mRNA_H-elongata_contig17221.4450.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17221.4450.1
Unique NamemRNA_H-elongata_contig17221.4450.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17221.4450.1 vs. uniprot
Match: D8LSA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSA0_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 1.360e-53
Identity = 128/204 (62.75%), Postives = 152/204 (74.51%), Query Frame = 1 
Query:    1 SMQASLELEQERARSLQQEVTVLVHDLEAARATEAVVEKQRQEHANLAADAFAKASRLEQQLQQEKALLRTIGAAVPASVGSESQIQQLLSSKLLDKQARLEESVRERATLSVKLKDALERANRAEYELRESRGDSLETGADGE-----------GKRESRRRLGTGFGGRSSGGAA-WSRLAPIAKHKKIATAIDVIDRRTLQ 576
            S QASLELEQER RSL+QEV +L HDL++ARATEAVVE+QRQEHA +AAD+FAKASRLEQQLQQE+A  + + A+VP   G E+QIQ  LSSKLLDKQARLEESV ER TL+ KL++A +RA RAE ELRESRG++LE G               G   +RR    G  GR S  A  WSRL PIAKHKKIA+A+DV+DR+TL+
Sbjct:  659 SCQASLELEQERTRSLKQEVDLLKHDLDSARATEAVVERQRQEHAKMAADSFAKASRLEQQLQQERASAKRLEASVPTPAGPEAQIQ-ALSSKLLDKQARLEESVTERTTLAAKLREASDRAFRAEQELRESRGETLEAGGXXXXXXXXXXXXXVGVMRARR----GRQGRGSPTAGTWSRLGPIAKHKKIASAVDVLDRQTLK 857
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BLAST of mRNA_H-elongata_contig17221.4450.1 vs. uniprot
Match: A0A6H5L6L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6L5_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 3.430e-51
Identity = 127/206 (61.65%), Postives = 152/206 (73.79%), Query Frame = 1 
Query:    1 SMQASLELEQERARSLQQEVTVLVHDLEAARATEAVVEKQRQEHANLAADAF---AKASRLEQQLQQEKALLRTIGAAVPASVGSESQIQQLLSSKLLDKQARLEESVRERATLSVKLKDALERANRAEYELRESRGDSLETGADGE----------GKRESRRRLGTGFGGRSSGGAA-WSRLAPIAKHKKIATAIDVIDRRTLQ 576
            S QASLELEQER RSLQQEV +L HDL++ARATEAVVE+QRQEHA +AAD+F   +KASRLEQQLQQE+A  + + A+VP   G E+QIQ  LSSKLL+KQARLEESV ER TL+ KL++A +RA RAE ELRESRG++LE G              G   +RR    G  GRSS  A  WSR  PIAKHKKIA+A+DV+DR+TL+
Sbjct:  696 SCQASLELEQERTRSLQQEVGLLKHDLDSARATEAVVERQRQEHAKMAADSFGKCSKASRLEQQLQQERASAKRLEASVPTPAGPEAQIQ-ALSSKLLEKQARLEESVTERTTLTAKLREASDRAFRAEQELRESRGETLEAGGXXXXXXXXXXXXVGVMRARR----GRQGRSSPTAGTWSRFGPIAKHKKIASAVDVLDRQTLK 896
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17221.4450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSA0_ECTSI1.360e-5362.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6L5_9PHAE3.430e-5161.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17221contigH-elongata_contig17221:223..5060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004300.1
Exons6
Model size576
Cds size573
