mRNA_H-elongata_contig173028.4485.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig173028.4485.1
Unique NamemRNA_H-elongata_contig173028.4485.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig173028.4485.1 vs. uniprot
Match: D8LU01_ECTSI (GT23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU01_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.000e-8
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 ILNYMHSNWQQWVKRDIQIILDEPNIATLRDGPYVSIHVRRGDK 132
            +++++HS  Q W K DIQ ILDEP+IA +R+G YV +H+RR DK
Sbjct:  138 LVDHLHSYLQPWFKADIQRILDEPDIAEMRNGKYVGMHIRRTDK 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173028.4485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU01_ECTSI1.000e-854.55GT23 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig173028contigH-elongata_contig173028:125..259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size123
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.1713624-CDS-H-elongata_contig173028:124..2471622930007.1713624-CDS-H-elongata_contig173028:124..247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173028 125..247 -
1691679243.4136696-CDS-H-elongata_contig173028:124..2471691679243.4136696-CDS-H-elongata_contig173028:124..247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173028 125..247 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.1933515-UTR-H-elongata_contig173028:247..2591622930007.1933515-UTR-H-elongata_contig173028:247..259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig173028 248..259 -
1691679243.4220924-UTR-H-elongata_contig173028:247..2591691679243.4220924-UTR-H-elongata_contig173028:247..259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig173028 248..259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig173028.4485.1prot_H-elongata_contig173028.4485.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig173028 125..247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig173028.4485.1

>prot_H-elongata_contig173028.4485.1 ID=prot_H-elongata_contig173028.4485.1|Name=mRNA_H-elongata_contig173028.4485.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
MHSNWQQWVKRDIQIILDEPNIATLRDGPYVSIHVRRGDKI
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mRNA from alignment at H-elongata_contig173028:125..259-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig173028.4485.1 ID=mRNA_H-elongata_contig173028.4485.1|Name=mRNA_H-elongata_contig173028.4485.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig173028:125..259- (Himanthalia elongata Himel1 dioecious)
ATTTTAAACTATATGCATTCAAATTGGCAGCAGTGGGTAAAGAGAGACAT
CCAAATAATACTCGATGAACCCAACATAGCAACTTTGAGGGACGGACCGT
ACGTGAGCATTCACGTCCGACGCGGGGACAAGATT
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Coding sequence (CDS) from alignment at H-elongata_contig173028:125..259-

>mRNA_H-elongata_contig173028.4485.1 ID=mRNA_H-elongata_contig173028.4485.1|Name=mRNA_H-elongata_contig173028.4485.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig173028:125..259- (Himanthalia elongata Himel1 dioecious)
ATGCATTCAAATTGGCAGCAGTGGGTAAAGAGAGACATCCAAATAATACT
CGATGAACCCAACATAGCAACTTTGAGGGACGGACCGTACGTGAGCATTC
ACGTCCGACGCGGGGACAAGATTATGCATTCAAATTGGCAGCAGTGGGTA
AAGAGAGACATCCAAATAATACTCGATGAACCCAACATAGCAACTTTGAG
GGACGGACCGTACGTGAGCATTCACGTCCGACGCGGGGACAAGATT
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