mRNA_H-elongata_contig172885.4475.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172885.4475.1
Unique NamemRNA_H-elongata_contig172885.4475.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig172885.4475.1 vs. uniprot
Match: A0A7S6UA20_9STRA (30S ribosomal protein S7, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA20_9STRA)

HSP 1 Score: 289 bits (740), Expect = 7.540e-97
Identity = 147/153 (96.08%), Postives = 151/153 (98.69%), Query Frame = 1
Query:  322 KDRRQRQFPKPDPVYNSFLVSLFTSKILKNGKKTLATRIIEETFSIIQQRTSEEPLKIFERAVKNVCPSLQVKAKRVGGSTYQVPKEVNKFKGINLALCWIIRFARNRSGPTIAIKLANEIIEASKGSGNSIRKKEETHRMAKSNKAFAHFRS 780
            +  ++R+FPKPDPVYNSFLVSLFTSKILKNGKKTLATRIIEETFSIIQQRTSEEPLKIFERAVKNVCPSLQVKAKRVGGSTYQVPKEVNKFKGINLALCWIIRFARNRSGPTIAIKLANEIIEASKGSGNSIRKKEETHRMAKSNKAFAHFRS
Sbjct:    4 RSNKKREFPKPDPVYNSFLVSLFTSKILKNGKKTLATRIIEETFSIIQQRTSEEPLKIFERAVKNVCPSLQVKAKRVGGSTYQVPKEVNKFKGINLALCWIIRFARNRSGPTIAIKLANEIIEASKGSGNSIRKKEETHRMAKSNKAFAHFRS 156          
BLAST of mRNA_H-elongata_contig172885.4475.1 vs. uniprot
Match: A0A812SXH1_SYMMI (Ribosomal protein S7 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SXH1_SYMMI)

HSP 1 Score: 292 bits (747), Expect = 3.650e-96
Identity = 147/273 (53.85%), Postives = 203/273 (74.36%), Query Frame = 1
Query:    1 MPTIQQLVRTTRKKVQTRTKSPALKNCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKDRRQRQFPK--------------PDPVYNSFLVSLFTSKILKNGKKTLATRIIEETFSIIQQRTSEEPLKIFERAVKNVCPSLQVKAKRVGGSTYQVPKEVNKFKGINLALCWIIRFARNRSGPTIAIKLANEIIEASKGSGNSIRKKEETHRMAKSNKAFAHFR 777
            MPTI QL+R  RK    R K PAL+ CPQ+RGVCTRVYT TPKKPNSA+RKVARVRLT+GFEVT+YIPG GHNLQEHSVV++RGGRVKDLPGVRYH++RGTLD+ GVKDRRQR+                 PDP +   ++S F + ++ +GKK++A  I+      +Q+R  ++P+++F  A+ NV P ++V+++RVGG+TYQVP EV   +G  LA+ W+I  +R+RS  T+  +LA E+++AS   G++++K+E+THRMA++NKAF+H+R
Sbjct:    1 MPTINQLIRKPRKPEVVRNKVPALEACPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGFEVTSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTQGVKDRRQRRSKYGMSRRHRAEKREVLPDPKFGDIVLSKFMNCLMYDGKKSVAEGIVYGALDRVQERGGQDPVRVFHEALDNVKPDIEVRSRRVGGATYQVPVEVRHDRGQALAIRWLISASRSRSELTMTERLAGELMDASNNRGSAVKKREDTHRMAEANKAFSHYR 273          
BLAST of mRNA_H-elongata_contig172885.4475.1 vs. uniprot
Match: R6G9Q3_9BIFI (Multifunctional fusion protein n=28 Tax=Bacteria TaxID=2 RepID=R6G9Q3_9BIFI)

HSP 1 Score: 281 bits (718), Expect = 2.700e-91
Identity = 152/306 (49.67%), Postives = 206/306 (67.32%), Query Frame = 1