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930002.686244-UTR-H-elongata_contig17221:222..2251622930002.686244-UTR-H-elongata_contig17221:222..225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17221 223..225 +
1691679241.543-UTR-H-elongata_contig17221:222..2251691679241.543-UTR-H-elongata_contig17221:222..225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17221 223..225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930002.7026486-CDS-H-elongata_contig17221:225..2791622930002.7026486-CDS-H-elongata_contig17221:225..279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17221 226..279 +
1691679241.5522804-CDS-H-elongata_contig17221:225..2791691679241.5522804-CDS-H-elongata_contig17221:225..279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17221 226..279 +
1622930002.726401-CDS-H-elongata_contig17221:881..9811622930002.726401-CDS-H-elongata_contig17221:881..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17221 882..981 +
1691679241.56188-CDS-H-elongata_contig17221:881..9811691679241.56188-CDS-H-elongata_contig17221:881..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17221 882..981 +
1622930002.7436805-CDS-H-elongata_contig17221:1834..19381622930002.7436805-CDS-H-elongata_contig17221:1834..1938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17221 1835..1938 +
1691679241.57193-CDS-H-elongata_contig17221:1834..19381691679241.57193-CDS-H-elongata_contig17221:1834..1938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17221 1835..1938 +
1622930002.7629216-CDS-H-elongata_contig17221:3328..35101622930002.7629216-CDS-H-elongata_contig17221:3328..3510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17221 3329..3510 +
1691679241.5797362-CDS-H-elongata_contig17221:3328..35101691679241.5797362-CDS-H-elongata_contig17221:3328..3510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17221 3329..3510 +
1622930002.778215-CDS-H-elongata_contig17221:4067..41581622930002.778215-CDS-H-elongata_contig17221:4067..4158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17221 4068..4158 +
1691679241.5874257-CDS-H-elongata_contig17221:4067..41581691679241.5874257-CDS-H-elongata_contig17221:4067..4158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17221 4068..4158 +
1622930002.816295-CDS-H-elongata_contig17221:5018..50601622930002.816295-CDS-H-elongata_contig17221:5018..5060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17221 5019..5060 +
