mRNA_H-elongata_contig172038.4439.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172038.4439.1
Unique NamemRNA_H-elongata_contig172038.4439.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig172038.4439.1 vs. uniprot
Match: A0A6H5K3I4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I4_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.400e-29
Identity = 55/112 (49.11%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    4 FVRKLETRVRKGDEVGFYKHLKTMNLEGKQDRSSAYIKDEDGILLRDAVLIRKRWARWFQTLLSTKSPVLEPNITEGLDQWSENTPLAIQPTMQELTGAICSLANEKAVGSD 339
            +VR+LE + R+GD+ GFY+HLK +++EGK+  +S  IKDEDG +LRD  L R+RWARWF  LL+TKSP ++ + T+ + QW    PL   P++ E+  A+  +AN KAVG D
Sbjct:  107 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPD 218
[Close]
BLAST of mRNA_H-elongata_contig172038.4439.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.190e-28
Identity = 53/112 (47.32%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    4 FVRKLETRVRKGDEVGFYKHLKTMNLEGKQDRSSAYIKDEDGILLRDAVLIRKRWARWFQTLLSTKSPVLEPNITEGLDQWSENTPLAIQPTMQELTGAICSLANEKAVGSD 339
            +VR+LE + R+GD+ GFY+HLK +++EGK+  +S  IKDEDG +LRD   IR+RWARWF  LL+TKSP ++ +  + + +W    PL   P+++E+  A+  +AN KAVG D
Sbjct:   46 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLREVEEAVREMANRKAVGPD 157
[Close]
BLAST of mRNA_H-elongata_contig172038.4439.1 vs. uniprot
Match: A0A6H5K397_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K397_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.720e-28
Identity = 53/112 (47.32%), Postives = 78/112 (69.64%), Query Frame = 1 
Query:    4 FVRKLETRVRKGDEVGFYKHLKTMNLEGKQDRSSAYIKDEDGILLRDAVLIRKRWARWFQTLLSTKSPVLEPNITEGLDQWSENTPLAIQPTMQELTGAICSLANEKAVGSD 339
            +VR+LE + R+GD+ GFY+HLK +++EGK+  +S  IKDEDG +LRD   IR+RWARWF  LL+TKSP ++ +  + + +W    PL   P++ E+  A+  +AN KAVG D
Sbjct:   82 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPD 193
[Close]
BLAST of mRNA_H-elongata_contig172038.4439.1 vs. uniprot
Match: A0A6H5KJR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR4_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 6.680e-28
Identity = 52/112 (46.43%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:    4 FVRKLETRVRKGDEVGFYKHLKTMNLEGKQDRSSAYIKDEDGILLRDAVLIRKRWARWFQTLLSTKSPVLEPNITEGLDQWSENTPLAIQPTMQELTGAICSLANEKAVGSD 339
            +VR+LE + R+GD+ GFY+HLK +++EGK+  +S   KDEDG ++RD   IR+RWARWF  LL+TKSP ++ +  + + QW    PL   P++ E+  A+  +AN KAVG D
Sbjct:   24 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNTKDEDGKVIRDPTFIRQRWARWFHXLLNTKSPTIDLHAADKVKQWPTYVPLDDIPSLPEVEEAVREMANRKAVGPD 135
[Close]
BLAST of mRNA_H-elongata_contig172038.4439.1 vs. uniprot
Match: A0A6H5JVM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM9_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.640e-28
Identity = 53/112 (47.32%), Postives = 78/112 (69.64%), Query Frame = 1 
Query:    4 FVRKLETRVRKGDEVGFYKHLKTMNLEGKQDRSSAYIKDEDGILLRDAVLIRKRWARWFQTLLSTKSPVLEPNITEGLDQWSENTPLAIQPTMQELTGAICSLANEKAVGSD 339
            +VR+LE + R+GD+ GFY+HLK +++EGK+  +S  IKDEDG +LRD   IR+RWARWF  LL+TKSP ++ +  + + +W    PL   P++ E+  A+  +AN KAVG D
Sbjct:   24 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGLD 135
