mRNA_H-elongata_contig17270.4465.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17270.4465.1
Unique NamemRNA_H-elongata_contig17270.4465.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: D7FQ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ41_ECTSI)

HSP 1 Score: 335 bits (858), Expect = 4.490e-102
Identity = 177/312 (56.73%), Postives = 212/312 (67.95%), Query Frame = 1
Query:    1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANLL 936
            LG+ HQ LESPALR SL+MS +QTGV++T ++P  PA++ LRKGDV+MKVDGI VANDGSIPFR GERV+L+YYMSQLFP DK  VELLRD  +M VTV L+VS+FLCPVHFGGR PSYF+LGGLVFTVMS PYLE                                                            E++E AGGL+HLLS A+HG + + DE+IVIL QVLAHE+N GY G  NMQLL+FNG RV SLKHL RL D N + FLRF+LF +++IVL+AAGVP AT QIC DNSIP+PRS++L+
Sbjct:  231 LGITHQHLESPALRGSLRMSPQQTGVMITGVQPTCPAVNVLRKGDVIMKVDGIRVANDGSIPFRAGERVALKYYMSQLFPEDKTEVELLRDDSVMSVTVPLYVSDFLCPVHFGGRAPSYFVLGGLVFTVMSAPYLE-----------------------------------------------------------HEIEEGAGGLAHLLSTAEHGVRASNDEDIVILTQVLAHEVNVGYEGFSNMQLLSFNGERVKSLKHLVRLADANRQEFLRFELFRDRLIVLEAAGVPDATTQICKDNSIPSPRSSDLV 483          
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A0A6H5KXW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW0_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 9.130e-81
Identity = 156/312 (50.00%), Postives = 183/312 (58.65%), Query Frame = 1
Query:    1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANLL 936
            LG+ HQ LESPALR SL+MS +QTGV+VT ++P  PA++ LRKGDV+MKVDGI VANDGSIPFR GERV+L+YYMSQLFP DK  VELLRD  +M VTV L VS+ LCPVHFGGR PSYF+LGGLVFTVMS PYLEV                                                                                             LAHE+N GY G  NMQLL+FNG RV SL+HL RL D N + FLRF+LF +++IVL+AAGVP AT QIC DNSIP+PRS++L+
Sbjct:  239 LGITHQHLESPALRGSLRMSPQQTGVMVTCVQPTYPAVNVLRKGDVIMKVDGIRVANDGSIPFRAGERVALKYYMSQLFPEDKTEVELLRDDSVMSVTVPLSVSDVLCPVHFGGRAPSYFVLGGLVFTVMSAPYLEV---------------------------------------------------------------------------------------------LAHEVNVGYEGFSNMQLLSFNGERVKSLRHLVRLADANRQEFLRFELFRDRLIVLEAAGVPDATTQICKDNSIPSPRSSDLV 457          
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A0A835ZA79_9STRA (Trypsin-like cysteine/serine peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA79_9STRA)

HSP 1 Score: 239 bits (610), Expect = 1.690e-67
Identity = 137/314 (43.63%), Postives = 178/314 (56.69%), Query Frame = 1
Query:    1 LGVIHQRLESPALRQSLKM--SSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDG-NTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANL 933
            LG   Q LESP LR SL+M  ++  TGVLV+ ++  APA   LR GDV++ VDGI VANDGS+PFR GERV+LRYY SQLF GD V+V LLRD     VT  L V   LCP+HF G PP+Y ++GGLVFTV+S PYL  ++   +S  A                                                         L HL++LA  G++   DEE+VIL QVLAH  N GY G++N+ LL FNG  V+SL+HL  LVD      ++RFD +P++++V+DAA +   T ++C DN+IPA RS  L
