mRNA_H-elongata_contig173039.4486.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig173039.4486.1
Unique NamemRNA_H-elongata_contig173039.4486.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig173039.4486.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.250e-18
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    4 KDMGDARYYMGCHITRNRKARELKLDQHLYVESMVERFDVKKGSKIPAMSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALTWTATMTRPDIASAVRAVAR 309
            K++G+ +++ GC I R+ +A  L++ Q  Y++SMVERFDVK  S+IPA  G     K ++       EE  ++P REA+G++ W +T +RPD++ AVRAVAR
Sbjct:  104 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 198
[Close]
BLAST of mRNA_H-elongata_contig173039.4486.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 9.440e-18
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    4 KDMGDARYYMGCHITRNRKARELKLDQHLYVESMVERFDVKKGSKIPAMSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALTWTATMTRPDIASAVRAVAR 309
            K++G+ +++ GC I R+ +A  L++ Q  Y++SMVERFDVK  S+IPA  G     K ++       EE  ++P REA+G++ W +T +RPD++ AVRAVAR
Sbjct:   40 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 134
[Close]
BLAST of mRNA_H-elongata_contig173039.4486.1 vs. uniprot
Match: A0A438K5H3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K5H3_VITVI)

HSP 1 Score: 85.5 bits (210), Expect = 3.110e-17
Identity = 43/106 (40.57%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    1 LKDMGDARYYMGCHITRNRKARELKLDQHLYVESMVERFDVKKGSK--IPAMSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALTWTATMTRPDIASAVRAVARF 312
            +KD+G+A Y +G  I R+R  R L L Q +Y++++++R++++   +  +P  +GV TLS+ D P+ PEE+E M + PY  AVGA+ +T T TRPD+A A+   +R+
Sbjct:  533 MKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRY 637
[Close]
BLAST of mRNA_H-elongata_contig173039.4486.1 vs. uniprot
Match: A0A438JH99_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JH99_VITVI)

HSP 1 Score: 85.5 bits (210), Expect = 3.170e-17
Identity = 43/106 (40.57%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    1 LKDMGDARYYMGCHITRNRKARELKLDQHLYVESMVERFDVKKGSK--IPAMSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALTWTATMTRPDIASAVRAVARF 312
            +KD+G+A Y +G  I R+R  R L L Q +Y++++++R++++   +  +P  +GV TLS+ D P+ PEE+E M + PY  AVGA+ +T T TRPD+A A+   +R+
Sbjct:  927 MKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRY 1031
[Close]
BLAST of mRNA_H-elongata_contig173039.4486.1 vs. uniprot
Match: A0A6H5L0C9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.260e-17
Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:    1 LKDMGDARYYMGCHITRNRKARELKLDQHLYVESMVERFDVKKGSKIPAMSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALTWTATMTRPDIASAVRAVARF 312
            +K++GD R+Y GC   R+R A  LK+ Q  Y E +   F V+ G +IP   G+  LS+ D+       EE+  +P+RE +G+L W AT TRPDIA+AVRAVAR+
Sbjct:  608 VKNLGDLRWYSGCFYERDRDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARY 704
[Close]
BLAST of mRNA_H-elongata_contig173039.4486.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.200e-17
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    4 KDMGDARYYMGCHITRNRKARELKLDQHLYVESMVERFDVKKGSKIPAMSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALTWTATMTRPDIASAVRAVAR 309
            K++G+ +++ GC I R+ +A  L++ Q  Y++SMVERFDVK  S+IPA  G     K ++       EE  ++P REA+G++ W +T +RPD++ AVRAVAR
Sbjct:  247 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 341
[Close]
BLAST of mRNA_H-elongata_contig173039.4486.1 vs. uniprot
Match: A0A6H5K1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.700e-17
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    4 KDMGDARYYMGCHITRNRKARELKLDQHLYVESMVERFDVKKGSKIPAMSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALTWTATMTRPDIASAVRAVAR 309
            K++G+ +++ GC I R+ +A  L++ Q  Y++SMVERFDVK  S+IPA  G     K ++       EE  ++P REA+G++ W +T +RPD++ AVRAVAR
Sbjct:  500 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 594
[Close]
BLAST of mRNA_H-elongata_contig173039.4486.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.900e-17
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    4 KDMGDARYYMGCHITRNRKARELKLDQHLYVESMVERFDVKKGSKIPAMSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALTWTATMTRPDIASAVRAVAR 309
            K++G+ +++ GC I R+ +A  L++ Q  Y++SMVERFDVK  S+IPA  G     K ++       EE  ++P REA+G++ W +T +RPD++ AVRAVAR
Sbjct:  960 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 1054
[Close]
BLAST of mRNA_H-elongata_contig173039.4486.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.960e-17
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    4 KDMGDARYYMGCHITRNRKARELKLDQHLYVESMVERFDVKKGSKIPAMSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALTWTATMTRPDIASAVRAVAR 309
            K++G+ +++ GC I R+ +A  L++ Q  Y++SMVERFDVK  S+IPA  G     K ++       EE  ++P REA+G++ W +T +RPD++ AVRAVAR
Sbjct: 1339 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 1433
[Close]
BLAST of mRNA_H-elongata_contig173039.4486.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.970e-17
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    4 KDMGDARYYMGCHITRNRKARELKLDQHLYVESMVERFDVKKGSKIPAMSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALTWTATMTRPDIASAVRAVAR 309
            K++G+ +++ GC I R+ +A  L++ Q  Y++SMVERFDVK  S+IPA  G     K ++       EE  ++P REA+G++ W +T +RPD++ AVRAVAR
Sbjct: 1359 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 1453
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173039.4486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRS6_9PHAE4.250e-1843.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPT0_9PHAE9.440e-1843.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438K5H3_VITVI3.110e-1740.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JH99_VITVI3.170e-1740.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5L0C9_9PHAE4.260e-1745.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KTL3_9PHAE5.200e-1743.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1T2_9PHAE5.700e-1743.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE5.900e-1743.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE5.960e-1743.14Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE5.970e-1743.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig173039contigH-elongata_contig173039:902..1213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score77.0
Seed ortholog evalue5.5e-12
Seed eggNOG ortholog65672.G4TWW2
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.2524068-UTR-H-elongata_contig173039:901..9101622930007.2524068-UTR-H-elongata_contig173039:901..910Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig173039 902..910 +
1691679243.4309266-UTR-H-elongata_contig173039:901..9101691679243.4309266-UTR-H-elongata_contig173039:901..910Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig173039 902..910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.2724774-CDS-H-elongata_contig173039:910..12131622930007.2724774-CDS-H-elongata_contig173039:910..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173039 911..1213 +
1691679243.440919-CDS-H-elongata_contig173039:910..12131691679243.440919-CDS-H-elongata_contig173039:910..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173039 911..1213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig173039.4486.1prot_H-elongata_contig173039.4486.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig173039 911..1213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig173039.4486.1

