mRNA_H-elongata_contig172090.4444.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172090.4444.1
Unique NamemRNA_H-elongata_contig172090.4444.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig172090.4444.1 vs. uniprot
Match: A0A8F0FAP1_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAP1_9PHAE)

HSP 1 Score: 552 bits (1422), Expect = 2.290e-197
Identity = 283/303 (93.40%), Postives = 292/303 (96.37%), Query Frame = 1
Query:    1 MLFDNYCNFFSNSIFIFLLIATVFYWFSLRFTRVDFYYKFAKINSRVATAILFIFLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFLIIFLSLSKDSEISFTXXXXXXXXARAENIEVRDLYNLFIDPLDKMSASKKKEIRESRKLEFLYNLDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY*HLRLIKGWVGKGPAILASIGFFV 909
            M FDNYCNFFSNSIFIFLLI+TVFYWFSLRFT+VDFYYKFAK+NSRVAT ILF+FLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFLIIFLSLSKDSEISFT        ARAENIE+RDLYN+F+DPLDKMSASK+KE+RESRKLEFLYNLDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY HLRLIKGWVGKGPAILASIGFFV
Sbjct:    1 MFFDNYCNFFSNSIFIFLLISTVFYWFSLRFTKVDFYYKFAKLNSRVATIILFVFLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFLIIFLSLSKDSEISFTSYGSYEEYARAENIEIRDLYNVFLDPLDKMSASKQKELRESRKLEFLYNLDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHLRLIKGWVGKGPAILASIGFFV 303          
BLAST of mRNA_H-elongata_contig172090.4444.1 vs. uniprot
Match: A0A8F0F862_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F862_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 6.260e-121
Identity = 194/308 (62.99%), Postives = 229/308 (74.35%), Query Frame = 1
Query:    1 MLFDNYCNFFSNSIFIFLLIATVFYWFSLRFTRVDFYYKFAKINSRVATAILFIFLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFLIIFLSLSKDSEISFTXXXXXXXXARAENIEVRDLYNLFIDPLDKMSASKKKEIRESR-----KLEFLYNLDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY*HLRLIKGWVGKGPAILASIGFFV 909
            M+ DNY N F NS+FI L I+++FYW SLR T+    Y  AK  +R+A   LFIFL +RW   GYFPLSNLYESLLFL+C++  V+Q +EY+T+SK FG I+LP++LFIT FADLTLPLEM+KASALVPALQSNWLMMHVSLMMLSYAIL++GSL SI+FLI FL L K+S  S T          A  IE      L  + ++       + I++       K++FL  LDNW YRTISLGFP LTIGIIAGAVWANEAWGSYWSWDPKETWALITWL+FAAY H+RLI GW GKGPAILAS+GFFV
Sbjct:    1 MVADNYFNIFKNSLFICLFISSIFYWVSLRITKFKMLYTVAKFTARIANLSLFIFLATRWGNYGYFPLSNLYESLLFLACLLSLVHQILEYQTQSKFFGTIILPIILFITSFADLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLLGSLFSIIFLITFLPLPKESS-SITKDFFSTQSEIALKIEEDFQKYLNSNSVEAGGIQINESIQKYYDLNLLKIKFLITLDNWSYRTISLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHVRLIVGWSGKGPAILASLGFFV 307          
BLAST of mRNA_H-elongata_contig172090.4444.1 vs. uniprot
Match: A0A8E5XRE0_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRE0_9PHAE)

HSP 1 Score: 354 bits (909), Expect = 1.880e-119
Identity = 189/304 (62.17%), Postives = 229/304 (75.33%), Query Frame = 1