Sbjct:  214 LGAGLQFLESPTLRASLRMDDATGMTGVLVSDVDATAPAAAVLRPGDVILSVDGIQVANDGSVPFREGERVALRYYFSQLFRGDAVSVTLLRDGAAATVTAPLCVPGHLCPIHFDGAPPAYAVVGGLVFTVLSEPYLREALEAHRSAFA---------------------------------------------------------LPHLVALAHFGKRARADEEVVILTQVLAHPANLGYEGMENLHLLKFNGEPVSSLRHLCALVDACGAAGYMRFDFYPDRVVVMDAAQLSRCTAEVCEDNAIPASRSKAL 470          
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A0A1D6NRH4_MAIZE (Protease Do-like 9 n=3 Tax=Zea mays TaxID=4577 RepID=A0A1D6NRH4_MAIZE)

HSP 1 Score: 179 bits (454), Expect = 5.530e-48
Identity = 105/304 (34.54%), Postives = 158/304 (51.97%), Query Frame = 1
Query:   22 LESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANL 933
            +E+P LR+++ M + Q GV V  +EP AP    L+  D+V+  DGI++ANDG++PFR GER+   Y +SQ + G+K  V++L +  +    + L +++ L P H  GRPPSY+I+ G VF V+S PYL                                     S +A C  G                 D +      LL    H   Q+ DE++V+++QVL  ++N GY  + N+Q+LAFNG  VT+LKHLA +V+   E FL+FDL  +Q++VL+     AAT  I   + IP+  S +L
Sbjct:    1 MENPDLRKAMGMKANQKGVRVRRVEPTAPETGCLQPSDIVLSFDGIDIANDGTVPFRRGERIGFSYLVSQKYTGEKARVKVLPNSNVHEFNIKLAINKRLIPAHIKGRPPSYYIVAGFVFMVVSVPYLR------------------------------------SESAICQYG----------------KDYEYDAPVKLLDKHLHAMAQSSDEQLVVVSQVLVADINIGYEDIVNIQVLAFNGTPVTNLKHLATMVEECNEAFLKFDLDHDQVVVLETKTAKAATQDIVTTHCIPSAVSEDL 252          
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: K3XVZ6_SETIT (Uncharacterized protein n=15 Tax=Panicoideae TaxID=147369 RepID=K3XVZ6_SETIT)

HSP 1 Score: 186 bits (472), Expect = 4.390e-47
Identity = 109/311 (35.05%), Postives = 161/311 (51.77%), Query Frame = 1
Query:    1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANL 933
            LG+  Q++E+P LR+++ M S+Q GV V  +EP AP    L   D+++  DGI++ANDG++PFRHGER+   Y +SQ + G+K  V+LLR+  +    + L   + L P H  GRPPSY+I+ G VFTV+S PYL                                                 R +Y          D +      LL    H   Q+ DE++V+++QVL  ++N GY  + N+Q+LAFNG  V +LKHLA +V+   E FL+FDL  +Q++VL+     AAT  I   + IP+  S +L
Sbjct:  349 LGIEWQKMENPDLRKAMGMKSDQKGVRVRRVEPTAPESGCLHPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGEKARVKLLRNSKIHEFNIKLATHKRLIPAHIKGRPPSYYIVAGFVFTVVSVPYL-------------------------------------------------RSEYGK--------DYEYDAPVKLLDKHSHAMAQSPDEQLVVVSQVLVSDINIGYEDIVNIQVLAFNGTPVKNLKHLATMVEECNEAFLKFDLDYDQLVVLETKTAKAATQDILTTHCIPSAMSEDL 602          
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A0A1Y1IJZ9_KLENI (HrtA/DegP protease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJZ9_KLENI)

HSP 1 Score: 187 bits (474), Expect = 4.620e-47
Identity = 111/312 (35.58%), Postives = 166/312 (53.21%), Query Frame = 1
Query:    1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANLL 936
