mRNA_H-elongata_contig17183.4425.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17183.4425.1
Unique NamemRNA_H-elongata_contig17183.4425.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17183.4425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17183contigH-elongata_contig17183:4754..5691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size885
Cds size858
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17183.4425.1prot_H-elongata_contig17183.4425.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17183 4754..5664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.6287594-CDS-H-elongata_contig17183:4753..51521622930000.6287594-CDS-H-elongata_contig17183:4753..5152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17183 4754..5152 -
1691679240.87402-CDS-H-elongata_contig17183:4753..51521691679240.87402-CDS-H-elongata_contig17183:4753..5152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17183 4754..5152 -
1622930000.6468012-CDS-H-elongata_contig17183:5205..56641622930000.6468012-CDS-H-elongata_contig17183:5205..5664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17183 5206..5664 -
1691679240.8872905-CDS-H-elongata_contig17183:5205..56641691679240.8872905-CDS-H-elongata_contig17183:5205..5664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17183 5206..5664 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.66519-UTR-H-elongata_contig17183:5664..56911622930000.66519-UTR-H-elongata_contig17183:5664..5691Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17183 5665..5691 -
1691679240.8974612-UTR-H-elongata_contig17183:5664..56911691679240.8974612-UTR-H-elongata_contig17183:5664..5691Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17183 5665..5691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17183.4425.1

>prot_H-elongata_contig17183.4425.1 ID=prot_H-elongata_contig17183.4425.1|Name=mRNA_H-elongata_contig17183.4425.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp
MKDSVVDVSAMDQEGIASLKQFVYDHGSSGDMLRLNVMLNEKTFLINAIF
VEDGYVNSEITSNILLLFEGRNTDQHVKIGSNSINYTHETKNVMVDGVSR
EFGESFVLGGRNVTTLARGSIVIMLTDTLQKDFPEEGLQGEVLSNEGTVS
LGDTSVSSYVFFRDATTDQSTCAIQYIKTVNLAQTSCTATINVEYVDGSN
DRSLEQVIQYNSTNVDLRSVNSTVHTSISTLDINGISFDTDTAGLILGDA
TSMFGIFYDEANDLLQIKYYNDTAGQYVVKREFSN*
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mRNA from alignment at H-elongata_contig17183:4754..5691-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17183.4425.1 ID=mRNA_H-elongata_contig17183.4425.1|Name=mRNA_H-elongata_contig17183.4425.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=938bp|location=Sequence derived from alignment at H-elongata_contig17183:4754..5691- (Himanthalia elongata Himel1 dioecious)
GACTCCGTTAGGGAATTATATAATTCAATGAAGGATTCGGTAGTAGATGT
TTCGGCGATGGACCAGGAAGGGATTGCTTCACTCAAGCAATTCGTATACG
ATCACGGGTCGTCGGGAGATATGTTACGACTGAACGTAATGTTAAACGAG
AAAACGTTTTTAATAAATGCAATTTTTGTTGAAGATGGATATGTAAATTC
