mRNA_H-elongata_contig171906.4427.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171906.4427.1
Unique NamemRNA_H-elongata_contig171906.4427.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: A0A6H5JV32_9PHAE (Selenoprotein O n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV32_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.400e-59
Identity = 106/121 (87.60%), Postives = 111/121 (91.74%), Query Frame = 1
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPEAAAAGLEGGSSARYLAM 363
            +VLRSSIREFLCSEAMHFL IPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTR+APTFLRFGSFEIFKPRD RTGR GPS GNDALR+QML+YA  RFFP AAAAG +G S ARYLAM
Sbjct:  241 KVLRSSIREFLCSEAMHFLGIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRLAPTFLRFGSFEIFKPRDPRTGRDGPSAGNDALRLQMLEYAIGRFFPGAAAAGPKG-SKARYLAM 360          
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: A0A0S7K1U9_9TELE (Selenoprotein O (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7K1U9_9TELE)

HSP 1 Score: 149 bits (377), Expect = 5.250e-43
Identity = 71/104 (68.27%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPE 312
            +VLRSSIREFLCSEAM FL IPTTRA ++VTSD+KV RD++Y+GN   E+ S+V R+APTFLRFGSFEIFKP DE TGR GPS G + +R QMLDY    F+PE
Sbjct:   47 KVLRSSIREFLCSEAMFFLGIPTTRAGSVVTSDSKVVRDIYYSGNPCYEKCSVVLRIAPTFLRFGSFEIFKPADEFTGRQGPSYGREEIRGQMLDYVIEMFYPE 150          
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: A0A836CN66_9STRA (Selenoprotein O n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN66_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.810e-42
Identity = 84/122 (68.85%), Postives = 95/122 (77.87%), Query Frame = 1
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPEAAAAGL-EGGSSARYLAM 363
            +VLRSSIREFLCSEAMH+L IPTTRAA++VTSDT V+RD+FYTG+VI ERA+IV R+APTFLRFGSFEIFK  D  TGR GPS GN  L  +ML Y+   FFPEAAAA    GG  A  L M
Sbjct:  144 KVLRSSIREFLCSEAMHYLGIPTTRAASMVTSDTLVQRDLFYTGDVINERATIVLRIAPTFLRFGSFEIFKGTDPTTGRRGPSEGNVDLLKKMLHYSLSTFFPEAAAAAAGPGGLPAGTLMM 265          
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: A0A7S2V3H2_9STRA (Selenoprotein O n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3H2_9STRA)

HSP 1 Score: 157 bits (396), Expect = 2.400e-42
Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 1
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPEAAAA 324
            +VLRSSIREFLCSEA HFL IPTTRA  LVTS+TKV RDV+YTGN I E+ASIV R+AP+FLRFGSFEIFKP D  TGR GPS+GN AL  Q+LD+A  ++FPE AAA
Sbjct:  201 KVLRSSIREFLCSEANHFLGIPTTRAGTLVTSNTKVVRDVYYTGNPILEKASIVLRIAPSFLRFGSFEIFKPSDALTGRKGPSVGNTALLHQLLDFAIAQYFPEVAAA 308          
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: UPI001CF1ED27 (protein adenylyltransferase SelO, mitochondrial-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1ED27)

HSP 1 Score: 150 bits (380), Expect = 1.370e-41
Identity = 69/104 (66.35%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPE 312
            +VLRSSIREFLCSEAMHFL +PTTRA + VTSD+K+ RD+FY GN I+E+ ++V R+APTF+RFGSFEIFKP D  TGR GPS G   + VQ+LDY    FFPE
Sbjct:  195 KVLRSSIREFLCSEAMHFLGVPTTRAGSCVTSDSKIIRDIFYNGNAIREKCTVVLRIAPTFIRFGSFEIFKPVDSMTGRRGPSAGRTDIMVQLLDYTVNTFFPE 298          
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: A0A2B4RRY1_STYPI (Selenoprotein O n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4RRY1_STYPI)

HSP 1 Score: 152 bits (384), Expect = 8.710e-41
Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPEAAAAGLEGGSSARYLAM 363
            +VLRSSIREFLCSEAMHFL IPTTRA + VTSDT++ RD+FY GN I+ER +I+ R+APTF+RFGSFEIFKP D  TGR GPS G   + +Q+LDY  + FFP+     + G     YLA 
Sbjct:  156 KVLRSSIREFLCSEAMHFLGIPTTRAGSCVTSDTRITRDIFYDGNPIRERCTIILRIAPTFIRFGSFEIFKPTDPMTGRKGPSEGRTDILIQLLDYTVQTFFPQV----VTGDKEEAYLAF 272          
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: A0A4Z2HSQ3_9TELE (Selenoprotein O n=2 Tax=Cottales TaxID=1490021 RepID=A0A4Z2HSQ3_9TELE)

