mRNA_H-elongata_contig172906.4477.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172906.4477.1
Unique NamemRNA_H-elongata_contig172906.4477.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig172906.4477.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.850e-27
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:    1 MRAFQDYLLGPLKAVLVRALQQQLAKYIHNIELEELGLMGGEIVLENLELKKDVLHESLRIPTDYDFSR 207
            MRAF D LLGPLKAVL+R LQQQL+KYIHNIELEELGLMGG++VLENLEL+KDVLH+   I TDYDFSR
Sbjct:    1 MRAFSDILLGPLKAVLMRVLQQQLSKYIHNIELEELGLMGGDVVLENLELRKDVLHDIGGISTDYDFSR 69
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BLAST of mRNA_H-elongata_contig172906.4477.1 vs. uniprot
Match: A0A2P4XIP8_9STRA (Vacuolar protein sorting-associated protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIP8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.730e-14
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   22 LLGPLKAVLVRALQQQLAKYIHNIELEELGLMGGEIVLENLELKKDVLHESLRIPTDYDFSR 207
            LL PL+  + + LQ  L+KYI +I+LE LGL GG++VL +LE+K+ VL ESL IP+ +DFSR
Sbjct:    4 LLSPLRGYIAQNLQFYLSKYIEDIQLEGLGLFGGDLVLNDLEIKRHVLRESLEIPSSFDFSR 65
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BLAST of mRNA_H-elongata_contig172906.4477.1 vs. uniprot
Match: H3H1A7_PHYRM (Chorein N-terminal domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1A7_PHYRM)

HSP 1 Score: 72.0 bits (175), Expect = 3.190e-13
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   22 LLGPLKAVLVRALQQQLAKYIHNIELEELGLMGGEIVLENLELKKDVLHESLRIPTDYDFSR 207
            LL PL+  + ++LQ  L KYI +I+LE LGL GG++VL +LE+K+ VL ESL IP+ +DFSR
Sbjct:    4 LLSPLRGYIAQSLQFYLGKYIEDIQLEGLGLFGGDVVLNDLEIKRHVLRESLEIPSSFDFSR 65
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BLAST of mRNA_H-elongata_contig172906.4477.1 vs. uniprot
Match: A0A0W8D6K5_PHYNI (Major facilitator Superfamily n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D6K5_PHYNI)

HSP 1 Score: 70.9 bits (172), Expect = 4.130e-13
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   22 LLGPLKAVLVRALQQQLAKYIHNIELEELGLMGGEIVLENLELKKDVLHESLRIPTDYDFSR 207
            LL PL+  + + LQ  L+KYI +I+LE LGL GG++VL +LE+K+ VL ESL IP+ +DFSR
Sbjct:    4 LLSPLRGYIAQNLQFYLSKYIEDIQLEGLGLFGGDLVLNDLEIKRHVLRESLEIPSSFDFSR 65
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BLAST of mRNA_H-elongata_contig172906.4477.1 vs. uniprot
Match: A0A2R5GB42_9STRA (Vacuolar protein sorting-associated protein 13B n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GB42_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.500e-13
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:   16 DYLLGPLKAVLVRALQQQLAKYIHNIELEELGLMGGEIVLENLELKKDVLHESLRIPTDYDFSR 207
            DYLLGPLK  L + L   L+KYI NI ++ LG+ GG+I+L +LEL+ DVL ESL+IP  ++FSR
Sbjct:    4 DYLLGPLKRYLTQTLSTSLSKYISNINVDTLGV-GGDIILRDLELRLDVLQESLKIPLAFEFSR 66
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BLAST of mRNA_H-elongata_contig172906.4477.1 vs. uniprot
Match: A0A225X334_9STRA (Chorein N-terminal domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X334_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.600e-13
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   22 LLGPLKAVLVRALQQQLAKYIHNIELEELGLMGGEIVLENLELKKDVLHESLRIPTDYDFSR 207
            LL PL+  + + LQ  L+KYI +I+LE LGL GG++VL +LE+K+ VL ESL IP+ +DFSR
Sbjct:    4 LLSPLRGYIAQNLQFYLSKYIEDIQLEGLGLFGGDLVLNDLEIKRHVLRESLEIPSSFDFSR 65
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BLAST of mRNA_H-elongata_contig172906.4477.1 vs. uniprot
Match: A0A3F2RKP7_9STRA (Chorein N-terminal domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RKP7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 9.600e-13
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   22 LLGPLKAVLVRALQQQLAKYIHNIELEELGLMGGEIVLENLELKKDVLHESLRIPTDYDFSR 207
            +L PL+  + + LQ  L+KYI +I+LE LGL GG++VL +LE+K+ VL ESL IP+ +DFSR
Sbjct:    4 ILSPLRGYIAQNLQFYLSKYIEDIQLEGLGLFGGDLVLNDLEIKRHVLRESLDIPSSFDFSR 65
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BLAST of mRNA_H-elongata_contig172906.4477.1 vs. uniprot
Match: K3X2H6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2H6_GLOUD)

