mRNA_H-elongata_contig17274.4468.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17274.4468.1
Unique NamemRNA_H-elongata_contig17274.4468.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig17274.4468.1 vs. uniprot
Match: A0A6H5KG66_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG66_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.370e-23
Identity = 84/201 (41.79%), Postives = 100/201 (49.75%), Query Frame = 3 
Query:  168 KEFARCRRLNEVVSAALGSKACDALENAFSAS-----------ASG--------------TPLRKTSGLFRR-----------SSVAMIFPTALSSPG--------------------GRSKEAGG---SPRAGTGYGCPLDDGEAAAAVALGALEVRRGLRFCMKVHRFREMCRPGSCVAIRKRWAYAADALEELCPGAT 593
            +E+ARCRRLN  +S+ALGS+ CD LE  F +S           +SG              TPL +TSGLFRR                      ++PG                     RS + G    S R   G G  +D  E      L A EVRR +RFCMKVHR+RE+CRPGSCVA RKRWAYAADALEELCPGA+
Sbjct:  566 EEYARCRRLNVALSSALGSRTCDTLEAEFYSSHVADRPVAGRCSSGGGSVGGGWLPLPHPTPLPRTSGLFRRLPQGPXXXXXXXXXXXXXXXXRATPGLVSGSQSXXXXXXXXXXXXLARSADGGATASSARGAAGGGATIDSAERP---WLAASEVRRAMRFCMKVHRYREICRPGSCVAFRKRWAYAADALEELCPGAS 763
[Close]
BLAST of mRNA_H-elongata_contig17274.4468.1 vs. uniprot
Match: D8LCW3_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW3_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 8.470e-22
Identity = 84/216 (38.89%), Postives = 103/216 (47.69%), Query Frame = 3 
Query:  168 KEFARCRRLNEVVSAALGSKACDALENAFSAS-----------ASG---------------TPLRKTSGLFRRSSVAMIFPTALSSPGGRSKEAGGSPRAGTGYGCPLDDG--------------------------------EAAAAVALGALEVRRGLRFCMKVHRFREMCRPGSCVAIRKRWAYAADALEELCPGATDR------NHWPTSSP 623
            +E+ARCRRLN  +S+ALGS+ACD LE  F +S           +SG               +PL +TSGLFRR  +    P    S    +     +P   +G   PL                                   ++A    L A EVRR +RFCMKVHR+RE+CRPGSCVA RKRWAYAADALEELCPGA+         HW   SP
Sbjct:  601 EEYARCRRLNVTLSSALGSRACDTLEADFYSSHAADRPVAGRGSSGXXXXXXXGWLPLPPPSPLPRTSGLFRR--LPQGPPPTTYSASAAASAVRATPGLVSGCRSPLLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATVDSAERPWLAASEVRRAMRFCMKVHRYREICRPGSCVAFRKRWAYAADALEELCPGASTAAAADLSRHWNPPSP 814
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17274.4468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG66_9PHAE3.370e-2341.79PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LCW3_ECTSI8.470e-2238.89PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17274contigH-elongata_contig17274:102..2207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue5.2e-23
Seed eggNOG ortholog2880.D8LCW3
EggNOG free text desc.Pleckstrin homology domain.