Query:    1 MLFDNYCNFFSNSIFIFLLIATVFYWFSLRFTRVDFYYKFAKINSRVATAILFIFLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFLIIFLSLSKDSEISFTXXXXXXXXARAENIEVRD-LYNLFIDPLDKMSASKKKEIRESRKLEFLYNLDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY*HLRLIKGWVGKGPAILASIGFFV 909
            M F+ Y +FF+NS+F+ L I+T+FYW SL F ++   Y  A+  S +A  ILF+FL +RWI  GYFPLSNLYESLLFLSC++L V++F+EY+T+SK+FGA LLP++L IT FADLTLPLEM+KA+ALVP+LQSNWLMMHVSLMMLSYA+LI+GSL+SILFLI+ L +  + E  FT            N E  + + NL      K    + K +        L NLDNW YRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWL+FAAY H+RLIKGW G+ PA+L SIGFFV
Sbjct:    1 MNFEIYSSFFTNSLFLCLFISTIFYWISLIFNKLKRSYSIARSTSLIANIILFLFLANRWIVFGYFPLSNLYESLLFLSCMLLLVHRFLEYRTQSKLFGATLLPIILLITSFADLTLPLEMQKANALVPSLQSNWLMMHVSLMMLSYAVLIIGSLISILFLIVCLPIKVNYEEKFTNT----------NYEAGESIINLITQQPIKGELEQLKILYNMDYNSLLNNLDNWSYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHVRLIKGWDGEKPAMLGSIGFFV 294          
BLAST of mRNA_H-elongata_contig172090.4444.1 vs. uniprot
Match: A0A8F0F9V5_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9V5_9PHAE)

HSP 1 Score: 350 bits (898), Expect = 1.320e-117
Identity = 191/310 (61.61%), Postives = 234/310 (75.48%), Query Frame = 1
Query:    1 MLFDNYCNFFSNS------IFIFLLIATVFYWFSLRFTRVDFYYKFAKINSRVATAILFIFLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFLIIFLSLSKDSE-ISFTXXXXXXXXARAENIEVRDLYNLFIDPLDKMSASKKKEIRESRKLEFLYNLDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY*HLRLIKGWVGKGPAILASIGFFV 909
            MLF NY +  SNS      +FI  L++TVFYWFSL F  +  +   AK+ SR A+ ILF+FL +RW+++GYFPLSNLYESLLFLSCI+LFVYQ +EYKT+S +FG I++P+VLFITGFA LTLPLEM+KA+ALVPALQSNWLMMHVSLMMLSYAILI+GS  SI+++  FL L    + I            ++ N+       L +D +     +++++I  + + +FLY++DNW YR ISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY HLRLI G  GK PA+LASIGFFV
Sbjct:    1 MLFQNYFDACSNSSTFNNILFISCLVSTVFYWFSLGFKNIKIFGSLAKVTSRFASLILFVFLSNRWLESGYFPLSNLYESLLFLSCILLFVYQILEYKTQSSLFGCIIVPIVLFITGFAALTLPLEMQKANALVPALQSNWLMMHVSLMMLSYAILIMGSAFSIVYVGAFLELEDYIKTIPVRAAEYEKQIRKSLNLTRSQFLYLGLDVI----YNEEEDIVINNRTKFLYHIDNWSYRAISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHLRLIVGLNGKKPALLASIGFFV 306          
BLAST of mRNA_H-elongata_contig172090.4444.1 vs. uniprot
Match: A0A2I4Q2E4_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2E4_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 3.000e-117
Identity = 181/302 (59.93%), Postives = 229/302 (75.83%), Query Frame = 1
Query:    1 MLFDNYCNFFSNSIFIFLLIATVFYWFSLRFTRVDFYYKFAKINSRVATAILFIFLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFLIIFLSLSKDSEISFTXXXXXXXXARAENIEVRDLYNLFIDPLDKMSASKKKEIRESRKLEFLYNLDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY*HLRLIKGWVGKGPAILASIGFF 906