1691679241.5957098-CDS-H-elongata_contig17221:5018..50601691679241.5957098-CDS-H-elongata_contig17221:5018..5060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17221 5019..5060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17221.4450.1prot_H-elongata_contig17221.4450.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17221 226..5060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17221.4450.1

>prot_H-elongata_contig17221.4450.1 ID=prot_H-elongata_contig17221.4450.1|Name=mRNA_H-elongata_contig17221.4450.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
MQASLELEQERARSLQQEVTVLVHDLEAARATEAVVEKQRQEHANLAADA
FAKASRLEQQLQQEKALLRTIGAAVPASVGSESQIQQLLSSKLLDKQARL
EESVRERATLSVKLKDALERANRAEYELRESRGDSLETGADGEGKRESRR
RLGTGFGGRSSGGAAWSRLAPIAKHKKIATAIDVIDRRTLQ
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mRNA from alignment at H-elongata_contig17221:223..5060+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17221.4450.1 ID=mRNA_H-elongata_contig17221.4450.1|Name=mRNA_H-elongata_contig17221.4450.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4838bp|location=Sequence derived from alignment at H-elongata_contig17221:223..5060+ (Himanthalia elongata Himel1 dioecious)
TCGATGCAGGCGTCTCTGGAGCTTGAGCAGGAGCGCGCGCGGTCACTTCA
GCAAGAGGTGCAGTCTCAGCAAAAACGTCTTCGGGGAGCGAAGGGGGGCA
GAGGAAAACGAGTAAACGATCAAGGCATTGAAACGGCTCAATTGGCGCCA
ATTCGATTGTGGGATGTGATGTAATGTAATATAATGTAATAAAATGTAAT
GTAATGTAATAAAATGTAATATAATGTAATAAAATGTAATGTAATGTAAT
GTAATGTAATATAATATAATATAATGTAGATAATGTAATGTAATGTAGAT
AATGTAATGTAATGTAATGTAATATAATGTAATGTAATATAATAATGTAA
TGTAATATAATATGTAATGTAATATAATAATGTAATGTAATGTGCTGTAG
TTGGCGGAGAGAGGGAAGGGATGGCAACGAAAAGAAAAAAGATTGGAGGC
CAAGGCAGGACGTAATGTAACATAACCTAACGTAACACGGGTGATACTCA
CTCGTCATCATCGTTTTCGACTACCGCGTCGATCTGTCGATGCTCGTCCC
TCTCTTTCTTTTGTTCTCGATGACGTCATGATGATGGTGATGTTCTCGAT
CGGCTCTTGAAATTACGTCATGATGATGATGATGTACTTGATCGGCGTGA
AATTGACAGGTGACGGTGCTCGTGCACGACCTCGAGGCGGCAAGGGCAAC
GGAAGCTGTCGTGGAAAAGCAACGGCAAGAGCACGCCAACCTAGCCGCTG
ACGCCTTCGGTAAATATCGCGGCCCCGACCTCGCTTTCGTTGTCTCGTGG
TGGGCAATGGGTCATCAACGAATCCATATATATATATATATATATATAGA
GAGAGAGAGACATGACTGTGGTGTAATCGTGGTAGTATAGATGTTGGTTT
CACGTGGCGGCGCCGCCTTCTCTTTCGATCTTGTGACCACAAGCAGCACG
TGATGCGTGACGTAGTCGCTCTGCGTGACGTGGTTTGCATGGCGGGTAGA
ATATGCTGGCACCACTTTGCAACGTGAGCACTGGCGTCAGCACTAACTCA
TAGTAAGATGGAAGGATATTGCCGTTTTCGATACAAGTGCGAGTACCAGT
ATCTCGCAAGCTGGTTCGATCTCCAGGGTCTTCGTCTGATAAGTTTTCTT
CCCTCTCGAGGAAGCATTACCTGCCCACCATCTCCGTTGTACCTATCATT
TTGTCGGGAAAGGGATGCGTATGACAACGCTCGTCACAAGGATTGCGATC
TTGGCTTGAAGGTCTGAGATTTCAAGCTCCCCCATGTCCCCCCCGACCCG
TCCTCCCCCGGGTTTAGCTTTTACTATAAATACCTACAATGTAAGCACGA
CGCTGGTCAGCGTGACGTTACGCTGATTGGCGTACAGTAGAGGTCACAAA
CTGCGCGTAACATTTTATTTTTGTTTATTTTTTCTCCCGCGAACAGATAT