Query:    1 MPTIQQLVRTTRKKVQTRTKSPALKNCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKDRRQRQ-------------------------FPK----------------------PDPVYNSFLVSLFTSKILKNGKKTLATRIIEETFSIIQQRTSEEPLKIFERAVKNVCPSLQVKAKRVGGSTYQVPKEVNKFKGINLALCWIIRFARNRSGPTIAIKLANEIIEASKGSGNSIRKKEETHRMAKSNKAFAHFR 777
            MPTI+QLVR  R+    ++K+ ALK  P RRGVCTRVYT TPKKPNSA+RKVARVRL+SG EVTAYIPG GHNLQEHS+VL+RGGRVKDLPGVRYH+VRG LD+ GVKDR+Q +                         FP                       PDP+Y S +V+   +KIL +GKK++A  I+     +++++T +EP+ + +RA+ N+ PSL+V+++RVGG+TYQVP EV   +   L+L W+  F+R R   T+A +LANEI++AS G G S++++E+TH+MA++NKAFAH+R
Sbjct:    1 MPTIEQLVRKGRQAKPKKSKTLALKGSPLRRGVCTRVYTTTPKKPNSALRKVARVRLSSGIEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGALDTQGVKDRKQGRSLYGAKKHRAWRARYPGCQGPQAGSFPVRSKEGEVREMSRKGPAKKHQLLPDPIYGSTVVAQLINKILLDGKKSIAEDIVYSALDMVKEKTDQEPVAVLKRALDNIRPSLEVRSRRVGGATYQVPVEVKPARANTLSLRWLTDFSRARREKTMAERLANEILDASNGLGASVKRREDTHKMAEANKAFAHYR 306          
BLAST of mRNA_H-elongata_contig172885.4475.1 vs. uniprot
Match: A0A328DPV2_9ASTE (Ribosomal protein S7 n=5 Tax=Pentapetalae TaxID=1437201 RepID=A0A328DPV2_9ASTE)

HSP 1 Score: 275 bits (703), Expect = 1.420e-89
Identity = 136/230 (59.13%), Postives = 180/230 (78.26%), Query Frame = 1
Query:  115 TITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKDRRQ---------RQFPKPDPVYNSFLVSLFTSKILKNGKKTLATRIIEETFSIIQQRTSEEPLKIFERAVKNVCPSLQVKAKRVGGSTYQVPKEVNKFKGINLALCWIIRFARNRSGPTIAIKLANEIIEASKGSGNSIRKKEETHRMAKSNKAFAHFR 777
            TITPKKPNSA+RKVARVRLTSGFE+TAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYH+VRGTLD++GVKDR+Q         ++  K DP+Y + LV++  ++ILK+GKK+LA +I+      IQQ T + PL +  +A++ V P L VKA+RV GST+QVP E+   +G  L + W++  +R R G  +A KL++E+++A+KG G++IRKKEETHRMA++N+AFAHFR
Sbjct:   39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSKYGVLQKKKTKSDPIYRNRLVNMLVNRILKHGKKSLAYQIMYRAVKTIQQNTEKNPLSVLRQAIRGVTPDLTVKARRVSGSTHQVPIEIRSTQGKALFVRWLLAASRKRPGRDMAFKLSSELVDAAKGRGDAIRKKEETHRMAEANRAFAHFR 268          
BLAST of mRNA_H-elongata_contig172885.4475.1 vs. uniprot
Match: X8CAM0_MYCXE (Multifunctional fusion protein n=1 Tax=Mycobacterium xenopi 3993 TaxID=1299333 RepID=X8CAM0_MYCXE)

HSP 1 Score: 274 bits (700), Expect = 5.990e-89
Identity = 149/279 (53.41%), Postives = 199/279 (71.33%), Query Frame = 1
Query:    1 MPTIQQLVRTTRKKVQTRTKSPALKNCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKD----------RRQR----QFPKP------DPVYNSFLVSLFTSKILKNGKKTLATRIIEETFSIIQQRTSEEPLKIFERAVKNVCPSLQVKAKRVGGSTYQVPKEVNKFKGINLALCWIIRFARNRSGPTIAIKLANEIIEASKGSGNSIRKKEETHRMAKSNKAFAHFR 777
