mRNA_H-elongata_contig17281.4472.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17281.4472.1
Unique NamemRNA_H-elongata_contig17281.4472.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17281.4472.1 vs. uniprot
Match: D7G576_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G576_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.740e-42
Identity = 107/192 (55.73%), Postives = 130/192 (67.71%), Query Frame = 2 
Query:  533 SRASFQEALARYEDILNAIVASSDGADAFLEACNTAFAAAREVERTAMRARRGVRARADRXXXELAXLDRPAAALVSLDTSELTEVLGEAWTSHRAIVEAVRDALSVIAAVRDEVAKGPQEREEEEERALAIRVDVAVQAAVAAESAFLQARGRVRRTKRWQRELARPEAALSRVRDEITALPDAELVLDLC 1108
            SRA+FQEAL RYE +L+    SSDGADAFLE C  AFAAAR V+R A+RA R VRA  +R   EL  LDRPAAAL++LD SELTE  G    S R + + VRDALS + + R EV +  +ER E +E  LA RVD AVQAA  AE  F +AR  VRR  R  ++LA PEAAL+R R++I  LP A +V +LC
Sbjct: 2250 SRAAFQEALERYESVLSVAAGSSDGADAFLERCTAAFAAARGVDRAAVRANRRVRAHKERLRRELNRLDRPAAALLALDLSELTETSGT--VSFREVAQGVRDALSAVNSARTEVEESSKERSEAQEAVLADRVDSAVQAAATAEREFREAREVVRRMNRGWQQLAGPEAALARTREDIAVLPHAGVVSELC 2439
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BLAST of mRNA_H-elongata_contig17281.4472.1 vs. uniprot
Match: A0A6H5JD75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD75_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 4.360e-42
Identity = 109/195 (55.90%), Postives = 133/195 (68.21%), Query Frame = 2 
Query:  533 SRASFQEALARYEDILNAIVASSDGADAFLEACNTAFAAAREVERTAMRARRGVRARADRXXXELAXLDRPAAALVSLDTSELTEVLGEAWTSHRAIVEAVRDALSVIAAVRDEV---AKGPQEREEEEERALAIRVDVAVQAAVAAESAFLQARGRVRRTKRWQRELARPEAALSRVRDEITALPDAELVLDLC 1108
            SRA+FQEAL RYE +L+ + ASSDGADAFLE C  AFAAAR V+R A+RA R VRA  +R   EL  LDRPAAAL++LD SELTE  G    S R + E VRDALS +++ R EV   +K   E  E +E  LA RVD AVQAA +AE  F +AR  VRR  R  ++LA PEAAL+R R++I  LP A +V +LC
Sbjct: 2312 SRAAFQEALKRYESVLSVVAASSDGADAFLERCTAAFAAARGVDRAAVRANRRVRAHKERLRWELNRLDRPAAALLALDPSELTETSGT--VSFREVAEGVRDALSAVSSARTEVEESSKAQSEGSEAQEVVLADRVDSAVQAAASAEREFREAREVVRRMNRGWQQLAGPEAALARTREDIAVLPHAGVVSELC 2504
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17281.4472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G576_ECTSI1.740e-4255.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD75_9PHAE4.360e-4255.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17281contigH-elongata_contig17281:1602..2965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_006500.1
Exons3
Model size1115
Cds size570
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17281.4472.1prot_H-elongata_contig17281.4472.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17281 2146..2965 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.8501225-UTR-H-elongata_contig17281:1601..21451622930005.8501225-UTR-H-elongata_contig17281:1601..2145Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17281 1602..2145 -
