mRNA_H-elongata_contig17203.4435.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17203.4435.1
Unique NamemRNA_H-elongata_contig17203.4435.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17203.4435.1 vs. uniprot
Match: A0A6H5J7D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.630e-11
Identity = 38/74 (51.35%), Postives = 46/74 (62.16%), Query Frame = 3 
Query:   15 KDLAGLLETCCEGIDQRPGGAESLFGESHR-LRILVDLWGDGRARVRACAVRSLLALARGMVRARLETSNIQRA 233
            +DLA LLETCCE + +  G  +       R L  L+DLW D RA VRACAVRSLLALA+G+V A    +  Q A
Sbjct:  181 EDLADLLETCCEDVGRASGATDPFLSSGERRLNRLLDLWEDVRAGVRACAVRSLLALAQGIVGATRPVAKTQSA 254
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BLAST of mRNA_H-elongata_contig17203.4435.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 5.110e-11
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 3 
Query:   15 KDLAGLLETCCEGIDQRPGGAESLFGESHR-LRILVDLWGDGRARVRACAVRSLLALARGMV 197
            +DLA LLETCCE + +  G  +       R L  L+DLW D RA VRACAVRSLLALA+G+V
Sbjct:  559 EDLADLLETCCEDVGRASGATDPFLSSGERRLNRLLDLWEDVRAGVRACAVRSLLALAQGIV 620
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17203.4435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7D4_9PHAE2.630e-1151.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBB5_ECTSI5.110e-1156.45Essential abundant protein involved in regulation ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17203contigH-elongata_contig17203:457..1121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size242
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930001.7190506-CDS-H-elongata_contig17203:456..6551622930001.7190506-CDS-H-elongata_contig17203:456..655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17203 457..655 +
1691679241.265558-CDS-H-elongata_contig17203:456..6551691679241.265558-CDS-H-elongata_contig17203:456..655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17203 457..655 +
1622930001.7352931-CDS-H-elongata_contig17203:1080..11211622930001.7352931-CDS-H-elongata_contig17203:1080..1121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17203 1081..1121 +
1691679241.2772493-CDS-H-elongata_contig17203:1080..11211691679241.2772493-CDS-H-elongata_contig17203:1080..1121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17203 1081..1121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17203.4435.1prot_H-elongata_contig17203.4435.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17203 457..1121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17203.4435.1

>prot_H-elongata_contig17203.4435.1 ID=prot_H-elongata_contig17203.4435.1|Name=mRNA_H-elongata_contig17203.4435.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MVIGGRTSPVCSKPAARESTRDPEAPSLSSARAIDCASLLIFGETVVHAF
ALAQCDLCWRWREGWSELVSRPRIYNGQNP
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mRNA from alignment at H-elongata_contig17203:457..1121+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17203.4435.1 ID=mRNA_H-elongata_contig17203.4435.1|Name=mRNA_H-elongata_contig17203.4435.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=665bp|location=Sequence derived from alignment at H-elongata_contig17203:457..1121+ (Himanthalia elongata Himel1 dioecious)
ATGGTGATCGGTGGAAGGACCTCGCCGGTCTGCTCGAAACCTGCTGCGAG
GGAATCGACCAGAGACCCGGAGGCGCCGAGTCTCTCTTCGGCGAGAGCCA
TCGACTGCGCATCCTTGTTGATCTTTGGGGAGACGGTCGTGCACGCGTTC
GCGCTTGCGCAGTGCGATCTTTGCTGGCGCTGGCGCGAGGGATGGTCAGG
TAAGGTAAGCGCGACGAACTACTGTACAACCTCTTCCTTCTCCCCTTTTC
TACCTCTTACCTTCTATCGCCCATACGAAACGTCCCCGGTAGGCGACATA
CTTCACACAAGAAATACACAGAAGGCTAAAAACCCACGGGCATTTCCGAT
AGACGGAGTCGTGCTTATGGGTGGGAAATACACGCATGGCATCAACGGGA
TACCGGAATTATAACGGAATGTTAATCCAAAGCGAGGGTACCACCAACGA
TTGGCCAAAAATGCTAACCCACGAAGGATGGTTACTTGCGTCGCCTACTC
TTCGTTTCATGGGACGTGTTATTGTGTCTTTGTCCTGACTCTTGGACCAC
GCGACCCCAATTATTCTTACGCGGGGGCCCCTTGATCCCGGCTCCCGCGC
GACGTTTTCTGTTTTCTTTCTTAGAGCTCGTCTCGAGACCTCGAATATAC
AACGGGCAGAATCCG
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Coding sequence (CDS) from alignment at H-elongata_contig17203:457..1121+

>mRNA_H-elongata_contig17203.4435.1 ID=mRNA_H-elongata_contig17203.4435.1|Name=mRNA_H-elongata_contig17203.4435.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig17203:457..1121+ (Himanthalia elongata Himel1 dioecious)
ATGGTGATCGGTGGAAGGACCTCGCCGGTCTGCTCGAAACCTGCTGCGAG
GGAATCGACCAGAGACCCGGAGGCGCCGAGTCTCTCTTCGGCGAGAGCCA
TCGACTGCGCATCCTTGTTGATCTTTGGGGAGACGGTCGTGCACGCGTTC
GCGCTTGCGCAGTGCGATCTTTGCTGGCGCTGGCGCGAGGGATGGTCAGA
TGGTGATCGGTGGAAGGACCTCGCCGGTCTGCTCGAAACCTGCTGCGAGG
GAATCGACCAGAGACCCGGAGGCGCCGAGTCTCTCTTCGGCGAGAGCCAT
CGACTGCGCATCCTTGTTGATCTTTGGGGAGACGGTCGTGCACGCGTTCG
CGCTTGCGCAGTGCGATCTTTGCTGGCGCTGGCGCGAGGGATGGTCAGAG
CTCGTCTCGAGACCTCGAATATACAACGGGCAGAATCCGAGCTCGTCTCG
AGACCTCGAATATACAACGGGCAGAATCCG
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