            LG+  QR+ESPALRQSL + ++Q GVL+  +EP + A + L++GDV++  DGI +ANDG++PFR GER+S  Y +SQ +  +   + + R    + V V L + + L PVH  G+ PSYFI+ GLVFT +  PYLE                                                         TP ++      L  +L    HG  ++ DE++V+L+QVLAH+ N GY  L N  ++  NGV + ++K LA LV+   +PFL+FDL   +++VL+ A    AT Q+  D+ IP+ RSA+L+
Sbjct:  380 LGIAWQRMESPALRQSLGLRNDQKGVLIRRLEPTSFAYNVLKEGDVILSFDGIPIANDGTVPFRSGERISFGYLVSQKYTSETATLRVSRQGEEVDVDVRLRIPKRLVPVHIFGKNPSYFIIAGLVFTPVCQPYLESEYGSDYDY-----------------------------------------------DTPVKL------LDRML----HGMARSDDEQVVVLSQVLAHDENIGYEDLSNRVVIRLNGVEIRNIKQLAELVESCQDPFLKFDLEYNEMLVLENAAARRATAQVLQDHCIPSARSADLV 634          
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A0A2K1K6G7_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K6G7_PHYPA)

HSP 1 Score: 185 bits (469), Expect = 1.390e-46
Identity = 110/318 (34.59%), Postives = 168/318 (52.83%), Query Frame = 1
Query:    1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANLLPPKAAP 954
            +GV+ Q+LE+PALR  LKM  +Q GVLV  +EP +PA   +++GDV++  D I VAN+G++PFR GER+S  + +SQ F GD    ++LRD  ++ +  +L     L PVH  G+ PSY I+ GLVFT + NPYLE S  GQ                                                        D +      +L  ++HG  +  DE++V+++QVLA+++N GY  + N  +  FNGV++ +L+HLA L+D  T+ F+RF+L    ++VL+     + T +I  DN +P  RS +L+   A P
Sbjct:  344 MGVLWQKLENPALRAFLKMKPDQKGVLVRRVEPTSPAFQAIKEGDVLLSFDNIPVANEGTVPFRAGERISFGFLISQKFSGDTAKCKMLRDGEVIEIETTLKAPVHLVPVHIEGKLPSYLIVAGLVFTPVCNPYLE-SEYGQ--------------------------------------------------------DFEYDAPVKILEKSRHGMAEFDDEQLVVVSQVLANDVNIGYEEIANTLVKTFNGVKIRNLRHLADLIDTCTDDFMRFELDYCSLVVLETKVARSVTPKILEDNCVPTDRSQDLITSAALP 604          
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A0A6P6T9Q9_COFAR (protease Do-like 9 n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6T9Q9_COFAR)

HSP 1 Score: 184 bits (466), Expect = 2.150e-46
Identity = 109/311 (35.05%), Postives = 158/311 (50.80%), Query Frame = 1
Query:    1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANL 933
            LGV  Q++E+P LR ++ M+S Q GV +  IEP AP    L+  DV++  DG+N+ANDG++PFRHGER+   Y +SQ + GD  AV++LR+  +   ++ L   + L P H   +PPSY+I+GG VFT +S PYL      +    A V                                                          LL    HG  Q+ DE++V+++QVL  ++N GY  + N Q++AFNG  V +LK LA +V+   E FL+FDL  +QI+VL      AAT  I   + IP+P S +L
Sbjct:  330 LGVEWQKMENPDLRMAMGMTSNQKGVRIRRIEPTAPESHVLKPSDVIISFDGVNIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRNSVMFEFSIKLATHKRLIPAHIREKPPSYYIVGGFVFTAVSVPYLRSEYGKEYEFEAPVK---------------------------------------------------------LLDKHLHGMAQSVDEQVVLVSQVLVADINIGYEEIVNTQVMAFNGKPVKNLKILAAMVEACDEEFLKFDLEYDQIVVLQTKSAKAATADILAMHCIPSPMSDDL 583          
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A9T734_PHYPA (Predicted protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9T734_PHYPA)

HSP 1 Score: 181 bits (458), Expect = 3.170e-46
