mRNA_H-elongata_contig172070.4441.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172070.4441.1
Unique NamemRNA_H-elongata_contig172070.4441.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig172070.4441.1 vs. uniprot
Match: UPI0009E5F5BB (pathogen-related protein-like isoform X2 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5F5BB)

HSP 1 Score: 70.5 bits (171), Expect = 3.420e-13
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   49 RDYVPMDGVEWRYGSPPDYEKVNTAYFEGRTKTHPHGSLESIVQQAVKNWEVESHH 216
            R Y+   G++WR G P DY KVN AY EGRT+TH  GSLE IV+  VK WE+E+ H
Sbjct:   11 RQYMDEPGIQWREGKP-DYTKVNKAYLEGRTRTHNEGSLEKIVEDLVKTWEMEAFH 65          
BLAST of mRNA_H-elongata_contig172070.4441.1 vs. uniprot
Match: UPI001E1E12C9 (pathogen-related protein-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E12C9)

HSP 1 Score: 70.1 bits (170), Expect = 5.710e-13
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   37 GEII--RDYVPMDGVEWRYGSPPDYEKVNTAYFEGRTKTHPHGSLESIVQQAVKNWEVESHH 216
            GEI+  R Y+    + WRYGS PDY KVN  +   RTK H  GSLE IV+  VK WE+ES H
Sbjct:    5 GEILPKRAYMDNPDINWRYGSKPDYRKVNEIFMRERTKVHTEGSLEKIVEDLVKTWEMESSH 66          
BLAST of mRNA_H-elongata_contig172070.4441.1 vs. uniprot
Match: K7LWH8_SOYBN (Uncharacterized protein n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=K7LWH8_SOYBN)

HSP 1 Score: 65.5 bits (158), Expect = 1.790e-12
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   67 DGVEWRYGSPPDYEKVNTAYFEGRTKTHPHGSLESIVQQAVKNWEVESHH 216
            D ++WR+G PP YE VN  + E RTK  P GSLE IVQ A+K+WE+ S H
Sbjct:   15 DNIQWRHGGPPTYEAVNKLFEERRTKEWPEGSLEEIVQNAIKSWEIWSFH 64          
BLAST of mRNA_H-elongata_contig172070.4441.1 vs. uniprot
Match: A0A7N2MAL1_QUELO (Uncharacterized protein n=3 Tax=Fagaceae TaxID=3503 RepID=A0A7N2MAL1_QUELO)

HSP 1 Score: 68.6 bits (166), Expect = 2.880e-12
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   55 YVPMDGVEWRYGSPPDYEKVNTAYFEGRTKTHPHGSLESIVQQAVKNWEVESHH 216
            Y   D +EWR+G PP Y+ VN  + +GRTK  P GSLE IVQ AVK+WE+E  H
Sbjct:   21 YDEADDIEWRHGGPPTYDDVNRLFEDGRTKEWPKGSLEEIVQNAVKSWEMELSH 74          
BLAST of mRNA_H-elongata_contig172070.4441.1 vs. uniprot
Match: A0A812USP2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812USP2_9DINO)

HSP 1 Score: 69.3 bits (168), Expect = 3.390e-12
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   40 EIIRDYVPMDGVEWRYGSPPDYEKVNTAYFEGRTKTHPHGSLESIVQQAVKNWEVESHH 216
            E  R ++  +G++WRYG  PDY   N  Y +G+TK HP GSLE IV+  VK WE+E  H
Sbjct:  109 EPERAHMDEEGIKWRYGGKPDYSLTNLLYLKGKTKNHPEGSLELIVENLVKTWEMERSH 167          
BLAST of mRNA_H-elongata_contig172070.4441.1 vs. uniprot
Match: A0A812LD63_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812LD63_9DINO)

HSP 1 Score: 69.3 bits (168), Expect = 3.530e-12
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   40 EIIRDYVPMDGVEWRYGSPPDYEKVNTAYFEGRTKTHPHGSLESIVQQAVKNWEVESHH 216
            E  R ++  +G++WRYG  PDY   N  Y +G+TK HP GSLE IV+  VK WE+E  H
Sbjct:  116 EPERAHMDEEGIKWRYGGKPDYSLTNLLYLKGKTKNHPEGSLELIVENLVKTWEMERSH 174          
BLAST of mRNA_H-elongata_contig172070.4441.1 vs. uniprot
Match: UPI001E1E0B45 (pathogen-related protein-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0B45)

HSP 1 Score: 67.0 bits (162), Expect = 8.460e-12
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   49 RDYVPMDGVEWRYGSPPDYEKVNTAYFEGRTKTHPHGSLESIVQQAVKNWEVESHH 216
            R ++ +  ++WR+GS PDY  VN  +  GRTK H  GSLE IV+  VK WE+ES H
Sbjct:   11 RAFMDIPDIKWRHGSKPDYSTVNEVFMRGRTKVHNEGSLEKIVEDLVKTWEMESSH 66          
BLAST of mRNA_H-elongata_contig172070.4441.1 vs. uniprot
Match: A0A2P5DQW0_PARAD (NTF2-like domain containing protein n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5DQW0_PARAD)

HSP 1 Score: 67.4 bits (163), Expect = 8.620e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   40 EIIRD----YVPMDGVEWRYGSPPDYEKVNTAYFEGRTKTHPHGSLESIVQQAVKNWEVESHH 216
            +++RD    ++  +  EWR+G+PP Y+ VN  + +GRTK  P GSLE IVQ AVK+WE+E  H
Sbjct:   12 KVVRDKYRSFLDDENTEWRHGAPPTYDSVNHLFEQGRTKEWPKGSLEEIVQNAVKSWEMELSH 74          
BLAST of mRNA_H-elongata_contig172070.4441.1 vs. uniprot
Match: A0A8K0IU21_COCNU (Putative Pathogen-related protein n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0IU21_COCNU)