AGAAATAACAAGCAATATCCTCCTCCTATTCGAGGGAAGAAACACAGATC
AACATGTAAAAATAGGATCAAATTCTATTAATTATACACACGAAACAAAA
AATGTTATGGTAGACGGCGTCAGCCGTGAGTTCGGAGAATCCTTTGTTTT
AGGGGGTAGAAATGTAACTACTCTCGCAAGGGGTTCAATTGTGATCATGT
TGACAGATACCTTACAAAAAGACTTCCCAGAAGAAGGTTTACAGGGGGAA
GTTCTATCGAACGAGGGAACCGTATCACTGGGCGACGTTACTACCACGAA
TACCACATACTTATAGAGGGAAAATAATTGGCTGGCGAGACATCTGTTTC
GAGTTATGTTTTTTTCAGAGATGCGACGACGGATCAGAGCACATGTGCTA
TTCAATATATAAAAACTGTAAACCTTGCACAAACTTCCTGCACAGCTACT
ATAAATGTAGAGTATGTTGACGGATCCAATGATAGATCACTCGAACAGGT
CATCCAGTATAATTCCACAAATGTTGATCTTAGATCAGTCAATTCTACGG
TTCACACGTCTATTTCAACTCTGGATATAAATGGTATTTCTTTCGACACT
GACACGGCCGGTCTTATCCTTGGCGACGCTACAAGCATGTTCGGAATATT
TTACGATGAGGCTAACGACCTTCTCCAGATTAAATATTACAACGATACCG
CCGGACAATACGTCGTAAAAAGAGAATTTAGCAACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig17183:4754..5691-

>mRNA_H-elongata_contig17183.4425.1 ID=mRNA_H-elongata_contig17183.4425.1|Name=mRNA_H-elongata_contig17183.4425.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig17183:4754..5691- (Himanthalia elongata Himel1 dioecious)
ATGAAGGATTCGGTAGTAGATGTTTCGGCGATGGACCAGGAAGGGATTGC
TTCACTCAAGCAATTCGTATACGATCACGGGTCGTCGGGAGATATGTTAC
GACTGAACGTAATGTTAAACGAGAAAACGTTTTTAATAAATGCAATTTTT
GTTGAAGATGGATATGTAAATTCAGAAATAACAAGCAATATCCTCCTCCT
ATTCGAGGGAAGAAACACAGATCAACATGTAAAAATAGGATCAAATTCTA
TTAATTATACACACGAAACAAAAAATGTTATGGTAGACGGCGTCAGCCGT
GAGTTCGGAGAATCCTTTGTTTTAGGGGGTAGAAATGTAACTACTCTCGC
AAGGGGTTCAATTGTGATCATGTTGACAGATACCTTACAAAAAGACTTCC
CAGAAGAAGGTTTACAGGGGGAAGTTCTATCGAACGAGGGAACCGTATCA
CTGGGCGACATGAAGGATTCGGTAGTAGATGTTTCGGCGATGGACCAGGA
AGGGATTGCTTCACTCAAGCAATTCGTATACGATCACGGGTCGTCGGGAG
ATATGTTACGACTGAACGTAATGTTAAACGAGAAAACGTTTTTAATAAAT
GCAATTTTTGTTGAAGATGGATATGTAAATTCAGAAATAACAAGCAATAT
CCTCCTCCTATTCGAGGGAAGAAACACAGATCAACATGTAAAAATAGGAT
CAAATTCTATTAATTATACACACGAAACAAAAAATGTTATGGTAGACGGC
GTCAGCCGTGAGTTCGGAGAATCCTTTGTTTTAGGGGGTAGAAATGTAAC
TACTCTCGCAAGGGGTTCAATTGTGATCATGTTGACAGATACCTTACAAA
AAGACTTCCCAGAAGAAGGTTTACAGGGGGAAGTTCTATCGAACGAGGGA
ACCGTATCACTGGGCGACACATCTGTTTCGAGTTATGTTTTTTTCAGAGA
TGCGACGACGGATCAGAGCACATGTGCTATTCAATATATAAAAACTGTAA
ACCTTGCACAAACTTCCTGCACAGCTACTATAAATGTAGAGTATGTTGAC
GGATCCAATGATAGATCACTCGAACAGGTCATCCAGTATAATTCCACAAA
TGTTGATCTTAGATCAGTCAATTCTACGGTTCACACGTCTATTTCAACTC
TGGATATAAATGGTATTTCTTTCGACACTGACACGGCCGGTCTTATCCTT
GGCGACGCTACAAGCATGTTCGGAATATTTTACGATGAGGCTAACGACCT
TCTCCAGATTAAATATTACAACGATACCGCCGGACAATACGTCGTAAAAA
GAGAATTTAGCAACTAAACATCTGTTTCGAGTTATGTTTTTTTCAGAGAT
GCGACGACGGATCAGAGCACATGTGCTATTCAATATATAAAAACTGTAAA
CCTTGCACAAACTTCCTGCACAGCTACTATAAATGTAGAGTATGTTGACG
GATCCAATGATAGATCACTCGAACAGGTCATCCAGTATAATTCCACAAAT
GTTGATCTTAGATCAGTCAATTCTACGGTTCACACGTCTATTTCAACTCT
GGATATAAATGGTATTTCTTTCGACACTGACACGGCCGGTCTTATCCTTG
GCGACGCTACAAGCATGTTCGGAATATTTTACGATGAGGCTAACGACCTT
CTCCAGATTAAATATTACAACGATACCGCCGGACAATACGTCGTAAAAAG
AGAATTTAGCAACTAA
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