            MPTIQQLVR  R+    + K+ ALK  PQRRGVCTRVYT TPKKPNSA+RKVARV+LTS  EVTAYIPG GHNLQEHS+VL+RGGRVKDLPGVRY ++RG+LD+ G +           RR+R    Q P P      DPVY S LV+   +K+L  GKK+LA RI+       +++T  +P+   +RA+ NV P+L+V+++RVGG+TYQVP EV   +   LAL W++ ++R R   T+  +LANEI++AS G G S++++E+TH+MA++N+AFAH+R
Sbjct:    1 MPTIQQLVRKGRRDKIGKVKTAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSQVEVTAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIIRGSLDTQGSRTASRLAAATAPRRRRADAAQGPAPKRPLVNDPVYGSQLVTQLVNKVLMRGKKSLAERIVYGALEHAREKTGTDPVITLKRALDNVRPALEVRSRRVGGATYQVPVEVRPDRSTTLALRWLVNYSRQRREKTMVERLANEILDASNGLGASVKRREDTHKMAEANRAFAHYR 279          
BLAST of mRNA_H-elongata_contig172885.4475.1 vs. uniprot
Match: A0A6A5L6M8_LUPAL (Ribosomal_S7 domain-containing protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A6A5L6M8_LUPAL)

HSP 1 Score: 269 bits (688), Expect = 1.160e-87
Identity = 143/259 (55.21%), Postives = 190/259 (73.36%), Query Frame = 1
Query:    1 MPTIQQLVRTTRKKVQTRTKSPALKNCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKDRRQRQFPKPDPVYNSFLVSLFTSKILKNGKKTLATRIIEETFSIIQQRTSEEPLKIFERAVKNVCPSLQVKAKRVGGSTYQVPKEVNKFKGINLALCWIIRFARNRSGPTIAIKLANEIIEASKGSGNSIRKKEETHRMAKSNKAFAHFR 777
            MPTIQQLVR  R  ++ ++KSPAL +CPQRRGVCTRVYT TPKKPNSA+RKVARVRLT+G EV AYIPG GHNLQEHS+VL+RGGRVKDLPGVRYH++RG LD+ GV  R QR+             S + +K  K G+   A   ++    I++++TSE  L  +++A+ NV P+++VK++RVGG+ +QVP EV   + I L + W+I +AR R   T+  KLA EII A+KG G +++KKE+TH+MA++NKAF+HFR
Sbjct:    1 MPTIQQLVRKGRVALEDKSKSPALDSCPQRRGVCTRVYTTTPKKPNSAMRKVARVRLTNGKEVNAYIPGEGHNLQEHSIVLIRGGRVKDLPGVRYHIIRGALDTSGVAGRNQRR-------------SKYGTKRPKPGQPAAAPAKVD----IVEKKTSESGLDTWKKALNNVMPAVEVKSRRVGGANFQVPTEVRPERKIALGMKWLISYARKRGEKTMMEKLAGEIISAAKGEGAAVKKKEDTHKMAEANKAFSHFR 242          
BLAST of mRNA_H-elongata_contig172885.4475.1 vs. uniprot
Match: A0A445BJ13_ARAHY (Ribosomal protein S7 n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A445BJ13_ARAHY)

HSP 1 Score: 268 bits (684), Expect = 5.400e-86
Identity = 136/246 (55.28%), Postives = 180/246 (73.17%), Query Frame = 1
Query:  115 TITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKDRRQ-------------------------RQFPKPDPVYNSFLVSLFTSKILKNGKKTLATRIIEETFSIIQQRTSEEPLKIFERAVKNVCPSLQVKAKRVGGSTYQVPKEVNKFKGINLALCWIIRFARNRSGPTIAIKLANEIIEASKGSGNSIRKKEETHRMAKSNKAFAHFR 777
