mRNA_H-elongata_contig172577.4462.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172577.4462.1
Unique NamemRNA_H-elongata_contig172577.4462.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig172577.4462.1 vs. uniprot
Match: A0A6H5L9D6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9D6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.090e-12
Identity = 36/92 (39.13%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:   19 MRRRRIMFAGFVVRIDDTRLLKCVMFGEIMGGTGCMGGPKKEWMGCILEDIKTFDIS----AYQWMIAALDKGGWRKMAEQGAEHFMKKFIG 282
            +R+RR+ FAGFV+R++D RL K ++ G + GGTG  GG + +W+  + ED+  F +     A +W  +A D   W    E GA  FM+K+ G
Sbjct:  638 VRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEAGKWKDSAKDPKVWYSKVEDGAAWFMRKWHG 729
[Close]
BLAST of mRNA_H-elongata_contig172577.4462.1 vs. uniprot
Match: A0A6H5L376_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L376_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.070e-11
Identity = 34/90 (37.78%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:   19 MRRRRIMFAGFVVRIDDTRLLKCVMFGEIMGGTGCMGGPKKEWMGCILEDIKTFDIS----AYQWMIAALDKGGWRKMAEQGAEHFMKKF 276
            +R+RR+ FAGFV+R +D RL K ++ G + GG G  GG + +W+  + ED+ TF++       +W  +A D   W    E GA   MKK+
Sbjct:  210 VRKRRLCFAGFVMRTEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVTFNVGDEKEGVKWKASAKDPEVWYNKVEDGAAWLMKKW 299
[Close]
BLAST of mRNA_H-elongata_contig172577.4462.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.800e-11
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:   19 MRRRRIMFAGFVVRIDDTRLLKCVMFGEIMGGTGCMGGPKKEWMGCILEDIKTFDIS----AYQWMIAALDKGGWRKMAEQGAEHFMKKF 276
            +R+RR+ FAGFV+R++D+RL K ++ G + GG G  GG + +W+  + ED+  F++S      +W  +A D   W    E GA  FM+K+
Sbjct:  702 VRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMSDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKW 791
[Close]
BLAST of mRNA_H-elongata_contig172577.4462.1 vs. uniprot
Match: A0A6H5KLR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR9_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.360e-11
Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:   19 MRRRRIMFAGFVVRIDDTRLLKCVMFGEIMGGTGCMGGPKKEWMGCILEDIKTFDIS----AYQWMIAALDKGGWRKMAEQGAEHFMKKF 276
            MR+RR+ FAGFV+R++D RL K ++ G + GG G  GG + +W+  + ED+  F++       +W  +A D   W    E GA  FM+K+
Sbjct:  349 MRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKW 438
[Close]
BLAST of mRNA_H-elongata_contig172577.4462.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.390e-11
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:   19 MRRRRIMFAGFVVRIDDTRLLKCVMFGEIMGGTGCMGGPKKEWMGCILEDIKTFDISAYQ----WMIAALDKGGWRKMAEQGAEHFMKKF 276
            +R+RR+ FAGFV+R++D RL K ++ G + GGTG  GG + +W+  + ED+  F +   +    W  +A D+  W    E GA  FM+K+
Sbjct:  169 VRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKW 258
[Close]
BLAST of mRNA_H-elongata_contig172577.4462.1 vs. uniprot
Match: A0A6H5L020_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L020_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.450e-11
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:   19 MRRRRIMFAGFVVRIDDTRLLKCVMFGEIMGGTGCMGGPKKEWMGCILEDIKTFDIS----AYQWMIAALDKGGWRKMAEQGAEHFMKKF 276
            +R+RR+ F GFVVR++D+RL K ++ G + GG G  GG + +W+  + ED+  F+I     A +W  +A D   W    E GA  FM+K+
Sbjct:  676 VRKRRLCFVGFVVRMEDSRLPKRMLSGAMAGGVGYRGGQESDWVSRLGEDLVAFNIGDEKGAGKWKESAKDPEVWYNNVEDGAAWFMRKW 765
[Close]
BLAST of mRNA_H-elongata_contig172577.4462.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.670e-11
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:   19 MRRRRIMFAGFVVRIDDTRLLKCVMFGEIMGGTGCMGGPKKEWMGCILEDIKTFDISAYQ----WMIAALDKGGWRKMAEQGAEHFMKKF 276
            +R+RR+ FAGFV+R++D RL K ++ G + GGTG  GG + +W+  + ED+  F +   +    W  +A D+  W    E GA  FM+K+
Sbjct:  199 VRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKW 288
[Close]
BLAST of mRNA_H-elongata_contig172577.4462.1 vs. uniprot
Match: A0A6H5K809_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K809_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.090e-11
Identity = 34/90 (37.78%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:   19 MRRRRIMFAGFVVRIDDTRLLKCVMFGEIMGGTGCMGGPKKEWMGCILEDIKTF----DISAYQWMIAALDKGGWRKMAEQGAEHFMKKF 276
            +R+RR+ FAGFV R++ +RLLK ++ G + GG G  GG + +W+  + ED+  F    D    +W  +A D   W    E GA  FM+K+
Sbjct:  115 VRKRRLCFAGFVTRMEHSRLLKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDDKEGGKWKESAKDPEVWYNKVEDGAAWFMRKW 204
[Close]
BLAST of mRNA_H-elongata_contig172577.4462.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.140e-11
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:   19 MRRRRIMFAGFVVRIDDTRLLKCVMFGEIMGGTGCMGGPKKEWMGCILEDIKTFDISAYQ----WMIAALDKGGWRKMAEQGAEHFMKKF 276
            +R+RR+ FAGFV+R++D RL K ++ G + GGTG  GG + +W+  + ED+  F +   +    W  +A D+  W    E GA  FM+K+
