mRNA_H-elongata_contig172246.4451.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172246.4451.1
Unique NamemRNA_H-elongata_contig172246.4451.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig172246.4451.1 vs. uniprot
Match: D7FQM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM3_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 1.570e-81
Identity = 128/141 (90.78%), Postives = 130/141 (92.20%), Query Frame = 1 
Query:    1 QEAHAAMVRGMVDQQTSQIRDAADVGEKVDATAEGLFREHFVWLLDLWVQVKSLAPTRLFIAISWASLVDVQARVSKGKGSTKEASNFTLARFASWAPRLKAWINHKDIQKVARTSGRNTKRTTHELSSTAFLCGRRRR*T 423
            QEAHAAMVRGMVDQQTSQIRDAADVGEKVDA AEGLFREHF WLLDLW+QVKSLAPTRLF A SWA LVDVQARVSKGKGSTKEASNFTLARFASWAPRLKAWINH+DIQKVARTSGRNTKRT    SST FLCGRRRR T
Sbjct:   25 QEAHAAMVRGMVDQQTSQIRDAADVGEKVDAAAEGLFREHFPWLLDLWIQVKSLAPTRLFNATSWALLVDVQARVSKGKGSTKEASNFTLARFASWAPRLKAWINHEDIQKVARTSGRNTKRTR---SSTVFLCGRRRRRT 162
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BLAST of mRNA_H-elongata_contig172246.4451.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.140e-23
Identity = 58/96 (60.42%), Postives = 63/96 (65.62%), Query Frame = 3 
Query:  249 GSVELHLGPVRQLGATTEGVDKS*GYPEGGTDEW*KHQTNHA*AELYGVFVRKKKEVNLIKLSYPENKTRVTKPRAKVLYYISGWLLSKVWTHVRR 536
            G V+     +R      E VD +    EG   E      +    ELYGVFVRKKKE NLIKLSYP+ KTRVTKPRAKVLYYISGWLLSKVWTHVRR
Sbjct:  129 GMVDQQTSQIRDAADVGEKVDAA---AEGLFREHFPWLLDLGVQELYGVFVRKKKEANLIKLSYPDKKTRVTKPRAKVLYYISGWLLSKVWTHVRR 221
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BLAST of mRNA_H-elongata_contig172246.4451.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 7.660e-23
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 3 
Query:  381 ELYGVFVRKKKEVNLIKLSYPENKTRVTKPRAKVLYYISGWLLSKVWTHVRR 536
            ELYGVFVRKKKE NLIKLSYP+NKTRVTKPRAKVLYYISGWLLSK W HVRR
Sbjct:  112 ELYGVFVRKKKEANLIKLSYPDNKTRVTKPRAKVLYYISGWLLSKDWAHVRR 163
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BLAST of mRNA_H-elongata_contig172246.4451.1 vs. uniprot
Match: D8LQS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS2_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.240e-15
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 QEAHAAMVRGMVDQQTSQIRDAADVGEKVDATAEGLFREHF 123
            QEAHAAMVRGMVDQQTSQIRDAA VGEKVDA AEGLFREHF
Sbjct:   25 QEAHAAMVRGMVDQQTSQIRDAAHVGEKVDAAAEGLFREHF 65
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BLAST of mRNA_H-elongata_contig172246.4451.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 6.250e-5
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 3 
Query:  384 LYGVFVRKKKEVNLIKLSYPENKTRVTKPRAKVLYYISGWLLSKVWTHVRR 536
            L G+   K ++ N+I  +YP  +  ++ PR ++LYYI+GW+LSK+ THVRR
Sbjct:  127 LGGLAENKLRDANVITPTYPRTQVALSIPRRRLLYYIAGWVLSKIVTHVRR 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172246.4451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FQM3_ECTSI1.570e-8190.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVM7_ECTSI1.140e-2360.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5R0_ECTSI7.660e-2392.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQS2_ECTSI1.240e-1595.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7M3_9PHAE6.250e-545.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172246contigH-elongata_contig172246:64..1008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size537
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172246.4451.1prot_H-elongata_contig172246.4451.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172246 181..990 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930002.8748074-UTR-H-elongata_contig172246:63..1801622930002.8748074-UTR-H-elongata_contig172246:63..180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172246 64..180 -
1691679241.6078103-UTR-H-elongata_contig172246:63..1801691679241.6078103-UTR-H-elongata_contig172246:63..180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172246 64..180 -
1622930002.9250813-UTR-H-elongata_contig172246:990..10081622930002.9250813-UTR-H-elongata_contig172246:990..1008Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172246 991..1008 -