Identity = 108/311 (34.73%), Postives = 159/311 (51.13%), Query Frame = 1
Query:    1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANL 933
            LG+  Q++E+P LR++L M S Q GV +  +EP APA   LR  D++M  DGI++ANDG++PFRHGER+   Y +S+ + G+   V++LRD       + L   + L P H  G+PPSY+IL G+VF  +S PYL           A V +                                                     L  LL    H   Q++DE++V+++QVL  ++N GY  + N Q++AFN   V +LKHLA LV+  T+PFLRF L  +QI++L+     AAT +I   + IP+  S +L
Sbjct:  210 LGIEWQKMENPDLRKALGMKSTQKGVRIRRVEPTAPAFAQLRASDILMSFDGIDIANDGTVPFRHGERIGFSYLVSKKYSGECAKVKILRDGKSKEFDIDLVNHKRLVPAHIKGKPPSYYILAGIVFAAISVPYLRSEYGKDYDYDAPVKL-----------------------------------------------------LDKLL----HSMSQSEDEQLVVVSQVLVADINIGYEDIVNTQVVAFNDTPVRNLKHLANLVEKCTDPFLRFGLDYQQIVILETQTAKAATPEILATHCIPSAMSHDL 463          
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A0A1Y1I8A1_KLENI (HrtA/DegP protease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I8A1_KLENI)

HSP 1 Score: 184 bits (466), Expect = 5.280e-46
Identity = 111/311 (35.69%), Postives = 162/311 (52.09%), Query Frame = 1
Query:    1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANL 933
            LG+  Q++E+P LR++L M+  Q GV V  +EP AP+ + L+  D+++  DG++VANDG++PFR GER++  Y +SQ + G+   + +LR+     V V L     L PVH GG+PPSY+I+ GLVFT +S PYL                                 A  +  N                     E D        LL    H      D+++V+++QVL  ++N GY  + N Q+L FNG RV +LKHLA +V+  T PFLRFDL  +Q++VL+ A   AAT  I   + IP+ RS +L
Sbjct:  392 LGIEWQKMENPQLRKALGMTDHQKGVRVRRVEPTAPSAEQLQASDILLSFDGVDVANDGTVPFRRGERIAFSYLVSQRYTGETARLTILREGREHQVQVKLGSHNRLVPVHTGGKPPSYYIVAGLVFTPVSVPYL---------------------------------ASEYGKNF--------------------EFDAPV----KLLDKMMHVMADAPDQQVVVVSQVLVADINIGYEEIVNTQVLRFNGTRVNNLKHLAAMVEAATAPFLRFDLEYDQVMVLETAAAKAATPSILKTHRIPSARSEDL 645          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ41_ECTSI4.490e-10256.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXW0_9PHAE9.130e-8150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZA79_9STRA1.690e-6743.63Trypsin-like cysteine/serine peptidase domain-cont... [more]
A0A1D6NRH4_MAIZE5.530e-4834.54Protease Do-like 9 n=3 Tax=Zea mays TaxID=4577 Rep... [more]
K3XVZ6_SETIT4.390e-4735.05Uncharacterized protein n=15 Tax=Panicoideae TaxID... [more]
A0A1Y1IJZ9_KLENI4.620e-4735.58HrtA/DegP protease n=1 Tax=Klebsormidium nitens Ta... [more]
A0A2K1K6G7_PHYPA1.390e-4634.59Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A6P6T9Q9_COFAR2.150e-4635.05protease Do-like 9 n=3 Tax=Coffea TaxID=13442 RepI... [more]
A9T734_PHYPA3.170e-4634.73Predicted protein n=2 Tax=Physcomitrium patens Tax... [more]
A0A1Y1I8A1_KLENI5.280e-4635.69HrtA/DegP protease n=1 Tax=Klebsormidium nitens Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17270contigH-elongata_contig17270:1..3203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.4