            M+ D+Y   F N +F  L  +T+FYWFSL+F  +   + FA+INS  AT +LF FLL+RW+  GYFP+SNLYESLLFLSC++L ++Q +EY+T+S+IFGA+LLP +LFIT FADLTLPLEM+KA+ALVP+LQSNWLMMHVSLM+LSYAIL++GSL SI+FL++FL   + +EI+             + ++++ +    I     + A +          EFL+ LDNW Y+ ISLGFP LTIGIIAGAVWANEAWGSYWSWDPKETWALITWL+FAAY H+RLIKGW GKGPAILAS+GFF
Sbjct:    1 MIMDDYFTGFKNILFFCLFSSTIFYWFSLKFQILKKLHDFARINSIFATFLLFFFLLNRWVTYGYFPISNLYESLLFLSCLLLIIHQILEYQTQSRIFGALLLPSILFITSFADLTLPLEMQKATALVPSLQSNWLMMHVSLMLLSYAILLLGSLFSIIFLVLFLPSERKNEIN-------------DKLKIKTITKKSIFAFYNIKAFEPY----IPSTEFLFILDNWSYKMISLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHIRLIKGWSGKGPAILASLGFF 285          
BLAST of mRNA_H-elongata_contig172090.4444.1 vs. uniprot
Match: A0A516ICR2_9PHAE (Cytochrome c biogenesis protein CcsA n=27 Tax=Laminariales TaxID=2886 RepID=A0A516ICR2_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 5.010e-115
Identity = 190/305 (62.30%), Postives = 227/305 (74.43%), Query Frame = 1
Query:    7 FDNYCN---FFSNSIFIFLLIATVFYWFSLRFTRVDFYYKFAKINSRVATAILFIFLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFLIIFLSLSKDSE-ISFTXXXXXXXXARAENIEVRDLYNLFIDPLDKMSASKKKEIRESRKLEFLYNLDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY*HLRLIKGWVGKGPAILASIGFFV 909
            F N CN    F+N +F   L++T+FYWFSL F  +  +   AKI SR AT  LF+FLL+RWIQ GYFPLSNLYESLLFLSCI+LFV Q +E KT+S +FG I++P+VLFITGFA LTLPLEM+KASALVPALQSNWLMMHVSLMMLSYAILI+GS  +I+++  FL L    + I            +  N+       L +D +     +++++I  + + +FLYN+DNW YR ISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY HLRLI G  GK PA+LASIGFFV
Sbjct:    6 FFNVCNDSNIFNNILFACCLVSTIFYWFSLGFKNIKVFSTLAKITSRFATLSLFVFLLNRWIQFGYFPLSNLYESLLFLSCILLFVSQALESKTQSLLFGCIIVPIVLFITGFAALTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILIIGSSFAIVYVGSFLELEDYIKTIPVRAAEYEKHMRKTLNLTKSQFLYLGLDVI----YNEEEDIVINNRTKFLYNIDNWSYRAISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHLRLIVGLNGKKPALLASIGFFV 306          
BLAST of mRNA_H-elongata_contig172090.4444.1 vs. uniprot
Match: A0A7S6U9V9_9STRA (Cytochrome c biogenesis protein CcsA n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V9_9STRA)

HSP 1 Score: 336 bits (862), Expect = 9.080e-112
Identity = 187/332 (56.33%), Postives = 226/332 (68.07%), Query Frame = 1
Query:    1 MLFDNYCNFFSNSIFIFLLIATVFYWFSLRFTRVDFYYKFAKINSRVATAILFIFLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFLIIFLSLSKD-SEISFTXXXXXXXXARAENIEVRDLYNLFIDPLDKMSASKKKEIRESR----------------------------KLEFLYNLDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY*HLRLIKGWVGKGPAILASIGFFV 909
            M+ D Y NFF N IF FL I+ + YW S  F      Y  A+INS +A  IL +FL++RWI +GYFPLSNLYESLLFLSCI+LF++Q IEYK +SK+ GAILLP++LFI GF+ LTLP+EM+KAS+LVPALQSNWLMMHVSLMMLSYA LI+GSL+SILF +IF++  KD S++           +     E+ D+    +   D ++  K     +S                             ++  L+ +D W YR ISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY H+RLIKGW GK PA LASIGFFV