1691679242.9075649-UTR-H-elongata_contig17281:1601..21451691679242.9075649-UTR-H-elongata_contig17281:1601..2145Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17281 1602..2145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.8668-CDS-H-elongata_contig17281:2145..21811622930005.8668-CDS-H-elongata_contig17281:2145..2181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17281 2146..2181 -
1691679242.921792-CDS-H-elongata_contig17281:2145..21811691679242.921792-CDS-H-elongata_contig17281:2145..2181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17281 2146..2181 -
1622930005.8800607-CDS-H-elongata_contig17281:2237..23961622930005.8800607-CDS-H-elongata_contig17281:2237..2396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17281 2238..2396 -
1691679242.9293644-CDS-H-elongata_contig17281:2237..23961691679242.9293644-CDS-H-elongata_contig17281:2237..2396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17281 2238..2396 -
1622930005.8987417-CDS-H-elongata_contig17281:2590..29651622930005.8987417-CDS-H-elongata_contig17281:2590..2965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17281 2591..2965 -
1691679242.9369335-CDS-H-elongata_contig17281:2590..29651691679242.9369335-CDS-H-elongata_contig17281:2590..2965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17281 2591..2965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17281.4472.1

>prot_H-elongata_contig17281.4472.1 ID=prot_H-elongata_contig17281.4472.1|Name=mRNA_H-elongata_contig17281.4472.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp
VQEAHTAKLAGRSVVADSLAHAARLVRDGLSAAVNSADTSDPRGVEADEP
FLNATSQAEAAAEVVAQVLTRERLSAEQAEKERQETCSELWSASRRLEEL
DTAGVVRDDPEAVATVLEARSEVVQALVALEGVDDPAKKLGDAQVTMKRA
SMAEECFAEAQRKLQCFDAAADVLGQAESRIVPGSPCQV*
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mRNA from alignment at H-elongata_contig17281:1602..2965-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17281.4472.1 ID=mRNA_H-elongata_contig17281.4472.1|Name=mRNA_H-elongata_contig17281.4472.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1364bp|location=Sequence derived from alignment at H-elongata_contig17281:1602..2965- (Himanthalia elongata Himel1 dioecious)
GTCCAAGAAGCTCATACAGCGAAGTTGGCAGGGCGTTCTGTGGTGGCAGA
TTCGCTAGCCCATGCCGCTCGCCTGGTACGAGACGGATTGTCAGCGGCGG
TAAATTCAGCAGACACGTCAGACCCTAGGGGTGTCGAAGCAGACGAGCCC
TTTTTGAACGCGACCAGTCAAGCGGAGGCGGCGGCGGAGGTGGTGGCGCA
GGTGTTGACACGCGAGAGACTATCCGCGGAGCAGGCGGAAAAGGAAAGGC
AAGAGACGTGTTCCGAACTGTGGTCCGCATCGAGGCGACTTGAAGAACTG