Seed ortholog evalue3.4e-82
Seed eggNOG ortholog2880.D7FQ41
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0265@1,KOG1320@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-01_007570.1
Exons7
Model size2094
Cds size1305
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.0591445-UTR-H-elongata_contig17270:0..541622930005.0591445-UTR-H-elongata_contig17270:0..54Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17270 1..54 +
1691679242.4293113-UTR-H-elongata_contig17270:0..541691679242.4293113-UTR-H-elongata_contig17270:0..54Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17270 1..54 +
1622930005.1624718-UTR-H-elongata_contig17270:2201..27001622930005.1624718-UTR-H-elongata_contig17270:2201..2700Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17270 2202..2700 +
1691679242.526528-UTR-H-elongata_contig17270:2201..27001691679242.526528-UTR-H-elongata_contig17270:2201..2700Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17270 2202..2700 +
1622930005.1813388-UTR-H-elongata_contig17270:2967..32031622930005.1813388-UTR-H-elongata_contig17270:2967..3203Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17270 2968..3203 +
1691679242.5362513-UTR-H-elongata_contig17270:2967..32031691679242.5362513-UTR-H-elongata_contig17270:2967..3203Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17270 2968..3203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.0782928-CDS-H-elongata_contig17270:54..961622930005.0782928-CDS-H-elongata_contig17270:54..96Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17270 55..96 +
1691679242.4407625-CDS-H-elongata_contig17270:54..961691679242.4407625-CDS-H-elongata_contig17270:54..96Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17270 55..96 +
1622930005.0898526-CDS-H-elongata_contig17270:395..5481622930005.0898526-CDS-H-elongata_contig17270:395..548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17270 396..548 +
1691679242.4528008-CDS-H-elongata_contig17270:395..5481691679242.4528008-CDS-H-elongata_contig17270:395..548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17270 396..548 +
1622930005.102349-CDS-H-elongata_contig17270:710..9891622930005.102349-CDS-H-elongata_contig17270:710..989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17270 711..989 +
1691679242.4612482-CDS-H-elongata_contig17270:710..9891691679242.4612482-CDS-H-elongata_contig17270:710..989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17270 711..989 +
1622930005.115381-CDS-H-elongata_contig17270:1017..10741622930005.115381-CDS-H-elongata_contig17270:1017..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17270 1018..1074 +
1691679242.4800014-CDS-H-elongata_contig17270:1017..10741691679242.4800014-CDS-H-elongata_contig17270:1017..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17270 1018..1074 +
