mRNA_H-elongata_contig172438.4459.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR) HSP 1 Score: 176 bits (447), Expect = 1.340e-47 Identity = 114/350 (32.57%), Postives = 192/350 (54.86%), Query Frame = 1
Query: 1 EPRNRRQAMESPEWDDWRKAKETEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFP--GAVGQLNKAIYGLQGKA---------------------DPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRK--IPATSGVPTLSKTDEPRN-PEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 972
+P++ +AM+S + D W +A E+EM M N V+ V K +G K ++K+K+G DG VE Y+ RLVA+G+ EG+ Y E +SP SIR+L A A D E+ D + FL ++ EE+Y E + V +L ++IYGL+ + +PCV++K+ G + + +V++VDDIL D ++ L ++ +KD+G+ Y +G I R+R R L + Q +Y+++++++++ EK ++ +P GV +LS+ + P+ E+E M + PY AVGA+M+T T TRPD+A A+ +R+ + G H K I++Y
Sbjct: 92 DPKSYEEAMQSLDHDKWIRAMESEMESMKINKVWTLVEASKGIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKI-SGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRY-QANPGEEHWKVVKTILKY 438
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A438JH99_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JH99_VITVI) HSP 1 Score: 177 bits (450), Expect = 3.390e-46 Identity = 114/350 (32.57%), Postives = 191/350 (54.57%), Query Frame = 1
Query: 1 EPRNRRQAMESPEWDDWRKAKETEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFP--GAVGQLNKAIYGLQGKA---------------------DPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRK--IPATSGVPTLSKTDEPRNPE-KEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 972
+P+N +AM+ + + W++A E+E+ M N V+ V KD +G K ++K+K+G DG VE Y+ RLVA+G+ EG+ Y E +SP SIR+L A A D E+ D + FL ++ E++Y E Y V +L ++IYGL+ + +PCV+++ G + +V++VDDIL D + L ++ +KD+G+ Y +G I R+R R L + Q +Y+++++++++ E ++ +P +GV TLS+ D P+ PE +E M + PY AVGA+M+T T TRPD+A A+ +R+ + G H K I++Y
Sbjct: 703 DPKNYEEAMQILDRNKWQEAMESEIESMKINKVWTLVEASKDIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEDVYMTQPEGYTSMSDHNKVCKLRRSIYGLKQASRSWNIHFNKTIEKFDFVKCEEEPCVYKRF-SGSTIIFLVLYVDDILLIGNDIPAMQGTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRY-QANPGEEHWKVVKTILKY 1049
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: H3GAU1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GAU1_PHYRM) HSP 1 Score: 167 bits (423), Expect = 2.000e-45 Identity = 106/327 (32.42%), Postives = 174/327 (53.21%), Query Frame = 1
Query: 25 MESPEWDDWRKAKETEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKY--QKFPGAVGQLNKAIYGLQ---------------------GKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKI--PATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKN 930
M S D W A ++EM+ + ++ ++ V P+DK +G K + + K +GNV K++ RLVA+G+ G+ +T+ ++P SI AT A +D E N D + FL D+ EELY + + + Q P L +A+YG + ADPCV+ + E +VV+ +VD ++ +K K I+ L +K +K++G+++Y +G I RNR+ + + ++Q Y++ + EKF +K + + PA + T+ E+ + K+PYRE VGALM+ AT TRPDIA AV VA+FC++ N
Sbjct: 1 MRSKYKDQWLDAMKSEMKSLKDHNTWELVKMPRDKKAIGCKWVFRIKRDPNGNVVKFKARLVAKGYTQRPGIDFTDTFAPVARKESINASLATAAEEDMEAENVDVDTAFLYGDVEEELYMDQPDGFEDQSNPAMKCLLKQALYGTKQAARQWNNKLNKYLEDQGFRRSDADPCVYVRRSTDEYSIVVI-YVDALMLFSKTKEHIESIKVTLKKKFSIKELGELKYCLGIEIDRNREDKTILMNQRAYIKRLAEKFGVDKCKAVHTPADCNSKLVKMTE-----EEAFVAKYPYRELVGALMYLATCTRPDIAQAVGEVAKFCKRYN 321
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE) HSP 1 Score: 171 bits (433), Expect = 5.890e-45 Identity = 117/335 (34.93%), Postives = 188/335 (56.12%), Query Frame = 1
Query: 1 EPRNRRQAMESPEWDDWRKAKETEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKY-QKFPGAVGQLNKAIYGLQGKADPCVFRKVV------DGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPT---LSKTDEPRNPEK-EEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 972
EP RQA+ SP + W++A EM + N + V P + +G+K +++ K DG++E+++ RLVA+GF G Y+E ++ T ++R + A A +D LR+ D F+ +DI+ E+Y E + Q P V +L+K++YGL K P ++ + + + +V+V V VDDI +K + +D F A+L + KL+D+G Y +G ITRNR RKL + Q Y+ + +E+F + PAT+ + LSK+ P+ P++ EEM + PY AVG+L++ ATMTRPDIA +ARF G H KA ++++Y
