCGAAGGCAAGCGTCGTCGTTTTGAATTTAATTGAC
AATGGTACGATGTTGATAAGGGTATGAAAATTGACGTGAGTGAATAATAA
TGTAAATATTTCGTTTTTGTGATCATCACATATAGCAGAGTATGGATCAA
CATGATTTTGTTTATCGTTTATTACTTTGAAATCTTAAATATCTTGGGGA
TATACAATGAATGTTGTCAGTGATGTGTTAGCGTTCGCATCTCAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig17312:1380..5926+

>mRNA_H-elongata_contig17312.4489.1 ID=mRNA_H-elongata_contig17312.4489.1|Name=mRNA_H-elongata_contig17312.4489.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2364bp|location=Sequence derived from alignment at H-elongata_contig17312:1380..5926+ (Himanthalia elongata Himel1 dioecious)
ATGAATCAACCGGATATGGTTGCTAATCCTGCTCGTGGTCAGCTGAGCAG
GGGTAATAATTTTTGCCTGTCCCTGTTCGCTCCTGAGAATTGGGTACAAT
TAATGAATCAACCGGATATGGTTGCTAATCCTGCTCGTGGTCAGCTGAGC
AGGGGTAATAATTTTTGCCTGTCCCTGTTCGCTCCTGAGAATTGGGTACA
ATTAGCGGCTCCTCGCATCGCCAAGGCAGCGGCATCGTCGCCAAGCCCGA
TGAGGACCAAGGGTAGTCCGGGCAACGTCGGTGTGGGCACACAGGCATCG
ACACGGACACGAAAGAGTGACGGGAGGGTGGGCCCAATGGAAGGGGTGGC
CGAGAAACTTTACGCTGTAAGGAACGCCGCCAGGGACCTCTCGCCGAACA
AGGTCACAAAGGGGATACAAACAATCGCTTCGGAGTTAGAGAACGTCCTC
AGCAGGCGGCTCCTCGCATCGCCAAGGCAGCGGCATCGTCGCCAAGCCCG
ATGAGGACCAAGGGTAGTCCGGGCAACGTCGGTGTGGGCACACAGGCATC
GACACGGACACGAAAGAGTGACGGGAGGGTGGGCCCAATGGAAGGGGTGG
CCGAGAAACTTTACGCTGTAAGGAACGCCGCCAGGGACCTCTCGCCGAAC
AAGGTCACAAAGGGGATACAAACAATCGCTTCGGAGTTAGAGAACGTCCT
CAGCAGGAAGCCTAGAGGATTGTACAGTCCCGACTATTCGGTTGAGGACG
CTCGGGAAGGGTTCGAGATCCGGCGATACGCCTCCTACGCTGTGTGCTCA
GCGCCTATGATAACAACAGGAAGCCTAGAGGATTGTACAGTCCCGACTAT
TCGGTTGAGGACGCTCGGGAAGGGTTCGAGATCCGGCGATACGCCTCCTA
CGCTGTGTGCTCAGCGCCTATGATAACAACAGGTGACGTAACAACCCTGG
CGGCGGAGGACTTGAGCGCCGTCACCGTTACCACGACAGCGGGATCTGGT
GAGGGTTTCAACACCTTGGCCGGGTACCTTTTTGGCAACAACACGCAGGA
GCGTGCGATGGACATGACCACCCCGGTGAACATTGACGTCAGCCCAGCCG
GCGGCAGGTGACGTAACAACCCTGGCGGCGGAGGACTTGAGCGCCGTCAC
CGTTACCACGACAGCGGGATCTGGTGAGGGTTTCAACACCTTGGCCGGGT
ACCTTTTTGGCAACAACACGCAGGAGCGTGCGATGGACATGACCACCCCG
GTGAACATTGACGTCAGCCCAGCCGGCGGCAGGACCATGTCGTTCGTTAT
GCCGAAAGACATCCCTGCAGGGGAAGCGCCGACACCTCGAGACCCTCGGA
TAGGTGTGACTGACGTCGCTGACGGGGAGCTGCTTGCAGTGCGCGAGTTC
CCAGGACCATGTCGTTCGTTATGCCGAAAGACATCCCTGCAGGGGAAGCG
CCGACACCTCGAGACCCTCGGATAGGTGTGACTGACGTCGCTGACGGGGA
GCTGCTTGCAGTGCGCGAGTTCCCAGGCTTTGCTACCGACGGCGAGGTCA
AGAGACAGGTGGAGGCCATGCTCGGAGCCCTGGAGCGCGAGGCTACACAC
CCTTGGCAGGAAAAACGCAGCAGCGGTGGTGGTAACGCCGATACTTTCGG
GACGGCAGGAATAGAGACGGTAACGTCCACTTCCAAATCTCCCTGGCGGG
CCGAGGATCCAAGCGGAATGTCGTACCGCCTTATGCAGTACAACCCCCCT
TACACCCTTCCGTGGGTCCGCACCAACTCTGTTGCAGTGAGGGTTGTCAA
CGTTGCCAGCTTAGGGCCAGTTTCGACGAGTACGAGTACAAGTGCCGCCG
AGGGCGCTGCAGAGACTGCCGGTGTGACCGATGTCGCCACTGATAAAAAC
GGCGATGATAGCGTCGAGGCTCTTTCGAATGCACCGGGGGTTTGAGCTTT
GCTACCGACGGCGAGGTCAAGAGACAGGTGGAGGCCATGCTCGGAGCCCT
GGAGCGCGAGGCTACACACCCTTGGCAGGAAAAACGCAGCAGCGGTGGTG
GTAACGCCGATACTTTCGGGACGGCAGGAATAGAGACGGTAACGTCCACT
TCCAAATCTCCCTGGCGGGCCGAGGATCCAAGCGGAATGTCGTACCGCCT
TATGCAGTACAACCCCCCTTACACCCTTCCGTGGGTCCGCACCAACTCTG
TTGCAGTGAGGGTTGTCAACGTTGCCAGCTTAGGGCCAGTTTCGACGAGT
ACGAGTACAAGTGCCGCCGAGGGCGCTGCAGAGACTGCCGGTGTGACCGA
TGTCGCCACTGATAAAAACGGCGATGATAGCGTCGAGGCTCTTTCGAATG
CACCGGGGGTTTGA
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