            TITPKKPNSA+RKVARVRLTSGFE+TAYIP IGHNLQEHSVVL+RGGRVKDLPGVRYH+VRGTLD++GVKDR+Q                          +  K +P+Y + LV++  ++ILK+GKK+LA +II      IQQ+T   PL +  +A++ V P + VKA+RVG ST+QVP E+   +G  LA+ W++  +R R G  +A KL++E+++A+KGSG++IRKKEETHRMA++N+AFAHFR
Sbjct:   73 TITPKKPNSALRKVARVRLTSGFEITAYIPDIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAFYKKKQIIPFTLMSRRGTVEEKTAKSNPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGRSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 318          
BLAST of mRNA_H-elongata_contig172885.4475.1 vs. uniprot
Match: K4D762_SOLLC (Ribosomal protein S7 n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=K4D762_SOLLC)

HSP 1 Score: 263 bits (672), Expect = 1.230e-84
Identity = 130/230 (56.52%), Postives = 175/230 (76.09%), Query Frame = 1
Query:  112 YTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKDRRQRQF---------PKPDPVYNSFLVSLFTSKILKNGKKTLATRIIEETFSIIQQRTSEEPLKIFERAVKNVCPSLQVKAKRVGGSTYQVPKEVNKFKGINLALCWIIRFARNRSGPTIAIKLANEIIEASKGSGNSIRKKEETHRMAKSNKAFAHF 774
            +TIT KKPNSA+RKVAR+RLTSGFE+TAYIPGIGHN QEHS+VL+RGGRVK LP VRYH+VRGTLD +GVKDR+Q +F          K DP+Y + LV +  ++ILK+GKK+LA +II      IQQ+T   PL +  +A+  V P + VKA+R+GGS++QVP E+   +G  LA+ W++  +R R G  +A KL+ E+++A+KGSG++IRKKEETHRMA++N++FAHF
Sbjct:   55 FTITAKKPNSALRKVARIRLTSGFEITAYIPGIGHNSQEHSIVLVRGGRVKYLPIVRYHIVRGTLDVVGVKDRQQGRFNSRYCRKKIAKSDPIYRNRLVHILVNRILKHGKKSLAYQIIYRAVKKIQQKTETNPLSVLRQAIHGVTPDITVKARRLGGSSHQVPIEIGSTQGKELAIRWLLVASRKRPGRNMAFKLSGELVDAAKGSGDAIRKKEETHRMAEANRSFAHF 284          
BLAST of mRNA_H-elongata_contig172885.4475.1 vs. uniprot
Match: A0A4D6NF64_VIGUN (Ribosomal protein S7 n=1 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6NF64_VIGUN)

HSP 1 Score: 270 bits (691), Expect = 2.880e-84
Identity = 136/247 (55.06%), Postives = 183/247 (74.09%), Query Frame = 1
Query:  115 TITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKDRRQ----------RQFP----------------KPDPVYNSFLVSLFTSKILKNGKKTLATRIIEETFSIIQQRTSEEPLKIFERAVKNVCPSLQVKAKRVGGSTYQVPKEVNKFKGINLALCWIIRFARNRSGPTIAIKLANEIIEASKGSGNSIRKKEETHRMAKSNKAFAHFR 777
            TITPKKPNSA+RKVARVRLTSGFE+TAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYH+VRGTLD++GVKDR+Q          ++ P                K DP+Y + LV++  ++ILK+GKK+LA +I+ +    IQQ+T    L +  +A++ V P + VKA+ VGGST+QVP E+   +G +LA+ W++  +R RSGP +A KL++E+++A+KGSG++IRKKEET R  ++N+AFAHFR
Sbjct:  295 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSTLIKVLKKRIPPFTLMSWRGTTEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYQAMKKIQQKTETNQLSVLRQAIRGVTPDIAVKARSVGGSTHQVPVEIGSVQGKSLAIRWLLGASRKRSGPNMAFKLSSELVDAAKGSGDAIRKKEETRRKTEANRAFAHFR 541          