Sbjct: 103 EPVTYRQAITSPNAEQWQEAMIEEMTAHLSNGTWNLVELPPGQKAIGSKWVYRIKHKADGSIERFKARLVAKGFSQRLGFDYSETFASTMRQNTLRTVLALAAVEDLHLRSIDISHAFINSDIDTEIYMTQPEGFRQGGPRIVCRLDKSLYGL--KQAPRLWDEKLGIYIYQNDNVKVIVPVFVDDITLASKSEDMLDEFVAKLSKHFKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCK--PATTPMTPNLILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARF-NSNPGMDHWKAVKHVLRY 432
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: H3G9E3_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9E3_PHYRM) HSP 1 Score: 169 bits (427), Expect = 7.780e-45 Identity = 107/327 (32.72%), Postives = 177/327 (54.13%), Query Frame = 1
Query: 67 TEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKY--QKFPGAVGQLNKAIYGLQ---------------------GKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKI--PATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 972
+EM+ + ++ ++ V P+DK +G K + + K +GNV K++ RLVA+G+ G+ +T+ ++P SI AT A +D E N D + FL D+ EELY + + + Q P L +A+YG + ADPCV+ + E +VV+ +VDD++ +K K I+ L ++ +K++G+++Y +G I RNR+ + + ++Q Y++ + EKF +K + + PA + T+ E+ + K+PYRE VGALM+ AT TRPDIA AV VA+FCE+ N +H AA I++Y
Sbjct: 3 SEMKSLEDHNTWELVKMPRDKKAIGFKWVFRIKRDPNGNVVKFKARLVAKGYTQRPGIDFTDTFAPVAREESINASLATAAEEDMEAENVDVDTAFLYGDVEEELYMDQPDGFEDQSNPAMKCLLKQALYGTKQAARQWNSKLNKHLEDQGFRRSDADPCVYVRRSTDEYSIVVI-YVDDLMLFSKTKEHIESIKVALKKEFSIKELGELKYCLGIEIDRNREDKTILMNQRAYIKRLAEKFGVDKCKAVHTPADCNSKLVKMTE-----EEAFVAKYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYN-KSHWVAAKRILKY 322
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A1Y1IQX0_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQX0_KLENI) HSP 1 Score: 172 bits (435), Expect = 3.440e-44 Identity = 116/350 (33.14%), Postives = 194/350 (55.43%), Query Frame = 1
Query: 1 EPRNRRQAMESPEWDDWRKAKETEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKF-PGAVGQLNKAIYGLQ---------------------GKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAE--KVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPA--HKKAAMNIMQY 972
EP++ ++A+ + + WR++ + EMR ++EN ++ V +P+ V K ++K K GN+E+++ RLVA+GF +GV + E Y+P ++R L AA+D EL D + FL ++ EE+Y + + Y++ P V +L K IYGL+ ++D +F VVDGE V VVV VDDIL A + + + A L +K ++D+G Y++G +TR+R+AR +K+ Q + ++ +++ E K R P +SG L K +P + K+PY E VG+L++ + TRPDIA AV A+AR+ +GP H +AA+ +++Y
Sbjct: 835 EPQSYQEAVGGEQSEIWRQSMDDEMRSLLENGTWELVPKPEGVKPVPMKWVYKIKQDAAGNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPKTVCRLKKTIYGLRQAPRAWHQRLKAELGEIEFQASESDAALFTGVVDGE-RVWVVVWVDDILIAAAGEKRLAKVKAHLSRKFDVRDLGPAEYFLGMELTRDRRARTVKLTQKKLTKELLGRYELEAAKARSTPLSSGE-KLQKEGDPL-----DTGKYPYSELVGSLLYLSVCTRPDIAQAVGALARYM---SGPTQEHWRAALGVVRY 1174
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A1Y1IVX6_KLENI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IVX6_KLENI) HSP 1 Score: 171 bits (433), Expect = 5.880e-44 Identity = 115/350 (32.86%), Postives = 193/350 (55.14%), Query Frame = 1
Query: 1 EPRNRRQAMESPEWDDWRKAKETEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKF-PGAVGQLNKAIYGLQ---------------------GKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKF--DAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPA--HKKAAMNIMQY 972
EP++ ++A+ + + WR++ + EMR ++EN ++ V +P+ V K ++K K GN+E+++ RLVA+GF +GV + E Y+P ++R L AA+D EL D + FL ++ EE+Y + + Y++ P V +L K IYGL+ ++D +F V+DGE V VVV VDDIL AK + + + A L +K ++D+G Y++G +TR+R+AR +K+ Q + ++ ++ +A K R P +SG L + +P + K+PY E VG+L++ + TRPDIA AV A+AR+ GP H +AA+ + +Y
Sbjct: 560 EPQSYQEAVGGEQSEIWRQSMDDEMRSLLENGTWELVPKPEGVKPVPMKWVYKIKRDAAGNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPETVCRLKKTIYGLRQAPRAWHQKLKTELGEIEFRASESDAALFTGVIDGE-RVWVVVWVDDILIAAKGEQRLAKVKAHLSEKFDVRDLGPAEYFLGMELTRDRRARTIKLTQKKLTKELLGRYGLEAAKARSTPLSSGE-KLQREGDPL-----DTGKYPYSELVGSLLYLSVCTRPDIAQAVGALARYMA---GPTEEHWRAALGVARY 899