Sbjct:    1 MILDTYQNFFINIIFGFLFISLICYWISFVFKEFQICYIAARINSYIANIILVVFLMNRWINHGYFPLSNLYESLLFLSCILLFIHQIIEYKIQSKLLGAILLPIILFINGFSSLTLPIEMQKASSLVPALQSNWLMMHVSLMMLSYATLILGSLLSILFSLIFVTAPKDLSKLVKPWERPFKTNSFERLYELTDIDRYELPQQDFLTRGKFTASSDSFFEISPGLQTAIPNYDWRYEFSRSFSVIFRIRLLHKIDIWSYRIISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHIRLIKGWHGKRPAFLASIGFFV 332          
BLAST of mRNA_H-elongata_contig172090.4444.1 vs. uniprot
Match: A0A2R4QPY5_9PHAE (Cytochrome c biogenesis protein CcsA n=4 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPY5_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 4.160e-110
Identity = 188/328 (57.32%), Postives = 226/328 (68.90%), Query Frame = 1
Query:    1 MLFDNYCNFFSNSIFIFLLIATVFYWFSLRFTRVDFYYKFAKINSRVATAILFIFLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFL---IIFLSLSKDSE-------------ISFTXXXXXXXX---------ARAENIEVRDLYNLFIDPLDKMSASKKKEIRESRKLEFLYNLDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY*HLRLIKGWVGKGPAILASIGFFV 909
            ML +NYCN  +NS+FI + I+T  YWF L F  +  +    KI SR AT  +F+FLL RWI  GYFPLSNLYESLLFLS I+LF+YQF+E K +S IFG I+LPLVL I+GF++LTLPLEM+KASALVPALQSNWLMMHVSLMMLSYAIL++GS  SI++L   I+FL   +  E             I+FT                 + +   ++  L N+F++         ++ + +S +  FL  LD W  RTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY HLRLI G  GKGPA LAS+ FFV
Sbjct:    1 MLSENYCNLLNNSLFILVFISTALYWFRLSFKSITIFNTIGKITSRFATLSIFLFLLIRWIDYGYFPLSNLYESLLFLSFILLFLYQFLESKAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTSIVFLYNLESVEKRYFDYQEFMRGLINFTRGMNLTREDYQTRSSIQSPSACCQIISLNNIFLE---------QEALAQSARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHLRLIVGVTGKGPACLASLAFFV 319          
BLAST of mRNA_H-elongata_contig172090.4444.1 vs. uniprot
Match: A0A1L2F1W2_9PHAE (Cytochrome c biogenesis protein CcsA n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1W2_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 1.460e-105
Identity = 182/325 (56.00%), Postives = 216/325 (66.46%), Query Frame = 1
Query:   10 DNYCNFFSNSIFIFLLIATVFYWFSLRFTRVDFYYKFAKINSRVATAILFIFLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFLIIFL------------------------SLSKDSEISFTXXXXXXXXARAENI-EVRDLYNLFIDPLDKMSASKKKEIRESRKLEFLYNLDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY*HLRLIKGWVGKGPAILASIGFFV 909
            +NY N  +N +F  + I+T  YWF L F  V  +    +I SR AT  +F+FLL RW++ GYFPLSNLYESLLFLS I+LF YQF+E K KS IFG I+LP+VL I+GFA+LTLPLEM+KA ALVPALQSNWLMMHVSLMMLSYAIL++GS  SI++L+  L                        +L+K   ++            A    E+  L N+F++         ++   ES +  FL  LD W  RTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY HLRLI G  GKGPA LASI FFV