>prot_H-elongata_contig173039.4486.1 ID=prot_H-elongata_contig173039.4486.1|Name=mRNA_H-elongata_contig173039.4486.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MGDARYYMGCHITRNRKARELKLDQHLYVESMVERFDVKKGSKIPAMSGV
PTLSKADEPRNPEEKEEMRKFPYREAVGALTWTATMTRPDIASAVRAVAR
F
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mRNA from alignment at H-elongata_contig173039:902..1213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig173039.4486.1 ID=mRNA_H-elongata_contig173039.4486.1|Name=mRNA_H-elongata_contig173039.4486.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig173039:902..1213+ (Himanthalia elongata Himel1 dioecious)
TTGAAGGACATGGGTGACGCCAGGTACTACATGGGATGTCACATTACGAG
GAACCGCAAGGCGCGCGAGCTAAAGCTCGACCAACACTTGTACGTGGAGT
CGATGGTGGAAAGGTTTGACGTCAAGAAGGGAAGCAAGATACCGGCTATG
TCGGGGGTGCCAACACTCTCAAAGGCGGACGAGCCGCGGAACCCAGAGGA
GAAGGAAGAAATGAGAAAGTTTCCATACAGGGAAGCAGTGGGGGCGCTTA
CGTGGACGGCGACGATGACACGGCCGGACATTGCGAGCGCAGTACGCGCT
GTGGCCAGGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig173039:902..1213+

>mRNA_H-elongata_contig173039.4486.1 ID=mRNA_H-elongata_contig173039.4486.1|Name=mRNA_H-elongata_contig173039.4486.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig173039:902..1213+ (Himanthalia elongata Himel1 dioecious)
ATGGGTGACGCCAGGTACTACATGGGATGTCACATTACGAGGAACCGCAA
GGCGCGCGAGCTAAAGCTCGACCAACACTTGTACGTGGAGTCGATGGTGG
AAAGGTTTGACGTCAAGAAGGGAAGCAAGATACCGGCTATGTCGGGGGTG
CCAACACTCTCAAAGGCGGACGAGCCGCGGAACCCAGAGGAGAAGGAAGA
AATGAGAAAGTTTCCATACAGGGAAGCAGTGGGGGCGCTTACGTGGACGG
CGACGATGACACGGCCGGACATTGCGAGCGCAGTACGCGCTGTGGCCAGG
TTCATGGGTGACGCCAGGTACTACATGGGATGTCACATTACGAGGAACCG
CAAGGCGCGCGAGCTAAAGCTCGACCAACACTTGTACGTGGAGTCGATGG
TGGAAAGGTTTGACGTCAAGAAGGGAAGCAAGATACCGGCTATGTCGGGG
GTGCCAACACTCTCAAAGGCGGACGAGCCGCGGAACCCAGAGGAGAAGGA
AGAAATGAGAAAGTTTCCATACAGGGAAGCAGTGGGGGCGCTTACGTGGA
CGGCGACGATGACACGGCCGGACATTGCGAGCGCAGTACGCGCTGTGGCC
AGGTTC
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