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A6H5JJC4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC4_9PHAE) HSP 1 Score: 165 bits (417), Expect = 8.350e-44 Identity = 114/344 (33.14%), Postives = 177/344 (51.45%), Query Frame = 1
Query: 1 EPRNRRQAMESPEWDDWRKAKETEMRGMVENCVYK-QVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNKAIYGLQGKA---------------------DPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIM 966
EP R+A +S W KA G++ + V P V+ + ++K + G EK + RLVA+GF GV Y E +SPT + ASIR+L A T + EL +FD EQ F +++++ E++ ++ + G V +L+K++YGL+ + DPCV R ++ E +V +H DDIL HA + LG K++G+V++++GC +R+R+A ++I Q YV S++E+F+ + I A+ S E EE P+RE VG+LMW A TRPDI++AVRAVAR + +H KAA I+
Sbjct: 14 EPGRYREARQSMHAVIWDKAMSEAFEGLLRAGTFALAVKAPISCNVIDARWVYKWISDETGKTEKAKARLVAKGFEQKHGVDYLETFSPTANAASIRLLVALTCKYNLELLHFDIEQAFFQSELDHEVFMKLPPDCESMSGKVVRLDKSLYGLRQASRTFHRRQVWDLKAIGFEQPLFDPCVLRFIMGDEVMGMVAIHADDIL-HAGTERLAKMVVEALGDSLSTKNLGEVKFFLGCAFSRDREAGTIEISQESYVRSVLERFNIYRTSSISASPAKAYRSVM------EDEEAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPK-TSHWKAAQKIL 349
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY) HSP 1 Score: 169 bits (429), Expect = 2.200e-43 Identity = 113/351 (32.19%), Postives = 187/351 (53.28%), Query Frame = 1
Query: 1 EPRNRRQAMESPEWDDWRKAKETEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGA--VGQLNKAIYGLQGKA---------------------DPCVFRKVVDGEA-EVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKI--PATSGVPTLSKTDEPRNP-EKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 972
EPR+ +AM+SP+W W+KA E EMR + ++ Y V P++ VVG+K + + K +G +E Y+ RLVAQGF + G+ + + ++P ASIR++ A A D ++ D + +L AD+ EE++ + K V L AIYGL+ D CVF D ++ +++ + VDD + + F E+ ++ ++ D+G++ + +G + R+R AR L + Q Y++ ++ +F+ E + + P G LS P P E E+MR PYREA+G+LM+ A TRPDIA AV A+++F + G AH +AA +++Y
Sbjct: 959 EPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVL-WFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNLEDAKPLSTPLEPGA-ILSIRQCPSTPREFEDMRNVPYREAIGSLMYAALGTRPDIAFAVTALSQFMQNP-GRAHWEAAKRVLRY 1306
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 169 bits (428), Expect = 2.880e-43 Identity = 110/334 (32.93%), Postives = 176/334 (52.69%), Query Frame = 1
Query: 43 DDWRKAKETEMRGMVENCVYKQV-ARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNKAIYGL---------------------QGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPA--HKKAAMNIMQY 972
+ W +A E G + + V P+ + V +K K ++G ++ ++ RLVA+GF + V Y SP PS+ASI+++ A K L ++D +Q + A ++EE++ ++ + + +AIYGL Q KADPCVFRK+VD +++V++VDDIL D+ + A L +K K++G+ +++ GC I R+ +A L+I Q Y++SMVE+FD + +IPAT G K E EE ++P REA+G++MW +T +RPD++ AVRAVAR + PA H A I+ Y
Sbjct: 750 EGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHA---HAPAKRHWDAIQKILGY 1073 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig172438.4459.1 >prot_H-elongata_contig172438.4459.1 ID=prot_H-elongata_contig172438.4459.1|Name=mRNA_H-elongata_contig172438.4459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp MLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNback to top mRNA from alignment at H-elongata_contig172438:299..1333+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig172438.4459.1 ID=mRNA_H-elongata_contig172438.4459.1|Name=mRNA_H-elongata_contig172438.4459.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1035bp|location=Sequence derived from alignment at H-elongata_contig172438:299..1333+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig172438:299..1333+ >mRNA_H-elongata_contig172438.4459.1 ID=mRNA_H-elongata_contig172438.4459.1|Name=mRNA_H-elongata_contig172438.4459.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig172438:299..1333+ (Himanthalia elongata Himel1 dioecious)back to top |