mRNA_H-elongata_contig17270.4465.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: D7FQ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ41_ECTSI) HSP 1 Score: 335 bits (858), Expect = 4.490e-102 Identity = 177/312 (56.73%), Postives = 212/312 (67.95%), Query Frame = 1
Query: 1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANLL 936
LG+ HQ LESPALR SL+MS +QTGV++T ++P PA++ LRKGDV+MKVDGI VANDGSIPFR GERV+L+YYMSQLFP DK VELLRD +M VTV L+VS+FLCPVHFGGR PSYF+LGGLVFTVMS PYLE E++E AGGL+HLLS A+HG + + DE+IVIL QVLAHE+N GY G NMQLL+FNG RV SLKHL RL D N + FLRF+LF +++IVL+AAGVP AT QIC DNSIP+PRS++L+
Sbjct: 231 LGITHQHLESPALRGSLRMSPQQTGVMITGVQPTCPAVNVLRKGDVIMKVDGIRVANDGSIPFRAGERVALKYYMSQLFPEDKTEVELLRDDSVMSVTVPLYVSDFLCPVHFGGRAPSYFVLGGLVFTVMSAPYLE-----------------------------------------------------------HEIEEGAGGLAHLLSTAEHGVRASNDEDIVILTQVLAHEVNVGYEGFSNMQLLSFNGERVKSLKHLVRLADANRQEFLRFELFRDRLIVLEAAGVPDATTQICKDNSIPSPRSSDLV 483
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A0A6H5KXW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW0_9PHAE) HSP 1 Score: 276 bits (707), Expect = 9.130e-81 Identity = 156/312 (50.00%), Postives = 183/312 (58.65%), Query Frame = 1
Query: 1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANLL 936
LG+ HQ LESPALR SL+MS +QTGV+VT ++P PA++ LRKGDV+MKVDGI VANDGSIPFR GERV+L+YYMSQLFP DK VELLRD +M VTV L VS+ LCPVHFGGR PSYF+LGGLVFTVMS PYLEV LAHE+N GY G NMQLL+FNG RV SL+HL RL D N + FLRF+LF +++IVL+AAGVP AT QIC DNSIP+PRS++L+
Sbjct: 239 LGITHQHLESPALRGSLRMSPQQTGVMVTCVQPTYPAVNVLRKGDVIMKVDGIRVANDGSIPFRAGERVALKYYMSQLFPEDKTEVELLRDDSVMSVTVPLSVSDVLCPVHFGGRAPSYFVLGGLVFTVMSAPYLEV---------------------------------------------------------------------------------------------LAHEVNVGYEGFSNMQLLSFNGERVKSLRHLVRLADANRQEFLRFELFRDRLIVLEAAGVPDATTQICKDNSIPSPRSSDLV 457
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A0A835ZA79_9STRA (Trypsin-like cysteine/serine peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA79_9STRA) HSP 1 Score: 239 bits (610), Expect = 1.690e-67 Identity = 137/314 (43.63%), Postives = 178/314 (56.69%), Query Frame = 1
Query: 1 LGVIHQRLESPALRQSLKM--SSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDG-NTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANL 933
LG Q LESP LR SL+M ++ TGVLV+ ++ APA LR GDV++ VDGI VANDGS+PFR GERV+LRYY SQLF GD V+V LLRD VT L V LCP+HF G PP+Y ++GGLVFTV+S PYL ++ +S A L HL++LA G++ DEE+VIL QVLAH N GY G++N+ LL FNG V+SL+HL LVD ++RFD +P++++V+DAA + T ++C DN+IPA RS L
Sbjct: 214 LGAGLQFLESPTLRASLRMDDATGMTGVLVSDVDATAPAAAVLRPGDVILSVDGIQVANDGSVPFREGERVALRYYFSQLFRGDAVSVTLLRDGAAATVTAPLCVPGHLCPIHFDGAPPAYAVVGGLVFTVLSEPYLREALEAHRSAFA---------------------------------------------------------LPHLVALAHFGKRARADEEVVILTQVLAHPANLGYEGMENLHLLKFNGEPVSSLRHLCALVDACGAAGYMRFDFYPDRVVVMDAAQLSRCTAEVCEDNAIPASRSKAL 470
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A0A1D6NRH4_MAIZE (Protease Do-like 9 n=3 Tax=Zea mays TaxID=4577 RepID=A0A1D6NRH4_MAIZE) HSP 1 Score: 179 bits (454), Expect = 5.530e-48 Identity = 105/304 (34.54%), Postives = 158/304 (51.97%), Query Frame = 1
Query: 22 LESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANL 933
+E+P LR+++ M + Q GV V +EP AP L+ D+V+ DGI++ANDG++PFR GER+ Y +SQ + G+K V++L + + + L +++ L P H GRPPSY+I+ G VF V+S PYL S +A C G D + LL H Q+ DE++V+++QVL ++N GY + N+Q+LAFNG VT+LKHLA +V+ E FL+FDL +Q++VL+ AAT I + IP+ S +L
