mRNA_H-elongata_contig173024.4484.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig173024.4484.1
Unique NamemRNA_H-elongata_contig173024.4484.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig173024.4484.1 vs. uniprot
Match: D7FQE4_ECTSI (Heat shock protein, mitochondrial protein import, putative mitochondrial translocase complex subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQE4_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.540e-19
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 LLQMDVPYFGNNIEEYMQSIGSPDEVTKGTAPGLTPEVLEKFDVSVGADGVLNLNPK 171
            L ++D P FGNNIEEYMQS G+PDEVTKG AP LTPE+ EKFDV++G DGVL L+PK
Sbjct:  593 LKKLDFPAFGNNIEEYMQSTGTPDEVTKGRAPDLTPEIAEKFDVAMGKDGVLTLSPK 649
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173024.4484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQE4_ECTSI1.540e-1971.93Heat shock protein, mitochondrial protein import, ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig173024contigH-elongata_contig173024:939..1112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue7.6e-16
Seed eggNOG ortholog2880.D7FQE4
EggNOG free text desc.ankyrin repeats
EggNOG OGs28PNG@1,2QWAI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_006425.1
Exons1
Model size174
Cds size165
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.1026964-UTR-H-elongata_contig173024:938..9471622930007.1026964-UTR-H-elongata_contig173024:938..947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig173024 939..947 +
1691679243.390113-UTR-H-elongata_contig173024:938..9471691679243.390113-UTR-H-elongata_contig173024:938..947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig173024 939..947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.1164098-CDS-H-elongata_contig173024:947..11121622930007.1164098-CDS-H-elongata_contig173024:947..1112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173024 948..1112 +
1691679243.4043005-CDS-H-elongata_contig173024:947..11121691679243.4043005-CDS-H-elongata_contig173024:947..1112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173024 948..1112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig173024.4484.1prot_H-elongata_contig173024.4484.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig173024 948..1112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig173024.4484.1

>prot_H-elongata_contig173024.4484.1 ID=prot_H-elongata_contig173024.4484.1|Name=mRNA_H-elongata_contig173024.4484.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MDVPYFGNNIEEYMQSIGSPDEVTKGTAPGLTPEVLEKFDVSVGADGVLN
LNPK*
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mRNA from alignment at H-elongata_contig173024:939..1112+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig173024.4484.1 ID=mRNA_H-elongata_contig173024.4484.1|Name=mRNA_H-elongata_contig173024.4484.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig173024:939..1112+ (Himanthalia elongata Himel1 dioecious)
CTTCTGCAGATGGACGTCCCGTACTTCGGGAACAACATCGAGGAATACAT
GCAGTCCATAGGCTCGCCCGATGAGGTTACCAAGGGAACCGCTCCTGGCC
TCACCCCGGAAGTGCTTGAAAAGTTCGATGTCAGCGTGGGCGCTGATGGT
GTTCTTAACTTGAATCCAAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig173024:939..1112+

>mRNA_H-elongata_contig173024.4484.1 ID=mRNA_H-elongata_contig173024.4484.1|Name=mRNA_H-elongata_contig173024.4484.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig173024:939..1112+ (Himanthalia elongata Himel1 dioecious)
ATGGACGTCCCGTACTTCGGGAACAACATCGAGGAATACATGCAGTCCAT
AGGCTCGCCCGATGAGGTTACCAAGGGAACCGCTCCTGGCCTCACCCCGG
AAGTGCTTGAAAAGTTCGATGTCAGCGTGGGCGCTGATGGTGTTCTTAAC
TTGAATCCAAAATAAATGGACGTCCCGTACTTCGGGAACAACATCGAGGA
ATACATGCAGTCCATAGGCTCGCCCGATGAGGTTACCAAGGGAACCGCTC
CTGGCCTCACCCCGGAAGTGCTTGAAAAGTTCGATGTCAGCGTGGGCGCT
GATGGTGTTCTTAACTTGAATCCAAAATAA
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