mRNA_H-elongata_contig17203.4436.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17203.4436.1
Unique NamemRNA_H-elongata_contig17203.4436.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17203.4436.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.500e-10
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:   67 AAGDERCKRLLRRCFSELLSEKNDDVRSHCARLWSVLLEALACNTDAAATASAELATACLSVLFAPPSIP 276
            AA   RC+RLL RCF  LLSE++D VR H ARLWS LL+ L         A A L  +CL +LFAPP+ P
Sbjct:  636 AAAATRCERLLLRCFQALLSERDDGVREHSARLWSELLKGLGRADGHRRAAHASLMASCLGILFAPPATP 705
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BLAST of mRNA_H-elongata_contig17203.4436.1 vs. uniprot
Match: A0A6H5J7D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D4_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.230e-8
Identity = 33/61 (54.10%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   85 CKRLLRRCFSELLSEKNDDVRSHCARLWSVLLEALACNTDAAATASAELATACLSVLFAPP 267
            C+RLL RCF  LLSE++D VR H ARLWS LL+ L         A A L  +CL VLF PP
Sbjct:  263 CERLLLRCFQALLSERDDGVREHSARLWSELLKGLGRADGHRGAAHASLMASCLGVLFTPP 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17203.4436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBB5_ECTSI2.500e-1052.86Essential abundant protein involved in regulation ... [more]
A0A6H5J7D4_9PHAE2.230e-854.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17203contigH-elongata_contig17203:1079..1722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue2.2e-09
Seed eggNOG ortholog2880.D8LBB5
KEGG koko:K15192
EggNOG free text desc.helicase activity
EggNOG OGsKOG0392@1,KOG0392@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930001.8621678-CDS-H-elongata_contig17203:1078..12721622930001.8621678-CDS-H-elongata_contig17203:1078..1272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17203 1079..1272 +
1691679241.3180008-CDS-H-elongata_contig17203:1078..12721691679241.3180008-CDS-H-elongata_contig17203:1078..1272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17203 1079..1272 +
1622930001.8776278-CDS-H-elongata_contig17203:1469..17221622930001.8776278-CDS-H-elongata_contig17203:1469..1722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17203 1470..1722 +
1691679241.3297646-CDS-H-elongata_contig17203:1469..17221691679241.3297646-CDS-H-elongata_contig17203:1469..1722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17203 1470..1722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17203.4436.1prot_H-elongata_contig17203.4436.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17203 1079..1722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17203.4436.1

>prot_H-elongata_contig17203.4436.1 ID=prot_H-elongata_contig17203.4436.1|Name=mRNA_H-elongata_contig17203.4436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
RARLETSNIQRAESVVAIAAAAAAGDERCKRLLRRCFSELLSEKNDDVRS
HCARLWSVLLEALACNTDAAATASAELATACLSVLFAPPSIPTSHIGLKP
AAADGARSCSDAARSTNHAHQAGGSTTSKRRQQQEKREIVSAEEWVGKG
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mRNA from alignment at H-elongata_contig17203:1079..1722+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17203.4436.1 ID=mRNA_H-elongata_contig17203.4436.1|Name=mRNA_H-elongata_contig17203.4436.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=644bp|location=Sequence derived from alignment at H-elongata_contig17203:1079..1722+ (Himanthalia elongata Himel1 dioecious)
AGAGCTCGTCTCGAGACCTCGAATATACAACGGGCAGAATCCGTGGTCGC
GATCGCAGCAGCGGCGGCGGCGGGTGACGAGAGATGCAAACGGTTATTGC
GTCGGTGCTTTTCGGAACTCCTTTCCGAGAAGAATGACGACGTCAGGAGC
CACTGCGCTCGCCTGTGGAGTGTGCTGTTGGAGGCCCTCGCGTGGTGAGA
ATATTTGCGCCCAGTTCCTCAATCTGCAATGTTCTCGAGGCCATCCCCGT
CAATGATCGTCCTCTCCTGAAACACACGCTTGTTGTAGGAGTCGAGCTGA
ATCTTCCCATCACATCGATCCCACTGCTTTCGGTTCGTGCCGTCACCTCT
CACTTCCCCGCGGCCGTGTCCTGATCTCGATCTCCCTTCAGTAATACCGA
CGCCGCCGCCACGGCCTCCGCTGAGCTCGCAACTGCGTGCCTCAGCGTCC
TTTTCGCGCCGCCTTCCATACCCACTTCCCACATCGGGTTGAAGCCGGCT
GCCGCCGATGGTGCCCGTTCGTGCTCGGACGCGGCTCGATCGACAAATCA
TGCCCACCAAGCAGGGGGGTCTACCACAAGTAAGCGGCGGCAGCAGCAGG
AGAAGCGGGAGATAGTATCAGCGGAAGAATGGGTCGGAAAAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig17203:1079..1722+

>mRNA_H-elongata_contig17203.4436.1 ID=mRNA_H-elongata_contig17203.4436.1|Name=mRNA_H-elongata_contig17203.4436.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig17203:1079..1722+ (Himanthalia elongata Himel1 dioecious)
AGAGCTCGTCTCGAGACCTCGAATATACAACGGGCAGAATCCGTGGTCGC
GATCGCAGCAGCGGCGGCGGCGGGTGACGAGAGATGCAAACGGTTATTGC
GTCGGTGCTTTTCGGAACTCCTTTCCGAGAAGAATGACGACGTCAGGAGC
CACTGCGCTCGCCTGTGGAGTGTGCTGTTGGAGGCCCTCGCGTGAGAGCT
CGTCTCGAGACCTCGAATATACAACGGGCAGAATCCGTGGTCGCGATCGC
AGCAGCGGCGGCGGCGGGTGACGAGAGATGCAAACGGTTATTGCGTCGGT
GCTTTTCGGAACTCCTTTCCGAGAAGAATGACGACGTCAGGAGCCACTGC
GCTCGCCTGTGGAGTGTGCTGTTGGAGGCCCTCGCGTGTAATACCGACGC
CGCCGCCACGGCCTCCGCTGAGCTCGCAACTGCGTGCCTCAGCGTCCTTT
TCGCGCCGCCTTCCATACCCACTTCCCACATCGGGTTGAAGCCGGCTGCC
GCCGATGGTGCCCGTTCGTGCTCGGACGCGGCTCGATCGACAAATCATGC
CCACCAAGCAGGGGGGTCTACCACAAGTAAGCGGCGGCAGCAGCAGGAGA
AGCGGGAGATAGTATCAGCGGAAGAATGGGTCGGAAAAGGGTAATACCGA
CGCCGCCGCCACGGCCTCCGCTGAGCTCGCAACTGCGTGCCTCAGCGTCC
TTTTCGCGCCGCCTTCCATACCCACTTCCCACATCGGGTTGAAGCCGGCT
GCCGCCGATGGTGCCCGTTCGTGCTCGGACGCGGCTCGATCGACAAATCA
TGCCCACCAAGCAGGGGGGTCTACCACAAGTAAGCGGCGGCAGCAGCAGG
AGAAGCGGGAGATAGTATCAGCGGAAGAATGGGTCGGAAAAGGG
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