HSP 1 Score: 152 bits (384), Expect = 1.120e-40
Identity = 72/104 (69.23%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPE 312
            +VLRSSIREFLCSE MHFL +PTTRA ++VTSDTKV RDV+YTGN   ER S+V R+APTFLRFGSFEIFK  DE TGR GPS G D +R QM+DY    F+P+
Sbjct:  191 KVLRSSIREFLCSEVMHFLGVPTTRAGSVVTSDTKVVRDVYYTGNPRLERCSVVVRIAPTFLRFGSFEIFKRADEHTGRQGPSCGRDEIRGQMMDYVIEMFYPD 294          
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: UPI00168CB0C0 (protein adenylyltransferase SelO, mitochondrial isoform X2 n=1 Tax=Rousettus aegyptiacus TaxID=9407 RepID=UPI00168CB0C0)

HSP 1 Score: 150 bits (380), Expect = 1.180e-40
Identity = 76/108 (70.37%), Postives = 85/108 (78.70%), Query Frame = 1
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPEAAAA 324
            +VLRSSIREFLCSEAM  L IPTTRA A VTS + V RDVFY GN  QE  ++V RVAPTFLRFGSFEIFKP DERTGR+GPS+G + +RVQMLDY    F+PE  AA
Sbjct:  200 KVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVERDVFYDGNPKQEPCAVVLRVAPTFLRFGSFEIFKPADERTGRAGPSVGRNEIRVQMLDYVVGTFYPEIQAA 307          
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: G3PJI5_GASAC (Selenoprotein O n=1 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3PJI5_GASAC)

HSP 1 Score: 150 bits (379), Expect = 1.370e-40
Identity = 71/104 (68.27%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPE 312
            +VLRSSIREFLCSE MHFL +PTTRAA +VTSDT+V RDV+Y+GN   ER S V R+APTFLRFGSFEIFK  DE TGR GPS G D +R QM+DY    F+P+
Sbjct:  148 KVLRSSIREFLCSEVMHFLGVPTTRAACVVTSDTRVVRDVYYSGNPRNERCSAVVRIAPTFLRFGSFEIFKQADEHTGRQGPSYGRDEIRGQMMDYVIEMFYPD 251          
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: G3PJH3_GASAC (Selenoprotein O n=1 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3PJH3_GASAC)

HSP 1 Score: 150 bits (379), Expect = 1.850e-40
Identity = 71/104 (68.27%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPE 312
            +VLRSSIREFLCSE MHFL +PTTRAA +VTSDT+V RDV+Y+GN   ER S V R+APTFLRFGSFEIFK  DE TGR GPS G D +R QM+DY    F+P+
Sbjct:  160 KVLRSSIREFLCSEVMHFLGVPTTRAACVVTSDTRVVRDVYYSGNPRNERCSAVVRIAPTFLRFGSFEIFKQADEHTGRQGPSYGRDEIRGQMMDYVIEMFYPD 263          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV32_9PHAE1.400e-5987.60Selenoprotein O n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A0S7K1U9_9TELE5.250e-4368.27Selenoprotein O (Fragment) n=1 Tax=Poeciliopsis pr... [more]
A0A836CN66_9STRA1.810e-4268.85Selenoprotein O n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S2V3H2_9STRA2.400e-4273.15Selenoprotein O n=1 Tax=Fibrocapsa japonica TaxID=... [more]
UPI001CF1ED271.370e-4166.35protein adenylyltransferase SelO, mitochondrial-li... [more]
A0A2B4RRY1_STYPI8.710e-4160.33Selenoprotein O n=3 Tax=Pocilloporidae TaxID=46729... [more]
A0A4Z2HSQ3_9TELE1.120e-4069.23Selenoprotein O n=2 Tax=Cottales TaxID=1490021 Rep... [more]
UPI00168CB0C01.180e-4070.37protein adenylyltransferase SelO, mitochondrial is... [more]
G3PJI5_GASAC1.370e-4068.27Selenoprotein O n=1 Tax=Gasterosteus aculeatus Tax... [more]
G3PJH3_GASAC1.850e-4068.27Selenoprotein O n=1 Tax=Gasterosteus aculeatus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171906contigH-elongata_contig171906:280..1099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.3
Seed ortholog evalue1.6e-50
Seed eggNOG ortholog2880.D8LIY8
Preferred nameSELENOO
KEGG koko:K20865
KEGG Pathwayko04621,map04621
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Uncharacterized ACR, YdiU/UPF0061 family
EggNOG OGsCOG0397@1,KOG2542@2759
Ec32 ortholog descriptionselenoprotein O homolog, but not a selenoprotein itself
Ec32 orthologEc-20_002060.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.8471453-CDS-H-elongata_contig171906:279..4351622930000.8471453-CDS-H-elongata_contig171906:279..435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171906 280..435 +
1691679240.9308534-CDS-H-elongata_contig171906:279..4351691679240.9308534-CDS-H-elongata_contig171906:279..435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171906 280..435 +
1622930000.8713658-CDS-H-elongata_contig171906:889..10991622930000.8713658-CDS-H-elongata_contig171906:889..1099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171906 890..1099 +
1691679240.9404273-CDS-H-elongata_contig171906:889..10991691679240.9404273-CDS-H-elongata_contig171906:889..1099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171906 890..1099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171906.4427.1prot_H-elongata_contig171906.4427.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171906 280..1099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171906.4427.1