Sbjct:  289 VRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKW 378
[Close]
BLAST of mRNA_H-elongata_contig172577.4462.1 vs. uniprot
Match: A0A6H5LG55_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG55_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.170e-11
Identity = 33/90 (36.67%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:   19 MRRRRIMFAGFVVRIDDTRLLKCVMFGEIMGGTGCMGGPKKEWMGCILEDIKTF----DISAYQWMIAALDKGGWRKMAEQGAEHFMKKF 276
            +R+RR+ FAGFV+R++D+RL K ++ G + GG G  GG + +W+  + ED+  F    ++   +W  +A D   W    E+GA  FM+K+
Sbjct:  308 VRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFSMGDEMEGDKWKESAKDPEVWYNKVEKGAAWFMRKW 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172577.4462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9D6_9PHAE7.090e-1239.13Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L376_9PHAE1.070e-1137.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE1.800e-1137.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLR9_9PHAE2.360e-1137.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSH7_9PHAE2.390e-1137.78Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L020_9PHAE2.450e-1138.89Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KB07_9PHAE2.670e-1137.78Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K809_9PHAE3.090e-1137.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5T8_9PHAE3.140e-1137.78Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LG55_9PHAE3.170e-1136.67Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172577contigH-elongata_contig172577:896..1198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.1
Seed ortholog evalue6.6e-07
Seed eggNOG ortholog7739.XP_002592449.1
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size285
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930004.8216507-CDS-H-elongata_contig172577:895..11801622930004.8216507-CDS-H-elongata_contig172577:895..1180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172577 896..1180 -
1691679242.3789773-CDS-H-elongata_contig172577:895..11801691679242.3789773-CDS-H-elongata_contig172577:895..1180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172577 896..1180 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930004.8530664-UTR-H-elongata_contig172577:1180..11981622930004.8530664-UTR-H-elongata_contig172577:1180..1198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172577 1181..1198 -
1691679242.3885806-UTR-H-elongata_contig172577:1180..11981691679242.3885806-UTR-H-elongata_contig172577:1180..1198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172577 1181..1198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172577.4462.1prot_H-elongata_contig172577.4462.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172577 896..1180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172577.4462.1

>prot_H-elongata_contig172577.4462.1 ID=prot_H-elongata_contig172577.4462.1|Name=mRNA_H-elongata_contig172577.4462.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MRRRRIMFAGFVVRIDDTRLLKCVMFGEIMGGTGCMGGPKKEWMGCILED
IKTFDISAYQWMIAALDKGGWRKMAEQGAEHFMKKFIGLDYGMH*
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mRNA from alignment at H-elongata_contig172577:896..1198-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172577.4462.1 ID=mRNA_H-elongata_contig172577.4462.1|Name=mRNA_H-elongata_contig172577.4462.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig172577:896..1198- (Himanthalia elongata Himel1 dioecious)
ATATCTCGCAGGTATATCATGCGCAGGAGGCGGATCATGTTCGCGGGATT
CGTGGTGCGCATAGACGACACGAGACTGCTGAAGTGCGTGATGTTCGGTG
AAATCATGGGGGGCACGGGTTGCATGGGGGGACCGAAAAAAGAGTGGATG
GGGTGTATTCTGGAAGACATCAAAACTTTCGATATCAGCGCCTACCAGTG
GATGATTGCAGCCCTGGACAAAGGGGGATGGCGCAAGATGGCGGAACAAG
GGGCGGAACATTTCATGAAGAAATTTATAGGACTGGACTACGGCATGCAC
TAG
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Coding sequence (CDS) from alignment at H-elongata_contig172577:896..1198-

>mRNA_H-elongata_contig172577.4462.1 ID=mRNA_H-elongata_contig172577.4462.1|Name=mRNA_H-elongata_contig172577.4462.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig172577:896..1198- (Himanthalia elongata Himel1 dioecious)
ATGCGCAGGAGGCGGATCATGTTCGCGGGATTCGTGGTGCGCATAGACGA
CACGAGACTGCTGAAGTGCGTGATGTTCGGTGAAATCATGGGGGGCACGG
GTTGCATGGGGGGACCGAAAAAAGAGTGGATGGGGTGTATTCTGGAAGAC
ATCAAAACTTTCGATATCAGCGCCTACCAGTGGATGATTGCAGCCCTGGA
CAAAGGGGGATGGCGCAAGATGGCGGAACAAGGGGCGGAACATTTCATGA
AGAAATTTATAGGACTGGACTACGGCATGCACTAGATGCGCAGGAGGCGG
ATCATGTTCGCGGGATTCGTGGTGCGCATAGACGACACGAGACTGCTGAA
GTGCGTGATGTTCGGTGAAATCATGGGGGGCACGGGTTGCATGGGGGGAC
CGAAAAAAGAGTGGATGGGGTGTATTCTGGAAGACATCAAAACTTTCGAT
ATCAGCGCCTACCAGTGGATGATTGCAGCCCTGGACAAAGGGGGATGGCG
CAAGATGGCGGAACAAGGGGCGGAACATTTCATGAAGAAATTTATAGGAC
TGGACTACGGCATGCACTAG
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