BLAST of mRNA_H-elongata_contig172885.4475.1 vs. uniprot
Match: A0A538BJP3_9ACTN (30S ribosomal protein S7 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538BJP3_9ACTN)

HSP 1 Score: 259 bits (661), Expect = 1.660e-83
Identity = 136/259 (52.51%), Postives = 189/259 (72.97%), Query Frame = 1
Query:    1 MPTIQQLVRTTRKKVQTRTKSPALKNCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKDRRQRQFPKPDPVYNSFLVSLFTSKILKNGKKTLATRIIEETFSIIQQRTSEEPLKIFERAVKNVCPSLQVKAKRVGGSTYQVPKEVNKFKGINLALCWIIRFARNRSGPTIAIKLANEIIEASKGSGNSIRKKEETHRMAKSNKAFAHFR 777
            MPTIQQLVR  R+  + + K+PALK  PQRRGVCTRV+TITP+KPNSA+RKVARVRLT+G EVT YIPG GHNLQEHS+VL+ GG  KDL GVRY +VRGTLD+ G              VY + LV+   +++L +GKKT+A  I+ +    I Q+T+ +P    +RAV+NV P L+VK++RVGG++YQVP EV   +G  LA+ W++ F+R R   +++ +L  EI++AS G+G +++++E+ H+MA++NKAFAH+R
Sbjct:    1 MPTIQQLVRKGRETPKKKNKAPALKANPQRRGVCTRVWTITPRKPNSALRKVARVRLTTGVEVTCYIPGEGHNLQEHSIVLVHGGGPKDLGGVRYTIVRGTLDTAGA-------------VYQNPLVTQLINRVLLSGKKTVAEHIVYDALEQISQKTANDPAITLKRAVENVRPLLEVKSRRVGGASYQVPVEVKPQRGTTLAMRWLVNFSRARRENSMSERLVAEIMDASNGAGAAVKRREDMHKMAEANKAFAHYR 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172885.4475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6UA20_9STRA7.540e-9796.0830S ribosomal protein S7, chloroplastic n=1 Tax=Sc... [more]
A0A812SXH1_SYMMI3.650e-9653.85Ribosomal protein S7 n=1 Tax=Symbiodinium microadr... [more]
R6G9Q3_9BIFI2.700e-9149.67Multifunctional fusion protein n=28 Tax=Bacteria T... [more]
A0A328DPV2_9ASTE1.420e-8959.13Ribosomal protein S7 n=5 Tax=Pentapetalae TaxID=14... [more]
X8CAM0_MYCXE5.990e-8953.41Multifunctional fusion protein n=1 Tax=Mycobacteri... [more]
A0A6A5L6M8_LUPAL1.160e-8755.21Ribosomal_S7 domain-containing protein n=3 Tax=cel... [more]
A0A445BJ13_ARAHY5.400e-8655.28Ribosomal protein S7 n=1 Tax=Arachis hypogaea TaxI... [more]
K4D762_SOLLC1.230e-8456.52Ribosomal protein S7 n=1 Tax=Solanum lycopersicum ... [more]
A0A4D6NF64_VIGUN2.880e-8455.06Ribosomal protein S7 n=1 Tax=Vigna unguiculata Tax... [more]
A0A538BJP3_9ACTN1.660e-8352.5130S ribosomal protein S7 n=1 Tax=Actinomycetia bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172885contigH-elongata_contig172885:307..1188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score276.6
Seed ortholog evalue1.2e-71
Seed eggNOG ortholog3827.XP_004514805.1
Preferred namerps7
KEGG koko:K02992
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