Sbjct: 1 MENPDLRKAMGMKANQKGVRVRRVEPTAPETGCLQPSDIVLSFDGIDIANDGTVPFRRGERIGFSYLVSQKYTGEKARVKVLPNSNVHEFNIKLAINKRLIPAHIKGRPPSYYIVAGFVFMVVSVPYLR------------------------------------SESAICQYG----------------KDYEYDAPVKLLDKHLHAMAQSSDEQLVVVSQVLVADINIGYEDIVNIQVLAFNGTPVTNLKHLATMVEECNEAFLKFDLDHDQVVVLETKTAKAATQDIVTTHCIPSAVSEDL 252
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: K3XVZ6_SETIT (Uncharacterized protein n=15 Tax=Panicoideae TaxID=147369 RepID=K3XVZ6_SETIT) HSP 1 Score: 186 bits (472), Expect = 4.390e-47 Identity = 109/311 (35.05%), Postives = 161/311 (51.77%), Query Frame = 1
Query: 1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANL 933
LG+ Q++E+P LR+++ M S+Q GV V +EP AP L D+++ DGI++ANDG++PFRHGER+ Y +SQ + G+K V+LLR+ + + L + L P H GRPPSY+I+ G VFTV+S PYL R +Y D + LL H Q+ DE++V+++QVL ++N GY + N+Q+LAFNG V +LKHLA +V+ E FL+FDL +Q++VL+ AAT I + IP+ S +L
Sbjct: 349 LGIEWQKMENPDLRKAMGMKSDQKGVRVRRVEPTAPESGCLHPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGEKARVKLLRNSKIHEFNIKLATHKRLIPAHIKGRPPSYYIVAGFVFTVVSVPYL-------------------------------------------------RSEYGK--------DYEYDAPVKLLDKHSHAMAQSPDEQLVVVSQVLVSDINIGYEDIVNIQVLAFNGTPVKNLKHLATMVEECNEAFLKFDLDYDQLVVLETKTAKAATQDILTTHCIPSAMSEDL 602
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A0A1Y1IJZ9_KLENI (HrtA/DegP protease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJZ9_KLENI) HSP 1 Score: 187 bits (474), Expect = 4.620e-47 Identity = 111/312 (35.58%), Postives = 166/312 (53.21%), Query Frame = 1
Query: 1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANLL 936
LG+ QR+ESPALRQSL + ++Q GVL+ +EP + A + L++GDV++ DGI +ANDG++PFR GER+S Y +SQ + + + + R + V V L + + L PVH G+ PSYFI+ GLVFT + PYLE TP ++ L +L HG ++ DE++V+L+QVLAH+ N GY L N ++ NGV + ++K LA LV+ +PFL+FDL +++VL+ A AT Q+ D+ IP+ RSA+L+
Sbjct: 380 LGIAWQRMESPALRQSLGLRNDQKGVLIRRLEPTSFAYNVLKEGDVILSFDGIPIANDGTVPFRSGERISFGYLVSQKYTSETATLRVSRQGEEVDVDVRLRIPKRLVPVHIFGKNPSYFIIAGLVFTPVCQPYLESEYGSDYDY-----------------------------------------------DTPVKL------LDRML----HGMARSDDEQVVVLSQVLAHDENIGYEDLSNRVVIRLNGVEIRNIKQLAELVESCQDPFLKFDLEYNEMLVLENAAARRATAQVLQDHCIPSARSADLV 634
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A0A2K1K6G7_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K6G7_PHYPA) HSP 1 Score: 185 bits (469), Expect = 1.390e-46 Identity = 110/318 (34.59%), Postives = 168/318 (52.83%), Query Frame = 1
Query: 1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANLLPPKAAP 954
+GV+ Q+LE+PALR LKM +Q GVLV +EP +PA +++GDV++ D I VAN+G++PFR GER+S + +SQ F GD ++LRD ++ + +L L PVH G+ PSY I+ GLVFT + NPYLE S GQ D + +L ++HG + DE++V+++QVLA+++N GY + N + FNGV++ +L+HLA L+D T+ F+RF+L ++VL+ + T +I DN +P RS +L+ A P
Sbjct: 344 MGVLWQKLENPALRAFLKMKPDQKGVLVRRVEPTSPAFQAIKEGDVLLSFDNIPVANEGTVPFRAGERISFGFLISQKFSGDTAKCKMLRDGEVIEIETTLKAPVHLVPVHIEGKLPSYLIVAGLVFTPVCNPYLE-SEYGQ--------------------------------------------------------DFEYDAPVKILEKSRHGMAEFDDEQLVVVSQVLANDVNIGYEEIANTLVKTFNGVKIRNLRHLADLIDTCTDDFMRFELDYCSLVVLETKVARSVTPKILEDNCVPTDRSQDLITSAALP 604
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A0A6P6T9Q9_COFAR (protease Do-like 9 n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6T9Q9_COFAR) HSP 1 Score: 184 bits (466), Expect = 2.150e-46 Identity = 109/311 (35.05%), Postives = 158/311 (50.80%), Query Frame = 1
Query: 1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANL 933
LGV Q++E+P LR ++ M+S Q GV + IEP AP L+ DV++ DG+N+ANDG++PFRHGER+ Y +SQ + GD AV++LR+ + ++ L + L P H +PPSY+I+GG VFT +S PYL + A V LL HG Q+ DE++V+++QVL ++N GY + N Q++AFNG V +LK LA +V+ E FL+FDL +QI+VL AAT I + IP+P S +L