[Close]
BLAST of mRNA_H-elongata_contig172038.4439.1 vs. uniprot
Match: A0A6H5L7I2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 9.480e-28
Identity = 53/112 (47.32%), Postives = 78/112 (69.64%), Query Frame = 1 
Query:    4 FVRKLETRVRKGDEVGFYKHLKTMNLEGKQDRSSAYIKDEDGILLRDAVLIRKRWARWFQTLLSTKSPVLEPNITEGLDQWSENTPLAIQPTMQELTGAICSLANEKAVGSD 339
            +VR+LE + R+GD+ GFY+HLK +++EGK+  +S  IKDEDG +LRD   IR+RWARWF  LL+TKSP ++ +  + + +W    PL   P++ E+  A+  +AN KAVG D
Sbjct:   24 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPD 135
[Close]
BLAST of mRNA_H-elongata_contig172038.4439.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.750e-27
Identity = 55/112 (49.11%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    4 FVRKLETRVRKGDEVGFYKHLKTMNLEGKQDRSSAYIKDEDGILLRDAVLIRKRWARWFQTLLSTKSPVLEPNITEGLDQWSENTPLAIQPTMQELTGAICSLANEKAVGSD 339
            +VR+LE + R+GD+ GFY+HLK +++EGK+  +S  IKDEDG +LRD  L R+RWARWF  LL+TKSP ++ + T+ + QW    PL   P++ E+  A+  +AN KAVG D
Sbjct:  257 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPD 368
[Close]
BLAST of mRNA_H-elongata_contig172038.4439.1 vs. uniprot
Match: A0A6H5JUB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.770e-27
Identity = 55/112 (49.11%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    4 FVRKLETRVRKGDEVGFYKHLKTMNLEGKQDRSSAYIKDEDGILLRDAVLIRKRWARWFQTLLSTKSPVLEPNITEGLDQWSENTPLAIQPTMQELTGAICSLANEKAVGSD 339
            +VR+LE + R+GD+ GFY+HLK +++EGK+  +S  IKDEDG +LRD  L R+RWARWF  LL+TKSP ++ + T+ + QW    PL   P++ E+  A+  +AN KAVG D
Sbjct:   42 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPD 153
[Close]
BLAST of mRNA_H-elongata_contig172038.4439.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.780e-27
Identity = 55/112 (49.11%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    4 FVRKLETRVRKGDEVGFYKHLKTMNLEGKQDRSSAYIKDEDGILLRDAVLIRKRWARWFQTLLSTKSPVLEPNITEGLDQWSENTPLAIQPTMQELTGAICSLANEKAVGSD 339
            +VR+LE + R+GD+ GFY+HLK +++EGK+  +S  IKDEDG +LRD  L R+RWARWF  LL+TKSP ++ + T+ + QW    PL   P++ E+  A+  +AN KAVG D
Sbjct:  395 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPD 506
[Close]
BLAST of mRNA_H-elongata_contig172038.4439.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.800e-27
Identity = 55/112 (49.11%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    4 FVRKLETRVRKGDEVGFYKHLKTMNLEGKQDRSSAYIKDEDGILLRDAVLIRKRWARWFQTLLSTKSPVLEPNITEGLDQWSENTPLAIQPTMQELTGAICSLANEKAVGSD 339
            +VR+LE + R+GD+ GFY+HLK +++EGK+  +S  IKDEDG +LRD  L R+RWARWF  LL+TKSP ++ + T+ + QW    PL   P++ E+  A+  +AN KAVG D
Sbjct:  507 YVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPD 618
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172038.4439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3I4_9PHAE2.400e-2949.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L012_9PHAE1.190e-2847.32Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K397_9PHAE1.720e-2847.32Uncharacterized protein (Fragment) n=3 Tax=Ectocar... [more]