1622930005.1295097-CDS-H-elongata_contig17270:1143..12451622930005.1295097-CDS-H-elongata_contig17270:1143..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17270 1144..1245 +
1691679242.4937925-CDS-H-elongata_contig17270:1143..12451691679242.4937925-CDS-H-elongata_contig17270:1143..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17270 1144..1245 +
1622930005.1467319-CDS-H-elongata_contig17270:1529..22011622930005.1467319-CDS-H-elongata_contig17270:1529..2201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17270 1530..2201 +
1691679242.515502-CDS-H-elongata_contig17270:1529..22011691679242.515502-CDS-H-elongata_contig17270:1529..2201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17270 1530..2201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17270.4465.1prot_H-elongata_contig17270.4465.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17270 55..2201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17270.4465.1

>prot_H-elongata_contig17270.4465.1 ID=prot_H-elongata_contig17270.4465.1|Name=mRNA_H-elongata_contig17270.4465.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=435bp
MSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGER
VSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPS
YFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLL
AGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQ
NKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGN
TEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANLLPPKAAP
ANVSGEASESNEEEGYEETGIAMDGQPLPAINGAPQPSVSETVAMLADAR
KRGIQGRRLDGREGSRLRSLASAAIGRLRGSILRSGVGDQRVTGRAHRDA
SFGSWGRQARKSKFLASSRGRRRGQSREIRRSRP*
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mRNA from alignment at H-elongata_contig17270:1..3203+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17270.4465.1 ID=mRNA_H-elongata_contig17270.4465.1|Name=mRNA_H-elongata_contig17270.4465.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3203bp|location=Sequence derived from alignment at H-elongata_contig17270:1..3203+ (Himanthalia elongata Himel1 dioecious)
TTGGGCGTTATACACCAGCGGTTGGAGAGCCCGGCGCTTCGGCAAAGCCT CAAGATGTCGTCGGAGCAGACGGGCGTCCTAGTGACCAGCATAGAGGTCG GAACCTCACTGATAAAGTACCCATGTACTATATTTGCGCCCGACTTACTG TCGTTTCTTGTTACACCCCTCCACCTCTTTTCTCGATTCGTTTTTAGCTG GCGTTGATCACCATTGCCCACAAATAGGTAAACTCTAGAACGCTGTCCGG CAACCTCCATGATAATTCTCTGAGGGCGAACATGGAGCAGCCGATGCGAC CGGCGATCTTAGGGTAGAATGACGATATGTTTTTGTTGTTGTTGTATGTA TACCAACCTCAACTGACTGTCCGTGCCTTGAACGACCGTTGTCAGCCGAT GGCACCGGCGATCGATACACTGCGCAAGGGAGACGTGGTGATGAAGGTGG ACGGAATCAACGTAGCTAACGATGGGAGCATTCCCTTCCGCCACGGCGAG CGAGTTTCTCTACGGTACTACATGTCGCAGCTGTTCCCAGGGGACAAGGT GCACACGCCCTCCTAGCTTGCATGCGACGAAGACGGCCCTGGTTCCCATC CTAATGTACCATATACAGTGGTGTAAAAACGCCCTTCTTGAGAGCCATAG CATCGATGCCCTGTGCCATAAGTCAGGTACCGTGTTTCTCTGTACACCAC GATGTGGCAGGTGGCAGTCGAGCTGCTGAGGGACAGGGGGTTAATGTTTG