EggNOG OGs37JZ5@33090,3GGCG@35493,4JQAD@91835,COG0048@1,COG0049@1,COG1007@1,KOG1750@2759,KOG3291@2759,KOG4668@2759
COG Functional cat.J
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons2
Model size783
Cds size783
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930006.071799-CDS-H-elongata_contig172885:306..7491622930006.071799-CDS-H-elongata_contig172885:306..749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172885 307..749 -
1691679243.0093417-CDS-H-elongata_contig172885:306..7491691679243.0093417-CDS-H-elongata_contig172885:306..749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172885 307..749 -
1622930006.0881736-CDS-H-elongata_contig172885:848..11881622930006.0881736-CDS-H-elongata_contig172885:848..1188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172885 849..1188 -
1691679243.033793-CDS-H-elongata_contig172885:848..11881691679243.033793-CDS-H-elongata_contig172885:848..1188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172885 849..1188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172885.4475.1prot_H-elongata_contig172885.4475.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172885 307..1188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172885.4475.1

>prot_H-elongata_contig172885.4475.1 ID=prot_H-elongata_contig172885.4475.1|Name=mRNA_H-elongata_contig172885.4475.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
MPTIQQLVRTTRKKVQTRTKSPALKNCPQRRGVCTRVYTITPKKPNSAIR
KVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRG
TLDSIGVKDRRQRQFPKPDPVYNSFLVSLFTSKILKNGKKTLATRIIEET
FSIIQQRTSEEPLKIFERAVKNVCPSLQVKAKRVGGSTYQVPKEVNKFKG
INLALCWIIRFARNRSGPTIAIKLANEIIEASKGSGNSIRKKEETHRMAK
SNKAFAHFRS*
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mRNA from alignment at H-elongata_contig172885:307..1188-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172885.4475.1 ID=mRNA_H-elongata_contig172885.4475.1|Name=mRNA_H-elongata_contig172885.4475.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=882bp|location=Sequence derived from alignment at H-elongata_contig172885:307..1188- (Himanthalia elongata Himel1 dioecious)
ATGCCTACAATACAACAATTAGTTCGAACAACTCGCAAAAAAGTTCAAAC ACGGACAAAATCCCCTGCATTAAAAAACTGTCCTCAGCGTCGCGGAGTAT GTACACGAGTCTACACTATTACTCCAAAAAAACCTAATTCTGCTATAAGA AAAGTTGCTAGAGTACGATTAACATCTGGATTTGAAGTAACAGCTTATAT ACCAGGAATTGGGCATAATTTACAAGAACATTCAGTTGTATTACTACGGG GTGGAAGAGTTAAAGATTTACCTGGAGTACGATATCATGTTGTACGAGGA ACGCTTGATAGTATTGGTGTAAAAGATAGACGTCAGCGTCGTTCAAAATA