EggNOG OGs28P6I@1,2QVTE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1376
Cds size1131
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17274.4468.1prot_H-elongata_contig17274.4468.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17274 252..2112 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.4486766-UTR-H-elongata_contig17274:101..2511622930005.4486766-UTR-H-elongata_contig17274:101..251Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17274 102..251 -
1691679242.6970463-UTR-H-elongata_contig17274:101..2511691679242.6970463-UTR-H-elongata_contig17274:101..251Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17274 102..251 -
1622930005.491223-UTR-H-elongata_contig17274:2112..22071622930005.491223-UTR-H-elongata_contig17274:2112..2207Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17274 2113..2207 -
1691679242.738011-UTR-H-elongata_contig17274:2112..22071691679242.738011-UTR-H-elongata_contig17274:2112..2207Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17274 2113..2207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.4660878-CDS-H-elongata_contig17274:251..9351622930005.4660878-CDS-H-elongata_contig17274:251..935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17274 252..935 -
1691679242.7142365-CDS-H-elongata_contig17274:251..9351691679242.7142365-CDS-H-elongata_contig17274:251..935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17274 252..935 -
1622930005.4792154-CDS-H-elongata_contig17274:1665..21121622930005.4792154-CDS-H-elongata_contig17274:1665..2112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17274 1666..2112 -
1691679242.7264955-CDS-H-elongata_contig17274:1665..21121691679242.7264955-CDS-H-elongata_contig17274:1665..2112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17274 1666..2112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17274.4468.1

>prot_H-elongata_contig17274.4468.1 ID=prot_H-elongata_contig17274.4468.1|Name=mRNA_H-elongata_contig17274.4468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=377bp
MHLSRCCYYTKYMIVPVTAPILKKKEFARCRRLNEVVSAALGSKACDALE
NAFSASASGTPLRKTSGLFRRSSVAMIFPTALSSPGGRSKEAGGSPRAGT
GYGCPLDDGEAAAAVALGALEVRRGLRFCMKVHRFREMCRPGSCVAIRKR
WAYAADALEELCPGATDRNHWPTSSPSPGLGTGCTKNIVAGDEEGEPRAN
ATATSSSSPKLVLPVPDPDPAPDVAVDAASVVALEPESDDQPPVVPDGVS
VAVGRGVVDGATAGLLPEVPPSKPATASAKALPVPVATLAVGPNLLLLLP
RPPLLPVSPEKIVAVAREVQSYRDSTASGSTRLGGRGYSSPPSPPPSPSP
SPPVPPPKYLLDALLTEVSRVLGDDP*
back to top