A0A6H5KJR4_9PHAE6.680e-2846.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVM9_9PHAE7.640e-2847.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7I2_9PHAE9.480e-2847.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K8Z5_9PHAE3.750e-2749.11Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUB0_9PHAE3.770e-2749.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC90_9PHAE3.780e-2749.11Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE3.800e-2749.11Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172038contigH-elongata_contig172038:952..1299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930001.9748416-CDS-H-elongata_contig172038:951..12991622930001.9748416-CDS-H-elongata_contig172038:951..1299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172038 952..1299 +
1691679241.3523703-CDS-H-elongata_contig172038:951..12991691679241.3523703-CDS-H-elongata_contig172038:951..1299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172038 952..1299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172038.4439.1prot_H-elongata_contig172038.4439.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172038 952..1299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172038.4439.1

>prot_H-elongata_contig172038.4439.1 ID=prot_H-elongata_contig172038.4439.1|Name=mRNA_H-elongata_contig172038.4439.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
TFVRKLETRVRKGDEVGFYKHLKTMNLEGKQDRSSAYIKDEDGILLRDAV
LIRKRWARWFQTLLSTKSPVLEPNITEGLDQWSENTPLAIQPTMQELTGA
ICSLANEKAVGSDGVS
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mRNA from alignment at H-elongata_contig172038:952..1299+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172038.4439.1 ID=mRNA_H-elongata_contig172038.4439.1|Name=mRNA_H-elongata_contig172038.4439.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig172038:952..1299+ (Himanthalia elongata Himel1 dioecious)
ACCTTCGTCCGCAAACTTGAAACACGCGTTCGAAAAGGCGACGAGGTCGG
ATTCTACAAGCATCTGAAGACGATGAATTTGGAAGGGAAGCAAGACCGCA
GCTCGGCGTACATCAAAGACGAGGATGGAATACTCCTGAGGGACGCTGTA
CTTATCCGCAAACGATGGGCCCGTTGGTTCCAAACCCTCTTGAGCACCAA
ATCGCCGGTTCTCGAGCCGAACATCACTGAAGGCCTCGACCAGTGGTCGG
AGAACACGCCGCTGGCAATTCAGCCCACGATGCAGGAGTTGACAGGCGCC
ATCTGCTCGTTAGCGAACGAAAAGGCTGTTGGATCGGACGGAGTCTCA
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Coding sequence (CDS) from alignment at H-elongata_contig172038:952..1299+

>mRNA_H-elongata_contig172038.4439.1 ID=mRNA_H-elongata_contig172038.4439.1|Name=mRNA_H-elongata_contig172038.4439.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig172038:952..1299+ (Himanthalia elongata Himel1 dioecious)
ACCTTCGTCCGCAAACTTGAAACACGCGTTCGAAAAGGCGACGAGGTCGG
ATTCTACAAGCATCTGAAGACGATGAATTTGGAAGGGAAGCAAGACCGCA
GCTCGGCGTACATCAAAGACGAGGATGGAATACTCCTGAGGGACGCTGTA
CTTATCCGCAAACGATGGGCCCGTTGGTTCCAAACCCTCTTGAGCACCAA
ATCGCCGGTTCTCGAGCCGAACATCACTGAAGGCCTCGACCAGTGGTCGG
AGAACACGCCGCTGGCAATTCAGCCCACGATGCAGGAGTTGACAGGCGCC
ATCTGCTCGTTAGCGAACGAAAAGGCTGTTGGATCGGACGGAGTCTCAAC
CTTCGTCCGCAAACTTGAAACACGCGTTCGAAAAGGCGACGAGGTCGGAT
TCTACAAGCATCTGAAGACGATGAATTTGGAAGGGAAGCAAGACCGCAGC
TCGGCGTACATCAAAGACGAGGATGGAATACTCCTGAGGGACGCTGTACT
TATCCGCAAACGATGGGCCCGTTGGTTCCAAACCCTCTTGAGCACCAAAT
CGCCGGTTCTCGAGCCGAACATCACTGAAGGCCTCGACCAGTGGTCGGAG
AACACGCCGCTGGCAATTCAGCCCACGATGCAGGAGTTGACAGGCGCCAT
CTGCTCGTTAGCGAACGAAAAGGCTGTTGGATCGGACGGAGTCTCA
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