TGGGACTAAAAAACCAAGAAAATAATTTAATTATCAATAGGGAGGATAAA GAAGAATCATTATGTCACGCCGTTCAAATAAAAAAAGAGAATTTCCCAAA CCTGATCCAGTTTATAATAGTTTTTTAGTAAGTTTATTTACATCAAAGAT ATTAAAAAATGGTAAAAAAACTTTAGCAACACGAATTATTGAAGAAACCT TTAGTATAATACAACAACGAACTAGTGAGGAACCGTTAAAAATTTTTGAG CGTGCTGTAAAAAATGTTTGCCCATCTTTACAAGTAAAAGCAAAGCGTGT TGGGGGGTCAACCTATCAAGTGCCTAAAGAAGTAAATAAGTTTAAAGGAA TAAATCTAGCCTTATGTTGGATAATAAGATTTGCTCGAAATCGATCCGGT CCAACAATCGCAATAAAATTGGCCAATGAAATTATAGAGGCTTCAAAAGG TAGCGGTAATTCTATTCGAAAGAAAGAAGAAACACATCGAATGGCAAAAT CTAATAAAGCATTTGCACATTTTCGCTCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig172885:307..1188-

>mRNA_H-elongata_contig172885.4475.1 ID=mRNA_H-elongata_contig172885.4475.1|Name=mRNA_H-elongata_contig172885.4475.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig172885:307..1188- (Himanthalia elongata Himel1 dioecious)
ATGCCTACAATACAACAATTAGTTCGAACAACTCGCAAAAAAGTTCAAAC
ACGGACAAAATCCCCTGCATTAAAAAACTGTCCTCAGCGTCGCGGAGTAT
GTACACGAGTCTACACTATTACTCCAAAAAAACCTAATTCTGCTATAAGA
AAAGTTGCTAGAGTACGATTAACATCTGGATTTGAAGTAACAGCTTATAT
ACCAGGAATTGGGCATAATTTACAAGAACATTCAGTTGTATTACTACGGG
GTGGAAGAGTTAAAGATTTACCTGGAGTACGATATCATGTTGTACGAGGA
ACGCTTGATAGTATTGGTGTAAAAGATAGACGTCAGCGTCATGCCTACAA
TACAACAATTAGTTCGAACAACTCGCAAAAAAGTTCAAACACGGACAAAA
TCCCCTGCATTAAAAAACTGTCCTCAGCGTCGCGGAGTATGTACACGAGT
CTACACTATTACTCCAAAAAAACCTAATTCTGCTATAAGAAAAGTTGCTA
GAGTACGATTAACATCTGGATTTGAAGTAACAGCTTATATACCAGGAATT
GGGCATAATTTACAAGAACATTCAGTTGTATTACTACGGGGTGGAAGAGT
TAAAGATTTACCTGGAGTACGATATCATGTTGTACGAGGAACGCTTGATA
GTATTGGTGTAAAAGATAGACGTCAGCGTCAATTTCCCAAACCTGATCCA
GTTTATAATAGTTTTTTAGTAAGTTTATTTACATCAAAGATATTAAAAAA
TGGTAAAAAAACTTTAGCAACACGAATTATTGAAGAAACCTTTAGTATAA
TACAACAACGAACTAGTGAGGAACCGTTAAAAATTTTTGAGCGTGCTGTA
AAAAATGTTTGCCCATCTTTACAAGTAAAAGCAAAGCGTGTTGGGGGGTC
AACCTATCAAGTGCCTAAAGAAGTAAATAAGTTTAAAGGAATAAATCTAG
CCTTATGTTGGATAATAAGATTTGCTCGAAATCGATCCGGTCCAACAATC
GCAATAAAATTGGCCAATGAAATTATAGAGGCTTCAAAAGGTAGCGGTAA
TTCTATTCGAAAGAAAGAAGAAACACATCGAATGGCAAAATCTAATAAAG
CATTTGCACATTTTCGCTCATAAAATTTCCCAAACCTGATCCAGTTTATA
ATAGTTTTTTAGTAAGTTTATTTACATCAAAGATATTAAAAAATGGTAAA
AAAACTTTAGCAACACGAATTATTGAAGAAACCTTTAGTATAATACAACA
ACGAACTAGTGAGGAACCGTTAAAAATTTTTGAGCGTGCTGTAAAAAATG
TTTGCCCATCTTTACAAGTAAAAGCAAAGCGTGTTGGGGGGTCAACCTAT
CAAGTGCCTAAAGAAGTAAATAAGTTTAAAGGAATAAATCTAGCCTTATG
TTGGATAATAAGATTTGCTCGAAATCGATCCGGTCCAACAATCGCAATAA
AATTGGCCAATGAAATTATAGAGGCTTCAAAAGGTAGCGGTAATTCTATT
CGAAAGAAAGAAGAAACACATCGAATGGCAAAATCTAATAAAGCATTTGC
ACATTTTCGCTCATAA
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