mRNA_H-elongata_contig172471.4460.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172471.4460.1
Unique NamemRNA_H-elongata_contig172471.4460.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig172471.4460.1 vs. uniprot
Match: A0A540NPQ2_MALBA (gag_pre-integrs domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NPQ2_MALBA)

HSP 1 Score: 57.0 bits (136), Expect = 1.730e-6
Identity = 50/172 (29.07%), Postives = 77/172 (44.77%), Query Frame = 1 
Query:    1 WVNDSGATEHMTQDPAGLEDYTPEPAGDQVESAGGTLLPVAGYGHFRLLVDLGNGNFTDSTRQLTLKHVAHVPNLGQHNMLSTKRLTQLFDARMRVYPAAALIRPRRGGMPLFFRPLRPENGLLEIKVRRHVAARSRQPKPPTATALAATQRGPRNIMKFHKVLGHPAEQIM 516
            W+ DSGA+ HMT   A L++       +QV    G  LP+         +  G+ +   ST    LKHV HVP L Q N++S  +        M +YP    ++    G  LF  P+  ++G          A  S+        AL A  + P+++  +H+ LGHP+ +IM
Sbjct:   25 WIVDSGASSHMTNSYANLQNPEAYTGPEQVYIGDGKGLPI---------LHSGSSSLHTSTNSFALKHVLHVPALKQ-NLISANQFLLDNSCFMHLYPFHFTVKDLSSGRMLFKGPV--QHGFYPFHSSFSPANSSQ--------ALTAYVKAPQHL--WHQRLGHPSVKIM 174
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BLAST of mRNA_H-elongata_contig172471.4460.1 vs. uniprot
Match: A0A2P6P2V5_ROSCH (Uncharacterized protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P2V5_ROSCH)

HSP 1 Score: 54.3 bits (129), Expect = 2.940e-6
Identity = 35/98 (35.71%), Postives = 51/98 (52.04%), Query Frame = 1 
Query:    1 WVNDSGATEHMTQDPAGLEDYTPEPAGDQVESAGGTLLPVAGYGHFRLLVDLGNGNFTDSTRQLTLKHVAHVPNLGQHNMLSTKRLTQLFDARMRVYP 294
            W+ DSGAT+HMT +P+ +   TP      V +A G   P+ G G   L            T+ +TL  V  VP+L  HN+LS K++T+ F   + +YP
Sbjct:   23 WIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQITKQFYCCVILYP 106
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BLAST of mRNA_H-elongata_contig172471.4460.1 vs. uniprot
Match: A0A2P6S473_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S473_ROSCH)

HSP 1 Score: 54.3 bits (129), Expect = 2.390e-5
Identity = 35/98 (35.71%), Postives = 51/98 (52.04%), Query Frame = 1 
Query:    1 WVNDSGATEHMTQDPAGLEDYTPEPAGDQVESAGGTLLPVAGYGHFRLLVDLGNGNFTDSTRQLTLKHVAHVPNLGQHNMLSTKRLTQLFDARMRVYP 294
            W+ DSGAT+HMT +P+ +   TP      V +A G   P+ G G   L            T+ +TL  V  VP+L  HN+LS K++T+ F   + +YP
Sbjct:  238 WIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQITKQFYCCVILYP 321
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172471.4460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A540NPQ2_MALBA1.730e-629.07gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A2P6P2V5_ROSCH2.940e-635.71Uncharacterized protein n=1 Tax=Rosa chinensis Tax... [more]
A0A2P6S473_ROSCH2.390e-535.71Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172471contigH-elongata_contig172471:769..1299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size531
Cds size501
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930004.2164478-CDS-H-elongata_contig172471:768..12691622930004.2164478-CDS-H-elongata_contig172471:768..1269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172471 769..1269 -
1691679242.0907314-CDS-H-elongata_contig172471:768..12691691679242.0907314-CDS-H-elongata_contig172471:768..1269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172471 769..1269 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930004.2331507-UTR-H-elongata_contig172471:1269..12991622930004.2331507-UTR-H-elongata_contig172471:1269..1299Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172471 1270..1299 -
1691679242.0981781-UTR-H-elongata_contig172471:1269..12991691679242.0981781-UTR-H-elongata_contig172471:1269..1299Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172471 1270..1299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172471.4460.1prot_H-elongata_contig172471.4460.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172471 769..1269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172471.4460.1