TAACCGTGTCCCTCTTCGTATCGGAGTTCTTGTGTCCTGTGCACTTTGGC GGCCGACCGCCGAGCTACTTCATCCTCGGGGGCCTGGTGTTCACTGTCAT GTCCAACCCGTACCTGGAGGTGAGCGTGAGCGGGCAACAATCGCTGCTTG CGAGCGTCGCAGTCTCCCGCGTCCAAAACAATATGTGGCACGGTTGGTTT CACGTTCTTCTTTTAGCGGGAAGTTTCTCGAGCAACGCAGTCTTTCGCGA CCCTTGAAAGACAAAAGTATTGTTGTGTCGGGTTTGTGTCTCGTGACCAA TACCACTCGACGTCGCGCACGCCCGTGAGCAGTGATCCTATCACCCGACT GACCCCCGCTTGAATTATCTCCTACCCTACCTATGCGCGTCAGGCTGAGA TGGACGAACAAGCCGGCGGCCTCTCCCACCTTCTATCATTAGCGCAACAT GGTCGGAAGCAGAACAAGGACGAAGAGATAGTCATCTTAGCACAGGTCAG CAGGAGTGGCGTCGGTTACCCGTGTGTGGCCGTGTTCATTTCTTATTATT ATGTCATCGAGGGAAATATAGACAGTGAATAACGCAGGGGCGTCAAAATC GTAGTCGGCGATATGAAGTTGACCGGGTCGCACGATCTCTTTGAGGCAGT TTGCGCTCAAAGCTGCTGCGATGAAGAGCAAGGAGCATGACGTACATCCT TGCCGCGAAAACCCGCGCATGTATCAAACCGAAGCAATCGCCCCACCTCC TGCACCTTCGTTCTCATCACAATCAATAGGTTCTTGCTCACGAGCTGAAC GAGGGCTACGGAGGCTTGAAAAATATGCAGCTGCTGGCGTTCAACGGCGT GCGCGTCACGAGCTTAAAGCACCTTGCCCGCCTCGTGGACGGGAATACGG AGCCCTTCCTCCGCTTCGACCTATTCCCGGAGCAGATCATCGTTCTTGAC GCTGCCGGGGTCCCCGCCGCCACCGATCAGATCTGCGGGGATAACTCAAT CCCGGCTCCGCGCTCGGCAAACCTCCTGCCACCGAAGGCTGCGCCGGCGA ACGTATCAGGGGAGGCGTCAGAGAGTAACGAAGAAGAGGGTTACGAGGAG ACGGGTATCGCGATGGACGGTCAGCCCCTCCCCGCGATCAACGGGGCACC GCAACCGTCGGTCTCGGAAACAGTGGCGATGCTCGCTGACGCGCGAAAGA GAGGGATTCAGGGTCGGCGTCTGGACGGCAGGGAGGGCTCGAGATTAAGA TCCTTGGCATCGGCAGCGATCGGGAGGTTGAGGGGAAGCATCCTCAGGTC TGGGGTAGGAGACCAACGAGTAACAGGGCGAGCGCATCGGGATGCCAGTT TTGGTTCTTGGGGGAGGCAAGCCCGAAAGAGCAAGTTCTTAGCGTCGAGT CGTGGACGAAGGCGCGGACAATCGCGTGAGATTCGCCGAAGTCGTCCATG AGGAGCTTCGTCGATTGGTGTCGAGCTTGCGGGGGTTTAGTTACACTTCT CAGCGTCTCGTTGGTGTATCATCTAGCTTTGCGTAAATTTTAAATGATTA CCATGCGGCGCGTTGGCTCGAACGTTTGCGTTGTTTATAGTATCCAAAAT CCACTCTCGAACTAGCAAATATGTAAATGCAGCTGCCGACCCTATGGCAT TGTCTGTTCTCGCTTAACGTGCCGGGAAACGATCGGTGTGCTTTCCCAAA ACAACGCGCCGCCAGAGCTTGGCGTAATAAATTAGAACGCTGAACCCGGT GATATCATGGTTCCAGGGCCCTCGAGCCGCAGGCCCGATGACTCCATGAT CCATTACACCGTTTGGAGCTCTATCCCGTTGCAATCCTTCCGAGGTTTGT CCCTACGCTGGTGACTTGCCCTGACGCCGTAGCTGCCGCCGTGCCTCAAA AAATATCTTCTTCGCCTCTCGCAAACTGCCGAGATCCCCTGCCAACTCTT CCTGGGTTTTGAAGGATCAAGTACAAACGTTACCAAGGGTTTTCAAACCT GCCATTATTTTTGGCGTGATGGTTCCCCACATTACGAGAATATACCGTTC GGTTCTGCGCATTACAACTGAGTATTGCTGTACAGGTATCGAGAACATGT ACGGTACCTATTACACAGCACGTCCAAGACAGGGGTGAGTCGGCGCAGGT CACGACTGTCTGACGGCGCAATTTCATCTCGACCGTAAAGGATCCACCCC GGCACATCTTTATCGCACCTCGCCCTTGTGCCACAATCGCCACCTTGGAA CTTCGTCCGCCCGTAACTCCGCCTCGCGCTTGATAGCACCGCCACCCCGA GCACACGCCTGACATTCATCGAACTCCGTAGTCGACTTCGAAGTTGTTGA CTTGCGCGGCTTCGATTTTCCATCCTCAGTACCCGGATGTCTTTGTGGCA CTTCGTGCCGGTGTCCCGAGCTGCAGAGAGCGGCAGCGCGCGCATCGGCC AAG
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Coding sequence (CDS) from alignment at H-elongata_contig17270:1..3203+

>mRNA_H-elongata_contig17270.4465.1 ID=mRNA_H-elongata_contig17270.4465.1|Name=mRNA_H-elongata_contig17270.4465.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2610bp|location=Sequence derived from alignment at H-elongata_contig17270:1..3203+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTCGGAGCAGACGGGCGTCCTAGTGACCAGCATAGAGATGTCGTC