Sbjct: 330 LGVEWQKMENPDLRMAMGMTSNQKGVRIRRIEPTAPESHVLKPSDVIISFDGVNIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRNSVMFEFSIKLATHKRLIPAHIREKPPSYYIVGGFVFTAVSVPYLRSEYGKEYEFEAPVK---------------------------------------------------------LLDKHLHGMAQSVDEQVVLVSQVLVADINIGYEEIVNTQVMAFNGKPVKNLKILAAMVEACDEEFLKFDLEYDQIVVLQTKSAKAATADILAMHCIPSPMSDDL 583
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A9T734_PHYPA (Predicted protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9T734_PHYPA) HSP 1 Score: 181 bits (458), Expect = 3.170e-46 Identity = 108/311 (34.73%), Postives = 159/311 (51.13%), Query Frame = 1
Query: 1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANL 933
LG+ Q++E+P LR++L M S Q GV + +EP APA LR D++M DGI++ANDG++PFRHGER+ Y +S+ + G+ V++LRD + L + L P H G+PPSY+IL G+VF +S PYL A V + L LL H Q++DE++V+++QVL ++N GY + N Q++AFN V +LKHLA LV+ T+PFLRF L +QI++L+ AAT +I + IP+ S +L
Sbjct: 210 LGIEWQKMENPDLRKALGMKSTQKGVRIRRVEPTAPAFAQLRASDILMSFDGIDIANDGTVPFRHGERIGFSYLVSKKYSGECAKVKILRDGKSKEFDIDLVNHKRLVPAHIKGKPPSYYILAGIVFAAISVPYLRSEYGKDYDYDAPVKL-----------------------------------------------------LDKLL----HSMSQSEDEQLVVVSQVLVADINIGYEDIVNTQVVAFNDTPVRNLKHLANLVEKCTDPFLRFGLDYQQIVILETQTAKAATPEILATHCIPSAMSHDL 463
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Match: A0A1Y1I8A1_KLENI (HrtA/DegP protease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I8A1_KLENI) HSP 1 Score: 184 bits (466), Expect = 5.280e-46 Identity = 111/311 (35.69%), Postives = 162/311 (52.09%), Query Frame = 1
Query: 1 LGVIHQRLESPALRQSLKMSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERVSLRYYMSQLFPGDKVAVELLRDRGLMFVTVSLFVSEFLCPVHFGGRPPSYFILGGLVFTVMSNPYLEVSVSGQQSLLASVAVSRVQNNMWHGWFHVLLLAGSFSSNAYCCVGFVSRDQYHSTSRTPAEMDEQAGGLSHLLSLAQHGRKQNKDEEIVILAQVLAHELNEGYGGLKNMQLLAFNGVRVTSLKHLARLVDGNTEPFLRFDLFPEQIIVLDAAGVPAATDQICGDNSIPAPRSANL 933
LG+ Q++E+P LR++L M+ Q GV V +EP AP+ + L+ D+++ DG++VANDG++PFR GER++ Y +SQ + G+ + +LR+ V V L L PVH GG+PPSY+I+ GLVFT +S PYL A + N E D LL H D+++V+++QVL ++N GY + N Q+L FNG RV +LKHLA +V+ T PFLRFDL +Q++VL+ A AAT I + IP+ RS +L
Sbjct: 392 LGIEWQKMENPQLRKALGMTDHQKGVRVRRVEPTAPSAEQLQASDILLSFDGVDVANDGTVPFRRGERIAFSYLVSQRYTGETARLTILREGREHQVQVKLGSHNRLVPVHTGGKPPSYYIVAGLVFTPVSVPYL---------------------------------ASEYGKNF--------------------EFDAPV----KLLDKMMHVMADAPDQQVVVVSQVLVADINIGYEEIVNTQVLRFNGTRVNNLKHLAAMVEAATAPFLRFDLEYDQVMVLETAAAKAATPSILKTHRIPSARSEDL 645 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17270.4465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17270.4465.1 >prot_H-elongata_contig17270.4465.1 ID=prot_H-elongata_contig17270.4465.1|Name=mRNA_H-elongata_contig17270.4465.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=435bp MSSEQTGVLVTSIEPMAPAIDTLRKGDVVMKVDGINVANDGSIPFRHGERback to top mRNA from alignment at H-elongata_contig17270:1..3203+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17270.4465.1 ID=mRNA_H-elongata_contig17270.4465.1|Name=mRNA_H-elongata_contig17270.4465.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3203bp|location=Sequence derived from alignment at H-elongata_contig17270:1..3203+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17270:1..3203+ >mRNA_H-elongata_contig17270.4465.1 ID=mRNA_H-elongata_contig17270.4465.1|Name=mRNA_H-elongata_contig17270.4465.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2610bp|location=Sequence derived from alignment at H-elongata_contig17270:1..3203+ (Himanthalia elongata Himel1 dioecious)back to top |