>prot_H-elongata_contig172471.4460.1 ID=prot_H-elongata_contig172471.4460.1|Name=mRNA_H-elongata_contig172471.4460.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
MTQDPAGLEDYTPEPAGDQVESAGGTLLPVAGYGHFRLLVDLGNGNFTDS
TRQLTLKHVAHVPNLGQHNMLSTKRLTQLFDARMRVYPAAALIRPRRGGM
PLFFRPLRPENGLLEIKVRRHVAARSRQPKPPTATALAATQRGPRNIMKF
HKVLGHPAEQIMRNTAR
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mRNA from alignment at H-elongata_contig172471:769..1299-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172471.4460.1 ID=mRNA_H-elongata_contig172471.4460.1|Name=mRNA_H-elongata_contig172471.4460.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=531bp|location=Sequence derived from alignment at H-elongata_contig172471:769..1299- (Himanthalia elongata Himel1 dioecious)
TGGGTGAACGATAGCGGTGCGACAGAGCACATGACACAGGACCCGGCGGG
TCTAGAGGATTACACGCCGGAACCCGCGGGAGATCAAGTGGAGAGCGCCG
GCGGTACCCTCCTTCCGGTGGCGGGATATGGACATTTCCGCCTCCTGGTG
GACCTAGGCAACGGCAACTTCACCGACTCGACGCGCCAGCTCACGCTAAA
GCACGTCGCACATGTGCCGAATCTTGGACAGCATAATATGCTCTCTACGA
AACGGCTGACGCAGTTGTTCGACGCGCGGATGCGCGTCTACCCAGCGGCT
GCATTGATTCGCCCCCGGCGAGGAGGCATGCCACTCTTTTTCCGCCCACT
TCGACCTGAAAACGGACTTTTGGAGATCAAGGTGCGCCGCCACGTCGCTG
CGAGGAGCCGCCAACCCAAACCCCCAACAGCAACAGCGCTCGCGGCGACG
CAGCGCGGTCCGCGGAATATCATGAAGTTCCACAAGGTGCTGGGGCACCC
GGCAGAGCAGATCATGCGCAACACGGCCCGT
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Coding sequence (CDS) from alignment at H-elongata_contig172471:769..1299-

>mRNA_H-elongata_contig172471.4460.1 ID=mRNA_H-elongata_contig172471.4460.1|Name=mRNA_H-elongata_contig172471.4460.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig172471:769..1299- (Himanthalia elongata Himel1 dioecious)
ATGACACAGGACCCGGCGGGTCTAGAGGATTACACGCCGGAACCCGCGGG
AGATCAAGTGGAGAGCGCCGGCGGTACCCTCCTTCCGGTGGCGGGATATG
GACATTTCCGCCTCCTGGTGGACCTAGGCAACGGCAACTTCACCGACTCG
ACGCGCCAGCTCACGCTAAAGCACGTCGCACATGTGCCGAATCTTGGACA
GCATAATATGCTCTCTACGAAACGGCTGACGCAGTTGTTCGACGCGCGGA
TGCGCGTCTACCCAGCGGCTGCATTGATTCGCCCCCGGCGAGGAGGCATG
CCACTCTTTTTCCGCCCACTTCGACCTGAAAACGGACTTTTGGAGATCAA
GGTGCGCCGCCACGTCGCTGCGAGGAGCCGCCAACCCAAACCCCCAACAG
CAACAGCGCTCGCGGCGACGCAGCGCGGTCCGCGGAATATCATGAAGTTC
CACAAGGTGCTGGGGCACCCGGCAGAGCAGATCATGCGCAACACGGCCCG
TATGACACAGGACCCGGCGGGTCTAGAGGATTACACGCCGGAACCCGCGG
GAGATCAAGTGGAGAGCGCCGGCGGTACCCTCCTTCCGGTGGCGGGATAT
GGACATTTCCGCCTCCTGGTGGACCTAGGCAACGGCAACTTCACCGACTC
GACGCGCCAGCTCACGCTAAAGCACGTCGCACATGTGCCGAATCTTGGAC
AGCATAATATGCTCTCTACGAAACGGCTGACGCAGTTGTTCGACGCGCGG
ATGCGCGTCTACCCAGCGGCTGCATTGATTCGCCCCCGGCGAGGAGGCAT
GCCACTCTTTTTCCGCCCACTTCGACCTGAAAACGGACTTTTGGAGATCA
AGGTGCGCCGCCACGTCGCTGCGAGGAGCCGCCAACCCAAACCCCCAACA
GCAACAGCGCTCGCGGCGACGCAGCGCGGTCCGCGGAATATCATGAAGTT
CCACAAGGTGCTGGGGCACCCGGCAGAGCAGATCATGCGCAACACGGCCC
GT
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