Sbjct:    4 ENYFNLLNNILFFLVFISTAIYWFRLSFKFVTIFNIIGEITSRFATINIFLFLLIRWVEYGYFPLSNLYESLLFLSFILLFSYQFLESKAKSPIFGGIILPIVLLISGFAELTLPLEMQKAGALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTLLVFSYTIRPFEKRYFDYQEFMRGLVNLAKGMTLTREDYKIRSSIQSAYACPEIISLNNIFLE---------QEAFAESARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHLRLIVGVTGKGPAFLASIAFFV 319          
BLAST of mRNA_H-elongata_contig172090.4444.1 vs. uniprot
Match: A0A2U9NM76_9STRA (Cytochrome c biogenesis protein CcsA n=1 Tax=Proboscia sp. TaxID=1923967 RepID=A0A2U9NM76_9STRA)

HSP 1 Score: 317 bits (811), Expect = 1.210e-104
Identity = 172/301 (57.14%), Postives = 211/301 (70.10%), Query Frame = 1
Query:   10 DNYCNFFSNSIFIFLLIATVFYWFSLRFT-RVDFYYKFAKINSRVATAILFIFLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFLIIFLSLSKDSEISFTXXXXXXXXARAENIEVRDLYNLFIDPLDKMSASKKKEIRESRKLEFLYNLDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAY*HLRLIKGWVGKGPAILASIGFFV 909
            DN  N+ SN +F FLL   + YW +L F  RV  + K  +I+S  A  +LF  L SRWI +GYFPLSNLYESLLFL+  +L +Y +IE+KTKSK+ GAIL+P+ L I GFA+LTL  +M+KAS LVPALQSNWLMMHVS+MMLSYA+LI+GSL+ ILFL+I  S SKD ++                     LYN+ ++  +    S   E  E  KL+ L+++DNW YR I LGFPFLT+GIIAG VWANEAWGSYWSWDPKETWALITW+IFA Y H R+ KGW GK  AIL +IGFFV
Sbjct:    4 DNIQNYLSNIVFAFLLFGMIIYWVNLLFLPRVKSFSKVGRISSIFANLLLFFILCSRWIISGYFPLSNLYESLLFLTWTLLTIYLYIEFKTKSKLMGAILIPVALLINGFANLTLSADMQKASPLVPALQSNWLMMHVSMMMLSYAMLIMGSLLCILFLVI--SKSKDVDLQVLDK------------SYSPLYNVMVNYYEAKLFSPSDEFLELGKLKLLHSIDNWSYRIIGLGFPFLTVGIIAGGVWANEAWGSYWSWDPKETWALITWIIFATYLHSRITKGWEGKKTAILGTIGFFV 290          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172090.4444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FAP1_9PHAE2.290e-19793.40Cytochrome c biogenesis protein CcsA n=1 Tax=Desma... [more]
A0A8F0F862_9PHAE6.260e-12162.99Cytochrome c biogenesis protein CcsA n=1 Tax=Proto... [more]
A0A8E5XRE0_9PHAE1.880e-11962.17Cytochrome c biogenesis protein CcsA n=1 Tax=Ishig... [more]
A0A8F0F9V5_9PHAE1.320e-11761.61Cytochrome c biogenesis protein CcsA n=1 Tax=Chord... [more]
A0A2I4Q2E4_9PHAE3.000e-11759.93Cytochrome c biogenesis protein CcsA n=1 Tax=Dicty... [more]
A0A516ICR2_9PHAE5.010e-11562.30Cytochrome c biogenesis protein CcsA n=27 Tax=Lami... [more]
A0A7S6U9V9_9STRA9.080e-11256.33Cytochrome c biogenesis protein CcsA n=1 Tax=Schiz... [more]
A0A2R4QPY5_9PHAE4.160e-11057.32Cytochrome c biogenesis protein CcsA n=4 Tax=Fucac... [more]
A0A1L2F1W2_9PHAE1.460e-10556.00Cytochrome c biogenesis protein CcsA n=13 Tax=Sarg... [more]
A0A2U9NM76_9STRA1.210e-10457.14Cytochrome c biogenesis protein CcsA n=1 Tax=Probo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172090contigH-elongata_contig172090:443..1351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.5
Seed ortholog evalue1.1e-73