>prot_H-elongata_contig171906.4427.1 ID=prot_H-elongata_contig171906.4427.1|Name=mRNA_H-elongata_contig171906.4427.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQER
ASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARR
FFPEAAAAGLEGGSSARYLAM*
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mRNA from alignment at H-elongata_contig171906:280..1099+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171906.4427.1 ID=mRNA_H-elongata_contig171906.4427.1|Name=mRNA_H-elongata_contig171906.4427.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=820bp|location=Sequence derived from alignment at H-elongata_contig171906:280..1099+ (Himanthalia elongata Himel1 dioecious)
CAGGTCCTCCGCTCGTCGATCAGAGAGTTTCTGTGCTCGGAGGCGATGCA TTTTTTGAACATCCCGACCACGAGAGCGGCCGCTCTGGTTACGTCGGACA CGAAGGTTCGCCGCGATGTCTTCTACACGGGAAACGTCATCCAAGAGCGA GCTTCGGTGGGTCAAATTTTACACGCGTGTCTCTTGTAGGCGTTACGATA AGGGAGGCAGGGGAGGGAGAGTGAAACGGAGATGCCGTAAAAGAGGGCTA GGGGGGCGGGGGAGGGGGAGAAGTTCATGGACACTTCGAGGAAGGAAAAG AGGAACAGGCGATGGTGTTGACAGTCCCCAAAAATGCCAGGACAGATGGG TGGTGAAAACGCCAGAACACGATGTTGATGCTGCGCTATAGAGGCTGTGG TATAAGTTGGACAGGCTGACGAGGTCTTTCAGCCCTTGGAAATTTCGTTG GCTCAAACGTGACTTAGGCGACGCTGCTTGCACTAGAGAAGCCAGTAATT TATATATTTATTTATATTTGTATCATGCCAGCTGTGATAGCCTGCGCTAC TCGTACAAAACTGACATCCGGGTCGCCTCATTAACGCGACCCCCGCCCCC CGCGTTAAAGATCGTTACCAGGGTAGCCCCTACGTTCCTCCGGTTTGGGT CGTTCGAGATATTCAAGCCGAGAGATGAGCGCACCGGGCGGTCCGGCCCC AGCATGGGCAACGACGCCCTTCGCGTCCAGATGCTGGACTACGCAGCGCG TCGGTTTTTCCCAGAGGCTGCCGCGGCCGGACTCGAGGGGGGCTCGAGTG CACGGTATCTGGCGATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig171906:280..1099+

>mRNA_H-elongata_contig171906.4427.1 ID=mRNA_H-elongata_contig171906.4427.1|Name=mRNA_H-elongata_contig171906.4427.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig171906:280..1099+ (Himanthalia elongata Himel1 dioecious)
CAGGTCCTCCGCTCGTCGATCAGAGAGTTTCTGTGCTCGGAGGCGATGCA
TTTTTTGAACATCCCGACCACGAGAGCGGCCGCTCTGGTTACGTCGGACA
CGAAGGTTCGCCGCGATGTCTTCTACACGGGAAACGTCATCCAAGAGCGA
GCTTCGCAGGTCCTCCGCTCGTCGATCAGAGAGTTTCTGTGCTCGGAGGC
GATGCATTTTTTGAACATCCCGACCACGAGAGCGGCCGCTCTGGTTACGT
CGGACACGAAGGTTCGCCGCGATGTCTTCTACACGGGAAACGTCATCCAA
GAGCGAGCTTCGATCGTTACCAGGGTAGCCCCTACGTTCCTCCGGTTTGG
GTCGTTCGAGATATTCAAGCCGAGAGATGAGCGCACCGGGCGGTCCGGCC
CCAGCATGGGCAACGACGCCCTTCGCGTCCAGATGCTGGACTACGCAGCG
CGTCGGTTTTTCCCAGAGGCTGCCGCGGCCGGACTCGAGGGGGGCTCGAG
TGCACGGTATCTGGCGATGTGAATCGTTACCAGGGTAGCCCCTACGTTCC
TCCGGTTTGGGTCGTTCGAGATATTCAAGCCGAGAGATGAGCGCACCGGG
CGGTCCGGCCCCAGCATGGGCAACGACGCCCTTCGCGTCCAGATGCTGGA
CTACGCAGCGCGTCGGTTTTTCCCAGAGGCTGCCGCGGCCGGACTCGAGG
GGGGCTCGAGTGCACGGTATCTGGCGATGTGA
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