GGAGCAGACGGGCGTCCTAGTGACCAGCATAGAGCCGATGGCACCGGCGA
TCGATACACTGCGCAAGGGAGACGTGGTGATGAAGGTGGACGGAATCAAC
GTAGCTAACGATGGGAGCATTCCCTTCCGCCACGGCGAGCGAGTTTCTCT
ACGGTACTACATGTCGCAGCTGTTCCCAGGGGACAAGCCGATGGCACCGG
CGATCGATACACTGCGCAAGGGAGACGTGGTGATGAAGGTGGACGGAATC
AACGTAGCTAACGATGGGAGCATTCCCTTCCGCCACGGCGAGCGAGTTTC
TCTACGGTACTACATGTCGCAGCTGTTCCCAGGGGACAAGGTGGCAGTCG
AGCTGCTGAGGGACAGGGGGTTAATGTTTGTAACCGTGTCCCTCTTCGTA
TCGGAGTTCTTGTGTCCTGTGCACTTTGGCGGCCGACCGCCGAGCTACTT
CATCCTCGGGGGCCTGGTGTTCACTGTCATGTCCAACCCGTACCTGGAGG
TGAGCGTGAGCGGGCAACAATCGCTGCTTGCGAGCGTCGCAGTCTCCCGC
GTCCAAAACAATATGTGGCACGGTTGGTTTCACGTTCTTCTTTTAGCGGG
AAGTTTCTCGAGCAACGCAGTGGCAGTCGAGCTGCTGAGGGACAGGGGGT
TAATGTTTGTAACCGTGTCCCTCTTCGTATCGGAGTTCTTGTGTCCTGTG
CACTTTGGCGGCCGACCGCCGAGCTACTTCATCCTCGGGGGCCTGGTGTT
CACTGTCATGTCCAACCCGTACCTGGAGGTGAGCGTGAGCGGGCAACAAT
CGCTGCTTGCGAGCGTCGCAGTCTCCCGCGTCCAAAACAATATGTGGCAC
GGTTGGTTTCACGTTCTTCTTTTAGCGGGAAGTTTCTCGAGCAACGCATA
TTGTTGTGTCGGGTTTGTGTCTCGTGACCAATACCACTCGACGTCGCGCA
CGCCCTATTGTTGTGTCGGGTTTGTGTCTCGTGACCAATACCACTCGACG
TCGCGCACGCCCGCTGAGATGGACGAACAAGCCGGCGGCCTCTCCCACCT
TCTATCATTAGCGCAACATGGTCGGAAGCAGAACAAGGACGAAGAGATAG
TCATCTTAGCACAGGCTGAGATGGACGAACAAGCCGGCGGCCTCTCCCAC
CTTCTATCATTAGCGCAACATGGTCGGAAGCAGAACAAGGACGAAGAGAT
AGTCATCTTAGCACAGGTTCTTGCTCACGAGCTGAACGAGGGCTACGGAG
GCTTGAAAAATATGCAGCTGCTGGCGTTCAACGGCGTGCGCGTCACGAGC
TTAAAGCACCTTGCCCGCCTCGTGGACGGGAATACGGAGCCCTTCCTCCG
CTTCGACCTATTCCCGGAGCAGATCATCGTTCTTGACGCTGCCGGGGTCC
CCGCCGCCACCGATCAGATCTGCGGGGATAACTCAATCCCGGCTCCGCGC
TCGGCAAACCTCCTGCCACCGAAGGCTGCGCCGGCGAACGTATCAGGGGA
GGCGTCAGAGAGTAACGAAGAAGAGGGTTACGAGGAGACGGGTATCGCGA
TGGACGGTCAGCCCCTCCCCGCGATCAACGGGGCACCGCAACCGTCGGTC
TCGGAAACAGTGGCGATGCTCGCTGACGCGCGAAAGAGAGGGATTCAGGG
TCGGCGTCTGGACGGCAGGGAGGGCTCGAGATTAAGATCCTTGGCATCGG
CAGCGATCGGGAGGTTGAGGGGAAGCATCCTCAGGTCTGGGGTAGGAGAC
CAACGAGTAACAGGGCGAGCGCATCGGGATGCCAGTTTTGGTTCTTGGGG
GAGGCAAGCCCGAAAGAGCAAGTTCTTAGCGTCGAGTCGTGGACGAAGGC
GCGGACAATCGCGTGAGATTCGCCGAAGTCGTCCATGAGTTCTTGCTCAC
GAGCTGAACGAGGGCTACGGAGGCTTGAAAAATATGCAGCTGCTGGCGTT
CAACGGCGTGCGCGTCACGAGCTTAAAGCACCTTGCCCGCCTCGTGGACG
GGAATACGGAGCCCTTCCTCCGCTTCGACCTATTCCCGGAGCAGATCATC
GTTCTTGACGCTGCCGGGGTCCCCGCCGCCACCGATCAGATCTGCGGGGA
TAACTCAATCCCGGCTCCGCGCTCGGCAAACCTCCTGCCACCGAAGGCTG
CGCCGGCGAACGTATCAGGGGAGGCGTCAGAGAGTAACGAAGAAGAGGGT
TACGAGGAGACGGGTATCGCGATGGACGGTCAGCCCCTCCCCGCGATCAA
CGGGGCACCGCAACCGTCGGTCTCGGAAACAGTGGCGATGCTCGCTGACG
CGCGAAAGAGAGGGATTCAGGGTCGGCGTCTGGACGGCAGGGAGGGCTCG
AGATTAAGATCCTTGGCATCGGCAGCGATCGGGAGGTTGAGGGGAAGCAT
CCTCAGGTCTGGGGTAGGAGACCAACGAGTAACAGGGCGAGCGCATCGGG
ATGCCAGTTTTGGTTCTTGGGGGAGGCAAGCCCGAAAGAGCAAGTTCTTA
GCGTCGAGTCGTGGACGAAGGCGCGGACAATCGCGTGAGATTCGCCGAAG
TCGTCCATGA
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