Seed eggNOG ortholog2880.D1J757
Preferred nameccsA
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0008150,GO:0008152,GO:0009536,GO:0015886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051181,GO:0051234,GO:0055114,GO:0071702,GO:0071705,GO:1901678
EggNOG free text desc.cytochrome complex assembly
EggNOG OGs2QU0T@2759,COG0755@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size909
Cds size840
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930002.292655-CDS-H-elongata_contig172090:442..12821622930002.292655-CDS-H-elongata_contig172090:442..1282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172090 443..1282 +
1691679241.4250553-CDS-H-elongata_contig172090:442..12821691679241.4250553-CDS-H-elongata_contig172090:442..1282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172090 443..1282 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930002.3103223-UTR-H-elongata_contig172090:1282..13511622930002.3103223-UTR-H-elongata_contig172090:1282..1351Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172090 1283..1351 +
1691679241.4447002-UTR-H-elongata_contig172090:1282..13511691679241.4447002-UTR-H-elongata_contig172090:1282..1351Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172090 1283..1351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172090.4444.1prot_H-elongata_contig172090.4444.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172090 443..1282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172090.4444.1

>prot_H-elongata_contig172090.4444.1 ID=prot_H-elongata_contig172090.4444.1|Name=mRNA_H-elongata_contig172090.4444.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=280bp
MLFDNYCNFFSNSIFIFLLIATVFYWFSLRFTRVDFYYKFAKINSRVATA
ILFIFLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGA
ILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAIL
IVGSLVSILFLIIFLSLSKDSEISFTSYSSYEEYARAENIEVRDLYNLFI
DPLDKMSASKKKEIRESRKLEFLYNLDNWGYRTISLGFPFLTIGIIAGAV
WANEAWGSYWSWDPKETWALITWLIFAAY*
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mRNA from alignment at H-elongata_contig172090:443..1351+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172090.4444.1 ID=mRNA_H-elongata_contig172090.4444.1|Name=mRNA_H-elongata_contig172090.4444.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=909bp|location=Sequence derived from alignment at H-elongata_contig172090:443..1351+ (Himanthalia elongata Himel1 dioecious)