mRNA from alignment at H-elongata_contig17274:102..2207-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17274.4468.1 ID=mRNA_H-elongata_contig17274.4468.1|Name=mRNA_H-elongata_contig17274.4468.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2106bp|location=Sequence derived from alignment at H-elongata_contig17274:102..2207- (Himanthalia elongata Himel1 dioecious)
CCCCTCACTACCAGTGTGCATGTAGAAAAGATAAAAGGCATACAGAATTA
CCAGCCCTGCCTTTATACAATATTGTTGTCATATTATTCTCTCTAATGCA
TTTGTCTCGCTGCTGCTACTACACAAAATATATGATCGTGCCCGTCACCG
CCCCGATCTTAAAAAAAAAGGAATTTGCCAGGTGCCGCCGACTGAACGAG
GTCGTCTCTGCGGCCCTGGGAAGCAAGGCTTGCGACGCTCTTGAGAACGC
TTTCTCCGCCTCGGCCTCTGGTACCCCGCTGCGGAAGACATCGGGGCTCT
TTCGACGGAGTTCGGTCGCGATGATTTTTCCGACGGCGCTATCATCTCCT
GGGGGGAGGTCTAAAGAGGCGGGAGGCTCGCCGAGGGCGGGGACTGGATA
CGGGTGTCCTCTGGACGACGGCGAAGCGGCGGCGGCGGTGGCATTAGGGG
CTCTGGAGGTTCGGCGAGGACTGCGGTTCTGTATGAAGGTTCATCGGTTC
CGAGAGATGTGTCGGCCCGGATCTTGCGTGGCTATTCGGAAGGTGAACGT
CGGTTTGAGAGGCGTGTTGCGGTAGGGACAGTGAGTGGGGGGGGGGGGGG
GGAAGGGGTGGAAGGGTTTGGCCTAGTGGTATGGCGGGGGGGAGAAATTA
AGGTCAAGATTTGTNNNNNNNNNNTTGGGAAGGTGAGCGTCGGTTTGTGG
GGCGTTGTGCGGGAGGGCCATTGGGGGGGGGGGGGGGGGAAAGGGTTGGA
AGGATTTGGCCTAGTGGATCGACGAGGGGCAGAAATTGCAGTCAAGTCTG
CTTTGCAGATCCCTACACTATCGATATCGATGTTTATAAAGAGAGATGTA
TGTTTCTTTGAGCCTACGATATGGAGGGAGTTGTACAGCATAACGCGTTT
GTAGCTGTAGCATCTTGCTTGAGTGTGATGTGCACGCGGCCGTTTTATAT
TTTAATCAAGTATACAAGGTATTAATAATATCTTAATAGTCGGTGTTAGT
ATCTTCTATCGGTAGTATCGATAATATCTCTCCTATAAATATATCTATAA
TAATATGCATCATATGCATCATATTATGTAGTGTAATATATCTAGATGGT
ACTAAAATATGAAAGGGAGTAAAAAATTATAAATTAAATTCTACCGTTAG
GAGATAATAGATAAGTGAATGATCGCCGTTCAAAAGCCAATCCCTGCTGT
GACTCTTTACTAAATATAATATAAAAATACGATTTTAACCTAAGATGAAT
TATGCCTAATGGCTCCACGCAGAGGTGGGCGTACGCGGCCGACGCGCTTG
AAGAGCTCTGTCCTGGCGCGACCGACCGAAATCACTGGCCAACCTCGAGC
CCCAGCCCAGGCCTCGGCACTGGATGTACCAAGAATATCGTTGCAGGTGA
CGAAGAGGGAGAGCCACGAGCCAATGCGACAGCCACGTCTTCTTCGTCAC
CCAAGCTCGTCTTGCCCGTCCCCGACCCCGACCCCGCCCCTGATGTGGCC
GTGGATGCGGCTTCTGTCGTGGCTCTCGAGCCGGAATCGGACGATCAACC
ACCTGTTGTTCCCGACGGGGTCTCGGTCGCCGTCGGACGGGGAGTCGTCG
ACGGAGCTACGGCTGGCCTGCTCCCGGAAGTACCGCCGTCTAAACCCGCC
ACTGCTTCTGCGAAAGCGTTGCCGGTGCCGGTGGCGACGTTAGCCGTCGG
GCCAAACCTTCTTCTCCTGCTCCCGCGGCCGCCGCTCCTGCCCGTCTCGC
CGGAGAAGATCGTCGCGGTTGCGCGAGAGGTCCAGAGCTACAGAGACAGC
ACCGCGAGCGGGAGCACGCGCCTCGGCGGGCGGGGTTATTCCTCGCCGCC
GTCTCCTCCCCCATCCCCATCCCCGTCTCCGCCAGTCCCGCCTCCAAAGT
ATCTGCTCGACGCGCTCTTGACGGAGGTTTCACGCGTGCTGGGAGATGAT
CCGTGAGCAGAGTGGAGTCGTGTGCGTGCGTGCCCGCAAAACGCCTACCC
ATGGGTTTTGTTTCTACGAGCGGGGTTAAGGGACGTGCCCAAGTTCTGCA
TACTCCAGCGGTGTTAGATCATTGACCACGCGTCATCGGGAGGATGGAGT
AGTGTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17274:102..2207-