HSP 1 Score: 66.6 bits (161), Expect = 1.010e-11
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   37 GEIIRDYVPMDG--VEWRYGSPPDYEKVNTAYFEGRTKTHPHGSLESIVQQAVKNWEVESHH 216
            G+  R Y+  +G    WR+GSPP Y+ VN  + EGRTK  P GSLE +VQ A+K WE+E  H
Sbjct:   13 GDKYRSYLGGEGDDTHWRHGSPPTYDIVNKLFEEGRTKVWPKGSLEEVVQNAIKTWEMELSH 74          
BLAST of mRNA_H-elongata_contig172070.4441.1 vs. uniprot
Match: C6TCW2_SOYBN (Uncharacterized protein n=1 Tax=Glycine max TaxID=3847 RepID=C6TCW2_SOYBN)

HSP 1 Score: 64.7 bits (156), Expect = 1.130e-11
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   67 DGVEWRYGSPPDYEKVNTAYFEGRTKTHPHGSLESIVQQAVKNWEVESHH 216
            D V+WR+G PP Y+ VN  + EGRTK    GSLE IVQ A+K+WE+E  H
Sbjct:   15 DNVQWRHGGPPTYDAVNKLFGEGRTKEWTEGSLEEIVQNAIKSWEMELSH 64          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172070.4441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0009E5F5BB3.420e-1357.14pathogen-related protein-like isoform X2 n=2 Tax=O... [more]
UPI001E1E12C95.710e-1353.23pathogen-related protein-like n=1 Tax=Mercenaria m... [more]
K7LWH8_SOYBN1.790e-1256.00Uncharacterized protein n=2 Tax=Glycine subgen. So... [more]
A0A7N2MAL1_QUELO2.880e-1255.56Uncharacterized protein n=3 Tax=Fagaceae TaxID=350... [more]
A0A812USP2_9DINO3.390e-1249.15Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A812LD63_9DINO3.530e-1249.15Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
UPI001E1E0B458.460e-1250.00pathogen-related protein-like n=1 Tax=Mercenaria m... [more]
A0A2P5DQW0_PARAD8.620e-1247.62NTF2-like domain containing protein n=2 Tax=Cannab... [more]
A0A8K0IU21_COCNU1.010e-1150.00Putative Pathogen-related protein n=1 Tax=Cocos nu... [more]
C6TCW2_SOYBN1.130e-1156.00Uncharacterized protein n=1 Tax=Glycine max TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172070contigH-elongata_contig172070:639..857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.6
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog71139.XP_010062148.1
EggNOG free text desc.Pathogen-related protein-like
EggNOG OGs28JGX@1,2QRW1@2759,37SIG@33090,3GCR9@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930002.0814824-CDS-H-elongata_contig172070:638..8571622930002.0814824-CDS-H-elongata_contig172070:638..857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172070 639..857 -
1691679241.3699107-CDS-H-elongata_contig172070:638..8571691679241.3699107-CDS-H-elongata_contig172070:638..857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172070 639..857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172070.4441.1prot_H-elongata_contig172070.4441.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172070 639..857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172070.4441.1

>prot_H-elongata_contig172070.4441.1 ID=prot_H-elongata_contig172070.4441.1|Name=mRNA_H-elongata_contig172070.4441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MNGLSDSSKGRDGEIIRDYVPMDGVEWRYGSPPDYEKVNTAYFEGRTKTH
PHGSLESIVQQAVKNWEVESHHI
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mRNA from alignment at H-elongata_contig172070:639..857-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172070.4441.1 ID=mRNA_H-elongata_contig172070.4441.1|Name=mRNA_H-elongata_contig172070.4441.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig172070:639..857- (Himanthalia elongata Himel1 dioecious)
ATGAATGGCCTTTCAGACTCGAGCAAGGGGCGCGACGGAGAAATAATCAG GGACTACGTACCCATGGACGGTGTCGAATGGCGGTATGGATCACCGCCAG ACTACGAAAAGGTGAACACTGCCTACTTTGAGGGCCGAACCAAGACGCAC CCCCATGGTTCTCTTGAGAGCATTGTGCAACAGGCGGTGAAAAACTGGGA GGTGGAGTCTCATCACATC
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Coding sequence (CDS) from alignment at H-elongata_contig172070:639..857-

>mRNA_H-elongata_contig172070.4441.1 ID=mRNA_H-elongata_contig172070.4441.1|Name=mRNA_H-elongata_contig172070.4441.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig172070:639..857- (Himanthalia elongata Himel1 dioecious)
ATGAATGGCCTTTCAGACTCGAGCAAGGGGCGCGACGGAGAAATAATCAG
GGACTACGTACCCATGGACGGTGTCGAATGGCGGTATGGATCACCGCCAG
ACTACGAAAAGGTGAACACTGCCTACTTTGAGGGCCGAACCAAGACGCAC
CCCCATGGTTCTCTTGAGAGCATTGTGCAACAGGCGGTGAAAAACTGGGA
GGTGGAGTCTCATCACATCATGAATGGCCTTTCAGACTCGAGCAAGGGGC
GCGACGGAGAAATAATCAGGGACTACGTACCCATGGACGGTGTCGAATGG
CGGTATGGATCACCGCCAGACTACGAAAAGGTGAACACTGCCTACTTTGA
GGGCCGAACCAAGACGCACCCCCATGGTTCTCTTGAGAGCATTGTGCAAC
AGGCGGTGAAAAACTGGGAGGTGGAGTCTCATCACATC
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