ATGTTATTTGATAACTACTGTAATTTTTTTAGCAATAGTATTTTTATTTT TTTACTTATTGCTACAGTTTTTTATTGGTTTAGTTTAAGATTTACAAGAG TAGATTTTTATTATAAATTTGCAAAAATTAATTCACGAGTTGCAACTGCT ATTCTTTTTATTTTTTTACTAAGCCGTTGGATTCAAAATGGTTATTTTCC TTTAAGTAATTTGTATGAATCCTTATTATTCTTATCTTGCATAATTTTAT TTGTTTATCAATTTATAGAGTATAAAACTAAGAGTAAAATATTTGGAGCT ATTCTTTTACCTTTAGTTCTATTTATTACAGGTTTTGCTGATCTAACACT GCCCTTAGAAATGAGAAAAGCAAGCGCTTTAGTTCCAGCCTTACAATCAA ATTGGCTAATGATGCATGTTAGTCTAATGATGTTAAGTTATGCTATATTG ATAGTTGGTTCGTTAGTTTCAATTTTATTTTTAATAATTTTTCTCTCGCT ATCAAAAGATTCAGAAATAAGTTTTACAAGTTATAGTAGTTATGAAGAAT ATGCAAGAGCTGAAAATATAGAGGTTCGAGACCTTTATAACTTATTTATT GACCCACTTGATAAAATGAGTGCTAGCAAAAAAAAAGAGATAAGAGAAAG TCGTAAATTAGAATTTTTATATAACCTTGATAATTGGGGCTATCGAACTA TAAGTTTAGGCTTTCCTTTTTTGACAATTGGGATTATTGCTGGAGCTGTT TGGGCAAATGAAGCATGGGGATCATATTGGAGTTGGGATCCTAAAGAAAC TTGGGCTTTAATAACATGGCTAATTTTTGCAGCTTATTGACATTTAAGAT TAATAAAAGGTTGGGTTGGTAAAGGTCCAGCTATATTAGCAAGTATAGGG TTTTTTGTA
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Coding sequence (CDS) from alignment at H-elongata_contig172090:443..1351+

>mRNA_H-elongata_contig172090.4444.1 ID=mRNA_H-elongata_contig172090.4444.1|Name=mRNA_H-elongata_contig172090.4444.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1680bp|location=Sequence derived from alignment at H-elongata_contig172090:443..1351+ (Himanthalia elongata Himel1 dioecious)
ATGTTATTTGATAACTACTGTAATTTTTTTAGCAATAGTATTTTTATTTT
TTTACTTATTGCTACAGTTTTTTATTGGTTTAGTTTAAGATTTACAAGAG
TAGATTTTTATTATAAATTTGCAAAAATTAATTCACGAGTTGCAACTGCT
ATTCTTTTTATTTTTTTACTAAGCCGTTGGATTCAAAATGGTTATTTTCC
TTTAAGTAATTTGTATGAATCCTTATTATTCTTATCTTGCATAATTTTAT
TTGTTTATCAATTTATAGAGTATAAAACTAAGAGTAAAATATTTGGAGCT
ATTCTTTTACCTTTAGTTCTATTTATTACAGGTTTTGCTGATCTAACACT
GCCCTTAGAAATGAGAAAAGCAAGCGCTTTAGTTCCAGCCTTACAATCAA
ATTGGCTAATGATGCATGTTAGTCTAATGATGTTAAGTTATGCTATATTG
ATAGTTGGTTCGTTAGTTTCAATTTTATTTTTAATAATTTTTCTCTCGCT
ATCAAAAGATTCAGAAATAAGTTTTACAAGTTATAGTAGTTATGAAGAAT
ATGCAAGAGCTGAAAATATAGAGGTTCGAGACCTTTATAACTTATTTATT
GACCCACTTGATAAAATGAGTGCTAGCAAAAAAAAAGAGATAAGAGAAAG
TCGTAAATTAGAATTTTTATATAACCTTGATAATTGGGGCTATCGAACTA
TAAGTTTAGGCTTTCCTTTTTTGACAATTGGGATTATTGCTGGAGCTGTT
TGGGCAAATGAAGCATGGGGATCATATTGGAGTTGGGATCCTAAAGAAAC
TTGGGCTTTAATAACATGGCTAATTTTTGCAGCTTATTGAATGTTATTTG
ATAACTACTGTAATTTTTTTAGCAATAGTATTTTTATTTTTTTACTTATT
GCTACAGTTTTTTATTGGTTTAGTTTAAGATTTACAAGAGTAGATTTTTA
TTATAAATTTGCAAAAATTAATTCACGAGTTGCAACTGCTATTCTTTTTA
TTTTTTTACTAAGCCGTTGGATTCAAAATGGTTATTTTCCTTTAAGTAAT
TTGTATGAATCCTTATTATTCTTATCTTGCATAATTTTATTTGTTTATCA
ATTTATAGAGTATAAAACTAAGAGTAAAATATTTGGAGCTATTCTTTTAC
CTTTAGTTCTATTTATTACAGGTTTTGCTGATCTAACACTGCCCTTAGAA
ATGAGAAAAGCAAGCGCTTTAGTTCCAGCCTTACAATCAAATTGGCTAAT
GATGCATGTTAGTCTAATGATGTTAAGTTATGCTATATTGATAGTTGGTT
CGTTAGTTTCAATTTTATTTTTAATAATTTTTCTCTCGCTATCAAAAGAT
TCAGAAATAAGTTTTACAAGTTATAGTAGTTATGAAGAATATGCAAGAGC
TGAAAATATAGAGGTTCGAGACCTTTATAACTTATTTATTGACCCACTTG
ATAAAATGAGTGCTAGCAAAAAAAAAGAGATAAGAGAAAGTCGTAAATTA
GAATTTTTATATAACCTTGATAATTGGGGCTATCGAACTATAAGTTTAGG
CTTTCCTTTTTTGACAATTGGGATTATTGCTGGAGCTGTTTGGGCAAATG
AAGCATGGGGATCATATTGGAGTTGGGATCCTAAAGAAACTTGGGCTTTA
ATAACATGGCTAATTTTTGCAGCTTATTGA
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