TTTGAACCAGCGGCCATTATAAACATGAAACTATACCGGCCGGGGCCCCG
ACCTTCCCCTACCTTCCCCCTTCCCCGTGGGCATGCACAACACGCCTTCC
GTCTTGCCTTGAAAACAATCAACAGTGTCGCGCGTGTCATTGTCGTCTTG
TGCGCGTTCCAGCCAAGGCTTCCCGCTTGGAGCAGCAACTGCAACAAGAG
AAAGCATTGTTGCGGACTATCGGAGCCGCCGTACCGGCCTCGGTGGGCTC
GGAGTCCCAGATACAGGTGGGTGTGCCTCATCCTACGGCACGCGTTTGGG
ACTACCCTCTCTTGCTGTGGTATTAAGGCCGGGTCTTATCCGAATACAAA
AAATTTAATTTCCAGCCGATTTAAATTTAAATCGGGCTCTGATTGGACGA
AGGCTAGGCGTTATTTAGCTCTCCACCAATCAGAGCCCAATTTTAACTGA
AATCGGCTGGAAACTTTAATTTTTGTATTCCGATAAGACCCGGCCTAATA
GTAACTACTCTAGGGGTTGCGGAGGTGCATCCTCGCTTGTGTTTTGTAGT
AATGGTGGCCTTGACCAGAATCACAATATTTTCTATTAATACTTAATACT
TAATACGAAAGAAGGGACGCCATGACGAAGCGCATTCTTCGAAGAGACCC
CTCCCGGACATTCTCGTTTGGGGAGGGTGGGGAGGGGGGGGGGAGTTGGT
AGTTATGCTGAAGGCGTGTCGGTTCCTAACGGACATAAACCACAACCACA
ACCACGGATCCCAACAATGTCGGAACGGAGCGATATACCGAGTTTGCCGT
GGGTCAGGCTGCGTTTCACGAGGATGATACCATATTTTGTTATTAATATT
AATAGTCATCATCCTTGTAGGCTGCGTTTGCTACGCCCATTCAACGGGCG
CGACTAGACTTCGTTTTTATCGCAAAGGGACGATTTTATCTTCGCGCGAA
CGCATAAGCGCCGCACGCACCCCCACATACTAATACACACTAATACACAC
TAATACACACACGACAGTGATTCAGACTATAGTATGCTCATGGATATTCC
TGGCGGGGTACACTCTCATAAGTCCATAGTCTAGTTGCTTTAGGACTTTT
GAGCAATTAATCCCTTCATTGTTCAGCAGGCATCCTATAGAATGTTCGAA
TGTGATGCGTTTTTTTTTTCGCCTTGTTATGTGTCACTCCTTTGGAAAGA
GAAGAGAGAGGCCTCTTAACTCTTCAACTGAGGCCATACTGCCTGAATCC
CTTCAATCATTCATCATCAATCATTATGCCCTAGAACTGATAAATAACAG
TTGCACTTTTACAGTTCCGTGCCACTACAGAAGGGCCAACAACGGGACAA
GGGAAGGACAGCGCAATCCGCTCGATTTTTGACGCACCGCTCGATTTTCT
AACAGGCGAGGTGATACCGTGCAATGCCCAGCAGCAGTAACCGAGCCTTG
GCCGCAGTGCCTCAATTCCCCAACGAGTGGCGAAAGGTTGTTCCACTTTG
CATCGGTCGATGAAGCCCCCCCCCCCACCCAACCCCCCCAGTCTACCCAT
TCCCCTCCCTCCCTCCCTCATACCTCCCCCTTGCCTCCTCGCATTCGCTC
GTGTATGCGCTACGTGCACACAACATATCTCCGTGTCACTGGCGATGGTA
ACGAAGCAGTTACTGAGCTCCAAGCTCCTGGACAAGCAAGCTCGTCTCGA
AGAGTCGGTACGGGAGCGCGCCACCCTGTCGGTAAAGCTCAAGGATGCGC
TGGAGCGCGCCAACCGGGCCGAGTACGAGCTTCGGGAGTCGAGAGGCGAC
TCTCTAGAGACTGGAGCCGACGGTGAGGGAAAGAGAGAGTGAAAACGGCG
TGACTTGGGCTTACAGAGAATGCACACGGCCTCATCTAACATCATCTAAC
ATGATCTAACCTAACCTAGCCTATCGTCCATCCTTTGATTGTCTCCTTAT
GTGCGTGCCATTCGAATTATTTAATCGAATAGCGAAATTACGGCGAAAAC
TAAATGTACCGTTAGGTGGCAGGGTTCATACGCTTCATGGACGGGGGAAC
CTCCCCATGCTTTCTTTTCGAGGCAGTAGTTTGCGAAACACGCCGCGAGA
GAGGCTTTTATAAAGCTTACAGCGACGGCCGACAGCTTCTCAGATCCTTG
AAGGCAGTGGTCATTTATTCTTGCGGTGTCGTTAGAACTCGGTTGTTGAT
TTTTTTAGAAGGAAAATCAGATGGACACCCATCAGTCCACCCCCTCTTTC
CCCCGCGCAAATATTATATACACTGGCGTCACCCGAGGAGATATGGCCTT
CCGTTCGCATGTCATAGCCCTCTCATTTTTTTTATCTCTTCCAATCTCCT
CGCTTTGACGGCGTGAGATCACGTAGTCGGGGCACCCGGCGTGAGATCAC
GTAGGAGACTGGGCACCGGCTTCGGCGGCAGGAGTTCGGGAGGAGCTGCA