GATACAGCGGGTGTTGTCAGAGACGACCCGGAGGCGGTTGCGACGGTCCT
CGAGGCGAGGTCGGAAGTGGTACAGGTGCGAAATCGCTAGCGCTGCCAGG
AATTTGGGGTGGACCTGTTTTGTCGCTTATGTTACTTTTTTCTATTCTCT
GCGAGCGAAGATTCTTGGCCCTTAATTTATGTTTGTACAAAAGCTCTCAC
ATTACGATATAATTTATACTTCGTCTTGATCTCCGGCGGGGCGCCCCACT
GTTGGGGTGCTGCGCACAGGCGCTCGTGGCGTTGGAGGGCGTCGATGACC
CCGCGAAGAAACTCGGTGACGCCCAAGTCACCATGAAGCGGGCGTCCATG
GCAGAGGAATGCTTTGCGGAGGCTCAACGCAAACTGCAATGCTTCGACGC
CGCTGCGGACGTGCTCGGTCAAGCCGAGGCCCGTGTTCATGAGGCGCAGA
CTACGATGAAGGGTGGGAGTGTTACCGCCGTCAGTCGCGCATCGTTCCAG
GAAGCCCTTGCCAGGTATGAGGACATACTGAATGCGATCGTCGCGTCCAG
CGACGGCGCGGACGCCTTCCTTGAGGCGTGCAATACCGCCTTTGCCGCCG
CAAGGGAGGTTGAGCGTACGGCAATGAGGGCGCGCCGCGGTGTGCGTGCG
CGCGCTGATCGTCGTCGGCGAGAGCTGGCGCGACTAGACAGACCCGCCGC
CGCCCTGGTCTCCCTTGACACTTCCGAGCTGACCGAAGTGCTGGGAGAGG
CGTGGACGTCTCACCGGGCAATAGTAGAGGCGGTCCGCGACGCTCTGTCG
GTGATCGCCGCGGTGCGGGATGAGGTGGCCAAGGGACCGCAGGAGCGGGA
AGAGGAAGAAGAGAGAGCCCTCGCAATTCGCGTCGACGTCGCCGTACAAG
CCGCGGTTGCCGCGGAGAGCGCATTTCTCCAGGCCCGTGGGCGTGTACGG
CGAACGAAGCGGTGGCAGCGAGAGCTGGCTCGACCCGAGGCCGCCCTCTC
AAGGGTGAGGGATGAGATCACGGCGCTTCCCGACGCGGAATTGGTTTTGG
ATCTTTGCGCTGTT
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Coding sequence (CDS) from alignment at H-elongata_contig17281:1602..2965-

>mRNA_H-elongata_contig17281.4472.1 ID=mRNA_H-elongata_contig17281.4472.1|Name=mRNA_H-elongata_contig17281.4472.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig17281:1602..2965- (Himanthalia elongata Himel1 dioecious)
GTCCAAGAAGCTCATACAGCGAAGTTGGCAGGGCGTTCTGTGGTGGCAGA
TTCGCTAGCCCATGCCGCTCGCCTGGTACGAGACGGATTGTCAGCGGCGG
TAAATTCAGCAGACACGTCAGACCCTAGGGGTGTCGAAGCAGACGAGCCC
TTTTTGAACGCGACCAGTCAAGCGGAGGCGGCGGCGGAGGTGGTGGCGCA
GGTGTTGACACGCGAGAGACTATCCGCGGAGCAGGCGGAAAAGGAAAGGC
AAGAGACGTGTTCCGAACTGTGGTCCGCATCGAGGCGACTTGAAGAACTG
GATACAGCGGGTGTTGTCAGAGACGACCCGGAGGCGGTTGCGACGGTCCT
CGAGGCGAGGTCGGAAGTGGTACAGGTCCAAGAAGCTCATACAGCGAAGT
TGGCAGGGCGTTCTGTGGTGGCAGATTCGCTAGCCCATGCCGCTCGCCTG
GTACGAGACGGATTGTCAGCGGCGGTAAATTCAGCAGACACGTCAGACCC
TAGGGGTGTCGAAGCAGACGAGCCCTTTTTGAACGCGACCAGTCAAGCGG
AGGCGGCGGCGGAGGTGGTGGCGCAGGTGTTGACACGCGAGAGACTATCC
GCGGAGCAGGCGGAAAAGGAAAGGCAAGAGACGTGTTCCGAACTGTGGTC
CGCATCGAGGCGACTTGAAGAACTGGATACAGCGGGTGTTGTCAGAGACG
ACCCGGAGGCGGTTGCGACGGTCCTCGAGGCGAGGTCGGAAGTGGTACAG
GCGCTCGTGGCGTTGGAGGGCGTCGATGACCCCGCGAAGAAACTCGGTGA
CGCCCAAGTCACCATGAAGCGGGCGTCCATGGCAGAGGAATGCTTTGCGG
AGGCTCAACGCAAACTGCAATGCTTCGACGCCGCTGCGGACGTGCTCGGT
CAAGCCGAGGCGCTCGTGGCGTTGGAGGGCGTCGATGACCCCGCGAAGAA
ACTCGGTGACGCCCAAGTCACCATGAAGCGGGCGTCCATGGCAGAGGAAT
GCTTTGCGGAGGCTCAACGCAAACTGCAATGCTTCGACGCCGCTGCGGAC
GTGCTCGGTCAAGCCGAGTCGCGCATCGTTCCAGGAAGCCCTTGCCAGGT
ATGATCGCGCATCGTTCCAGGAAGCCCTTGCCAGGTATGA
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