HSP 1 Score: 71.2 bits (173), Expect = 9.830e-13
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   16 DYLLGPLKAVLVRALQQQLAKYIHNIELEELGLMGGEIVLENLELKKDVLHESLRIPTDYDFSR 207
            D L  PL+  + + LQ  L+KYI  I+LE LG+ GG++VL +LE+K+DVL ESL IP+ +DFSR
Sbjct:    3 DILSSPLRGYIAQNLQFYLSKYIEGIQLEGLGIFGGDLVLNDLEIKRDVLLESLEIPSSFDFSR 66
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BLAST of mRNA_H-elongata_contig172906.4477.1 vs. uniprot
Match: A0A6G0S2V8_9STRA (Chorein N-terminal domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0S2V8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.360e-12
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   22 LLGPLKAVLVRALQQQLAKYIHNIELEELGLMGGEIVLENLELKKDVLHESLRIPTDYDFSR 207
            LL PL+  + + LQ  L+KYI +I+LE LGL GG++VL +LE+K+ VL ESL IP+ +DFSR
Sbjct:    4 LLSPLRGYIAQNLQFYLSKYIEDIQLEGLGLFGGDLVLNDLEIKRHVLRESLEIPSSFDFSR 65
[Close]
BLAST of mRNA_H-elongata_contig172906.4477.1 vs. uniprot
Match: A0A6A3ND96_9STRA (Chorein N-terminal domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3ND96_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.370e-12
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   22 LLGPLKAVLVRALQQQLAKYIHNIELEELGLMGGEIVLENLELKKDVLHESLRIPTDYDFSR 207
            LL PL+  + + LQ  L+KYI +I+LE LGL GG++VL +LE+K+ VL ESL IP+ +DFSR
Sbjct:    4 LLSPLRGYIAQNLQFYLSKYIEDIQLEGLGLFGGDLVLNDLEIKRHVLRESLEIPSSFDFSR 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172906.4477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKG1_9PHAE1.850e-2781.16VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more]
A0A2P4XIP8_9STRA6.730e-1454.84Vacuolar protein sorting-associated protein (Fragm... [more]
H3H1A7_PHYRM3.190e-1354.84Chorein N-terminal domain-containing protein n=1 T... [more]
A0A0W8D6K5_PHYNI4.130e-1354.84Major facilitator Superfamily n=1 Tax=Phytophthora... [more]
A0A2R5GB42_9STRA5.500e-1356.25Vacuolar protein sorting-associated protein 13B n=... [more]
A0A225X334_9STRA5.600e-1354.84Chorein N-terminal domain-containing protein n=1 T... [more]
A0A3F2RKP7_9STRA9.600e-1353.23Chorein N-terminal domain-containing protein n=3 T... [more]
K3X2H6_GLOUD9.830e-1353.13Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6G0S2V8_9STRA1.360e-1254.84Chorein N-terminal domain-containing protein n=4 T... [more]
A0A6A3ND96_9STRA1.370e-1254.84Chorein N-terminal domain-containing protein n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172906contigH-elongata_contig172906:914..1138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.8e-15
Seed eggNOG ortholog2880.D8LBD2
Preferred nameVPS13B
KEGG koko:K19526
GOsGO:0005575,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044425,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930006.1731627-CDS-H-elongata_contig172906:913..11381622930006.1731627-CDS-H-elongata_contig172906:913..1138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172906 914..1138 +
1691679243.0597687-CDS-H-elongata_contig172906:913..11381691679243.0597687-CDS-H-elongata_contig172906:913..1138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172906 914..1138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172906.4477.1prot_H-elongata_contig172906.4477.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172906 914..1138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172906.4477.1

>prot_H-elongata_contig172906.4477.1 ID=prot_H-elongata_contig172906.4477.1|Name=mRNA_H-elongata_contig172906.4477.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MRAFQDYLLGPLKAVLVRALQQQLAKYIHNIELEELGLMGGEIVLENLEL
KKDVLHESLRIPTDYDFSRLVNTP*
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mRNA from alignment at H-elongata_contig172906:914..1138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172906.4477.1 ID=mRNA_H-elongata_contig172906.4477.1|Name=mRNA_H-elongata_contig172906.4477.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig172906:914..1138+ (Himanthalia elongata Himel1 dioecious)
ATGAGAGCTTTTCAGGACTATTTGTTAGGACCGCTTAAGGCGGTCCTGGT
GCGAGCCCTACAGCAACAGCTAGCTAAGTACATCCACAACATCGAACTCG
AGGAGCTGGGTCTCATGGGCGGAGAAATTGTGCTCGAGAACCTTGAGCTG
AAGAAGGATGTCCTGCACGAGAGCCTTCGCATCCCCACGGATTACGATTT
TTCGAGGTTAGTAAACACACCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig172906:914..1138+

>mRNA_H-elongata_contig172906.4477.1 ID=mRNA_H-elongata_contig172906.4477.1|Name=mRNA_H-elongata_contig172906.4477.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig172906:914..1138+ (Himanthalia elongata Himel1 dioecious)
ATGAGAGCTTTTCAGGACTATTTGTTAGGACCGCTTAAGGCGGTCCTGGT
GCGAGCCCTACAGCAACAGCTAGCTAAGTACATCCACAACATCGAACTCG
AGGAGCTGGGTCTCATGGGCGGAGAAATTGTGCTCGAGAACCTTGAGCTG
AAGAAGGATGTCCTGCACGAGAGCCTTCGCATCCCCACGGATTACGATTT
TTCGAGGTTAGTAAACACACCATGAATGAGAGCTTTTCAGGACTATTTGT
TAGGACCGCTTAAGGCGGTCCTGGTGCGAGCCCTACAGCAACAGCTAGCT
AAGTACATCCACAACATCGAACTCGAGGAGCTGGGTCTCATGGGCGGAGA
AATTGTGCTCGAGAACCTTGAGCTGAAGAAGGATGTCCTGCACGAGAGCC
TTCGCATCCCCACGGATTACGATTTTTCGAGGTTAGTAAACACACCATGA
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