TGGTCTAGGCTGGCTCCCATCGCCAAACACAAGAAGGTGTTGGTGTATTC
TCATAGTGTATACTGTATTAATACTACTAATACTACTAATAATACTAATA
CTACTAATAATACTAATACTACTAATAATACTAATACTACTAATAATACT
AATACTACTAATAATACTACTACTACTACTAATACTACTACTACTACTAC
TACTACTACTACTACTACTACTACTACTAAAAATACTACTAATAATAATA
CTACTACTAATAATAAAACTAATACTGCTAATAAAACTAATACTAGGTTC
TTCTAATAATAATACTAATACTACTAATAATACTACTAATCGGTGTAGTC
TATAACTGTATAAAATGTATAGTATATTGCCCACAGACACGGCGGTTTTA
GTGGACACGGCGCTTGTGGAGATCGGGGTGGCCCAGCACGGTACATGAGG
GTTGCGTGTACTGTATCTACATATATCTAGAAGTGTATTGTTAACGGATC
ATGCTTTTTGTTGTTGCTATTGTAGCTGCAGTCAGCACAGGTCTCGATTG
GTGTAGCTGACTGCTCCGTCCATTAGCAAATTGGTAGTAGTTGGTGTTTT
ACATTACCTCTTTTAGACTTGATAGCTCAAAACCTTGAGCGTGGCCATCG
AGAAGCAAACGCAGTCGGGCTTGCCTGTCCTCCCGTTCGGGCTACATATC
TAGCTTAGAGTATGTGCTTTGATCTATCTACTAACTATATCATAGGCACC
ACAAATATTGACTAGATCTCACACCAATCTATGATTCGCATGTCAACAAC
GTCTGCCGCAAGAAGTTCGACCACATATATCTCACACACACAAACGCACT
TCCTATTCTATCGCCTATCGTGCGTGGTATCTTGTCTACCAACTAGATCG
CCACGGCTATCGACGTCATCGACCGCCGAACCCTCCAA
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Coding sequence (CDS) from alignment at H-elongata_contig17221:223..5060+

>mRNA_H-elongata_contig17221.4450.1 ID=mRNA_H-elongata_contig17221.4450.1|Name=mRNA_H-elongata_contig17221.4450.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig17221:223..5060+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGCGTCTCTGGAGCTTGAGCAGGAGCGCGCGCGGTCACTTCAGCA
AGAGATGCAGGCGTCTCTGGAGCTTGAGCAGGAGCGCGCGCGGTCACTTC
AGCAAGAGGTGACGGTGCTCGTGCACGACCTCGAGGCGGCAAGGGCAACG
GAAGCTGTCGTGGAAAAGCAACGGCAAGAGCACGCCAACCTAGCCGCTGA
CGCCTTCGGTGACGGTGCTCGTGCACGACCTCGAGGCGGCAAGGGCAACG
GAAGCTGTCGTGGAAAAGCAACGGCAAGAGCACGCCAACCTAGCCGCTGA
CGCCTTCGCCAAGGCTTCCCGCTTGGAGCAGCAACTGCAACAAGAGAAAG
CATTGTTGCGGACTATCGGAGCCGCCGTACCGGCCTCGGTGGGCTCGGAG
TCCCAGATACAGCCAAGGCTTCCCGCTTGGAGCAGCAACTGCAACAAGAG
AAAGCATTGTTGCGGACTATCGGAGCCGCCGTACCGGCCTCGGTGGGCTC
GGAGTCCCAGATACAGCAGTTACTGAGCTCCAAGCTCCTGGACAAGCAAG
CTCGTCTCGAAGAGTCGGTACGGGAGCGCGCCACCCTGTCGGTAAAGCTC
AAGGATGCGCTGGAGCGCGCCAACCGGGCCGAGTACGAGCTTCGGGAGTC
GAGAGGCGACTCTCTAGAGACTGGAGCCGACGGTGAGGGAAAGAGAGACA
GTTACTGAGCTCCAAGCTCCTGGACAAGCAAGCTCGTCTCGAAGAGTCGG
TACGGGAGCGCGCCACCCTGTCGGTAAAGCTCAAGGATGCGCTGGAGCGC
GCCAACCGGGCCGAGTACGAGCTTCGGGAGTCGAGAGGCGACTCTCTAGA
GACTGGAGCCGACGGTGAGGGAAAGAGAGAATCACGTAGGAGACTGGGCA
CCGGCTTCGGCGGCAGGAGTTCGGGAGGAGCTGCATGGTCTAGGCTGGCT
CCCATCGCCAAACACAAGAAGATCACGTAGGAGACTGGGCACCGGCTTCG
GCGGCAGGAGTTCGGGAGGAGCTGCATGGTCTAGGCTGGCTCCCATCGCC
AAACACAAGAAGATCGCCACGGCTATCGACGTCATCGACCGCCGAACCCT
CCAAATCGCCACGGCTATCGACGTCATCGACCGCCGAACCCTCCAA
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