1691679241.6310897-UTR-H-elongata_contig172246:990..10081691679241.6310897-UTR-H-elongata_contig172246:990..1008Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172246 991..1008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930002.8897176-CDS-H-elongata_contig172246:180..2201622930002.8897176-CDS-H-elongata_contig172246:180..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172246 181..220 -
1691679241.6154487-CDS-H-elongata_contig172246:180..2201691679241.6154487-CDS-H-elongata_contig172246:180..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172246 181..220 -
1622930002.904589-CDS-H-elongata_contig172246:628..9901622930002.904589-CDS-H-elongata_contig172246:628..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172246 629..990 -
1691679241.6231124-CDS-H-elongata_contig172246:628..9901691679241.6231124-CDS-H-elongata_contig172246:628..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172246 629..990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172246.4451.1

>prot_H-elongata_contig172246.4451.1 ID=prot_H-elongata_contig172246.4451.1|Name=mRNA_H-elongata_contig172246.4451.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MVRGMVDQQTSQIRDAADVGEKVDATAEGLFREHFVWLLDLWVQVKSLAP
TRLFIAISWASLVDVQARVSKGKGSTKEASNFTLARFASWAPRLKAWINH
KDIQKVARTSGRNTKRTTHELSSTAFLCGRRRR*
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mRNA from alignment at H-elongata_contig172246:64..1008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172246.4451.1 ID=mRNA_H-elongata_contig172246.4451.1|Name=mRNA_H-elongata_contig172246.4451.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=945bp|location=Sequence derived from alignment at H-elongata_contig172246:64..1008- (Himanthalia elongata Himel1 dioecious)
CAGGAGGCACACGCGGCCATGGTTAGGGGGATGGTCGACCAGCAGACGTC
TCAGATCAGGGACGCTGCTGATGTTGGCGAGAAGGTGGACGCCACCGCCG
AAGGTCTTTTCCGCGAGCACTTTGTTTGGCTTCTTGACCTCTGGGTACAG
GTCAAGTCCCTTGCCCCCACCCGTTTGTTTATAGCGATATCGTGGGCTTC
GCTGGTGGATGTCCAAGCTAGAGTCAGCAAAGGAAAGGGGTCAACGAAGG
AAGCGTCGAACTTCACCTTGGCCCGGTTCGCCAGTTGGGCGCCACGACTG
AAGGCGTGGATAAATCATAAGGATATCCAGAAGGTGGCACGGACGAGTGG
TAGAAACACCAAACGAACCACGCATGAGCTGTGTGGCATCATCAACCAAG
TGGATGAGGTGCGTATCGGCTATAACTAATTGGAAATCTTCCATAGTTTG
TCATAGTATGTGTACACAAGTCGTTCTAATAATTTGAGGTGTAATTATCT
AGCGCCCGAATAAAAACCGCCCAAGAATCTAGACCGAGTGCCCTGAGTGT
GTACAGCGAACGGCACCGGGGTGTTACCCGAGATCCGTGCCTCTTGTTGG
GGGAACAAGCCACCCACTATTGTAGTACGTATGCTACGTTTATTGTAGGC
TTCGGGTTAGGCAACGTTCAGTCGTTTGTATCTTGTTTGGTGTTCAACTG
CAATCTACGACCCCTTCACAACTGTCAACCCGTACACCCCCTTCGCCGCA
TGCTCCGGCTGTTGCTTCTGTACCTTATTGATCACCAGGAGCTCTACGGC
GTTTTTGTGCGGAAGAAGAAGGAGGTGAACTTGATCAAGTTGTCGTATCC
CGAGAATAAGACCCGCGTCACCAAACCACGGGCGAAGGTGCTGTATTACA
TCAGCGGGTGGTTGCTGAGCAAGGTCTGGACGCACGTGAGACGGC
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Coding sequence (CDS) from alignment at H-elongata_contig172246:64..1008-

>mRNA_H-elongata_contig172246.4451.1 ID=mRNA_H-elongata_contig172246.4451.1|Name=mRNA_H-elongata_contig172246.4451.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig172246:64..1008- (Himanthalia elongata Himel1 dioecious)
ATGGTTAGGGGGATGGTCGACCAGCAGACGTCTCAGATCAGGGACGCTGC
TGATGTTGGCGAGAAGGTGGACGCCACCGCCGAAGGTCTTTTCCGCGAGC
ACTTTGTTTGGCTTCTTGACCTCTGGGTACAGGTCAAGTCCCTTGCCCCC
ACCCGTTTGTTTATAGCGATATCGTGGGCTTCGCTGGTGGATGTCCAAGC
TAGAGTCAGCAAAGGAAAGGGGTCAACGAAGGAAGCGTCGAACTTCACCT
TGGCCCGGTTCGCCAGTTGGGCGCCACGACTGAAGGCGTGGATAAATCAT
AAGGATATCCAGAAGGTGGCACGGACGAGTGGTAGAAACACCAAACGAAC
CACGCATGAGCTATGGTTAGGGGGATGGTCGACCAGCAGACGTCTCAGAT
CAGGGACGCTGCTGATGTTGGCGAGAAGGTGGACGCCACCGCCGAAGGTC
TTTTCCGCGAGCACTTTGTTTGGCTTCTTGACCTCTGGGTACAGGTCAAG
TCCCTTGCCCCCACCCGTTTGTTTATAGCGATATCGTGGGCTTCGCTGGT
GGATGTCCAAGCTAGAGTCAGCAAAGGAAAGGGGTCAACGAAGGAAGCGT
CGAACTTCACCTTGGCCCGGTTCGCCAGTTGGGCGCCACGACTGAAGGCG
TGGATAAATCATAAGGATATCCAGAAGGTGGCACGGACGAGTGGTAGAAA
CACCAAACGAACCACGCATGAGCTGAGCTCTACGGCGTTTTTGTGCGGAA
GAAGAAGGAGGTGAGAGCTCTACGGCGTTTTTGTGCGGAAGAAGAAGGAG
GTGA
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