>mRNA_H-elongata_contig17274.4468.1 ID=mRNA_H-elongata_contig17274.4468.1|Name=mRNA_H-elongata_contig17274.4468.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2262bp|location=Sequence derived from alignment at H-elongata_contig17274:102..2207- (Himanthalia elongata Himel1 dioecious)
ATGCATTTGTCTCGCTGCTGCTACTACACAAAATATATGATCGTGCCCGT
CACCGCCCCGATCTTAAAAAAAAAGGAATTTGCCAGGTGCCGCCGACTGA
ACGAGGTCGTCTCTGCGGCCCTGGGAAGCAAGGCTTGCGACGCTCTTGAG
AACGCTTTCTCCGCCTCGGCCTCTGGTACCCCGCTGCGGAAGACATCGGG
GCTCTTTCGACGGAGTTCGGTCGCGATGATTTTTCCGACGGCGCTATCAT
CTCCTGGGGGGAGGTCTAAAGAGGCGGGAGGCTCGCCGAGGGCGGGGACT
GGATACGGGTGTCCTCTGGACGACGGCGAAGCGGCGGCGGCGGTGGCATT
AGGGGCTCTGGAGGTTCGGCGAGGACTGCGGTTCTGTATGAAGGTTCATC
GGTTCCGAGAGATGTGTCGGCCCGGATCTTGCGTGGCTATTCGGAAGATG
CATTTGTCTCGCTGCTGCTACTACACAAAATATATGATCGTGCCCGTCAC
CGCCCCGATCTTAAAAAAAAAGGAATTTGCCAGGTGCCGCCGACTGAACG
AGGTCGTCTCTGCGGCCCTGGGAAGCAAGGCTTGCGACGCTCTTGAGAAC
GCTTTCTCCGCCTCGGCCTCTGGTACCCCGCTGCGGAAGACATCGGGGCT
CTTTCGACGGAGTTCGGTCGCGATGATTTTTCCGACGGCGCTATCATCTC
CTGGGGGGAGGTCTAAAGAGGCGGGAGGCTCGCCGAGGGCGGGGACTGGA
TACGGGTGTCCTCTGGACGACGGCGAAGCGGCGGCGGCGGTGGCATTAGG
GGCTCTGGAGGTTCGGCGAGGACTGCGGTTCTGTATGAAGGTTCATCGGT
TCCGAGAGATGTGTCGGCCCGGATCTTGCGTGGCTATTCGGAAGAGGTGG
GCGTACGCGGCCGACGCGCTTGAAGAGCTCTGTCCTGGCGCGACCGACCG
AAATCACTGGCCAACCTCGAGCCCCAGCCCAGGCCTCGGCACTGGATGTA
CCAAGAATATCGTTGCAGGTGACGAAGAGGGAGAGCCACGAGCCAATGCG
ACAGCCACGTCTTCTTCGTCACCCAAGCTCGTCTTGCCCGTCCCCGACCC
CGACCCCGCCCCTGATGTGGCCGTGGATGCGGCTTCTGTCGTGGCTCTCG
AGCCGGAATCGGACGATCAACCACCTGTTGTTCCCGACGGGGTCTCGGTC
GCCGTCGGACGGGGAGTCGTCGACGGAGCTACGGCTGGCCTGCTCCCGGA
AGTACCGCCGTCTAAACCCGCCACTGCTTCTGCGAAAGCGTTGCCGGTGC
CGGTGGCGACGTTAGCCGTCGGGCCAAACCTTCTTCTCCTGCTCCCGCGG
CCGCCGCTCCTGCCCGTCTCGCCGGAGAAGATCGTCGCGGTTGCGCGAGA
GGTCCAGAGCTACAGAGACAGCACCGCGAGCGGGAGCACGCGCCTCGGCG
GGCGGGGTTATTCCTCGCCGCCGTCTCCTCCCCCATCCCCATCCCCGTCT
CCGCCAGTCCCGCCTCCAAAGTATCTGCTCGACGCGCTCTTGACGGAGGT
TTCACGCGTGCTGGGAGATGATCCGTGAAGGTGGGCGTACGCGGCCGACG
CGCTTGAAGAGCTCTGTCCTGGCGCGACCGACCGAAATCACTGGCCAACC
TCGAGCCCCAGCCCAGGCCTCGGCACTGGATGTACCAAGAATATCGTTGC
AGGTGACGAAGAGGGAGAGCCACGAGCCAATGCGACAGCCACGTCTTCTT
CGTCACCCAAGCTCGTCTTGCCCGTCCCCGACCCCGACCCCGCCCCTGAT
GTGGCCGTGGATGCGGCTTCTGTCGTGGCTCTCGAGCCGGAATCGGACGA
TCAACCACCTGTTGTTCCCGACGGGGTCTCGGTCGCCGTCGGACGGGGAG
TCGTCGACGGAGCTACGGCTGGCCTGCTCCCGGAAGTACCGCCGTCTAAA
CCCGCCACTGCTTCTGCGAAAGCGTTGCCGGTGCCGGTGGCGACGTTAGC
CGTCGGGCCAAACCTTCTTCTCCTGCTCCCGCGGCCGCCGCTCCTGCCCG
TCTCGCCGGAGAAGATCGTCGCGGTTGCGCGAGAGGTCCAGAGCTACAGA
GACAGCACCGCGAGCGGGAGCACGCGCCTCGGCGGGCGGGGTTATTCCTC
GCCGCCGTCTCCTCCCCCATCCCCATCCCCGTCTCCGCCAGTCCCGCCTC
CAAAGTATCTGCTCGACGCGCTCTTGACGGAGGTTTCACGCGTGCTGGGA
GATGATCCGTGA
back to top