mRNA_H-elongata_contig171728.4418.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171728.4418.1
Unique NamemRNA_H-elongata_contig171728.4418.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig171728.4418.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.970e-15
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    7 SLICVKGEYGFDNSSEGSDTCRIEVVCSRCTIEC-NEVSGSI-ILDESTVPVCEVVPTGVNKKKAGMTVETLELLPGYYRTSNQSQDVRK 270
            S  C +G +  +   EG D CR  +VCSRC  EC +E+   + + D   +P CE VP G      G T+ TLE+LPGYYR+S  S D+R+
Sbjct:  526 SFYCEEGTFSTEVEIEGEDVCRFGLVCSRCASECASELEDEVTVADPDLLPACEAVPEGAQTTSRGGTLATLEILPGYYRSSATSTDIRE 615
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BLAST of mRNA_H-elongata_contig171728.4418.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 9.390e-15
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    4 NSLICVKGEYGFDNSSE-----GSDTCRIEVVCSRCTIECNEV--SGSIILDESTVPVCEVVPTGVNKKKAGMTVETLELLPGYYRTSNQSQDVRK 270
            N   C +GE+G +   +     G+D CR   VCSRC  EC+    S + ++D  T+P CE  P G    + G T+ TLE+LPG+YR+S  S D+R+
Sbjct:  514 NDFYCEEGEFGTETLIDKDLFGGADQCRFGRVCSRCASECDSELESAAELVDAETLPTCEEAPEGSRTTRRGATLATLEILPGFYRSSETSTDIRE 609
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BLAST of mRNA_H-elongata_contig171728.4418.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.260e-14
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:    4 NSLICVKGEYGFDNSSE-----GSDTCRIEVVCSRCTIEC-NEVSGSI-ILDESTVPVCEVVPTGVNKKKAGMTVETLELLPGYYRTSNQSQDVRK 270
            N   C +GE+G +   +     G+D CR   VCSRC  EC +E+  +  ++D  T+P CE  P G    + G T+ TLE+LPG+YR+S  S D+R+
Sbjct:  490 NDFYCEEGEFGTETLIDKDLFGGADQCRFRRVCSRCASECGSELERTAELVDADTLPTCETAPEGSRTTRRGATLATLEVLPGFYRSSETSTDIRE 585
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BLAST of mRNA_H-elongata_contig171728.4418.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.650e-13
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 KNSLICVKGEYGFDN---SSEGSDTCRIEVVCSRCTIE-CNEV----SGSIILDESTVPVCEVVPTGVNKK-KAGMTVETLELLPGYYRTSNQS 255
            +N+  C  G+YG D      E +DTCR+EVVCSRC    C +     +G  +L+++ VP C+ V  GVN    AG T++TL+L  GYYRTS +S
Sbjct:  310 ENTFYCAPGQYGSDAHFLDEEVADTCRLEVVCSRCVSSPCEDDDMLDNGISVLEDNVVPHCKAVAVGVNVSGNAGTTLQTLDLESGYYRTSAES 403
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BLAST of mRNA_H-elongata_contig171728.4418.1 vs. uniprot
Match: D8LNY1_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY1_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 3.830e-5
Identity = 26/88 (29.55%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:    4 NSLICVKGEYGFDNSSEGSDTCRIEVVCSRCTIECNEVSGSIILDESTVPVCEVVPTGVNKKKAGMTVETLELLPGYYRTSNQSQDVR 267
            N+L+C    +  D ++  +     ++ C +C +EC    G  I++     +CE      +   A  T+E+L L PGY+R+SN+S+D+R
Sbjct:  516 NALLCDDDRFFLDWTNVSA----YDIACDQCDLECE---GCTIMNPDKALLCEDAFPNTDSLTADGTLESLNLAPGYWRSSNKSRDIR 596
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171728.4418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FTU5_ECTSI1.970e-1542.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTT9_ECTSI9.390e-1539.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE3.260e-1439.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUB6_ECTSI3.650e-1343.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNY1_ECTSI3.830e-529.55Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171728contigH-elongata_contig171728:468..1193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog2880.D7FTU5
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size274
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.002251-CDS-H-elongata_contig171728:467..5211622930000.002251-CDS-H-elongata_contig171728:467..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171728 468..521 +
1691679240.733997-CDS-H-elongata_contig171728:467..5211691679240.733997-CDS-H-elongata_contig171728:467..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171728 468..521 +
1622930000.0330584-CDS-H-elongata_contig171728:975..11911622930000.0330584-CDS-H-elongata_contig171728:975..1191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171728 976..1191 +
1691679240.749677-CDS-H-elongata_contig171728:975..11911691679240.749677-CDS-H-elongata_contig171728:975..1191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171728 976..1191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171728.4418.1prot_H-elongata_contig171728.4418.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171728 468..1191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171728.4418.1

>prot_H-elongata_contig171728.4418.1 ID=prot_H-elongata_contig171728.4418.1|Name=mRNA_H-elongata_contig171728.4418.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
KNSLICVKGEYGFDNSSEGSDTCRIEVVCSRCTIECNEVSGSIILDESTV
PVCEVVPTGVNKKKAGMTVETLELLPGYYRTSNQSQDVRK
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mRNA from alignment at H-elongata_contig171728:468..1193+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171728.4418.1 ID=mRNA_H-elongata_contig171728.4418.1|Name=mRNA_H-elongata_contig171728.4418.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=726bp|location=Sequence derived from alignment at H-elongata_contig171728:468..1193+ (Himanthalia elongata Himel1 dioecious)
AAAAACTCGTTAATCTGTGTCAAGGGCGAGTACGGTTTCGACAACAGCAG
TGAGGTGATCGTGTAAAAAATGATTTCCAATCATCACTCAAACTTCAAAT
CACAGCTTCGTAGCTTGATCCTTCCCCCGCCGTCTGTCGTTGTCGTTTTA
TGTCCAGCAGAGCATATTACTGCCTCGGTATATGACGATCTTCTCGTTTA
GGAGTAGTTTTATCATTTGAATGTATTTTCCTCTCTCACCTTTGGTTGCA
ATGTTTTTGTAATTACACATTTTGGCGGACCGATTATGGTTAAACCGTGA
AATATCGAGCCCGCAACGTACTTAGATATACTCTAAGTTCAGTTTGTACT
TAATGATTAGCTCGACGATCGCCACACATATATAGCCTACAATGCTTCTA
GAGTGTTTCTTCCGGCACGTGGCGTATTCTACGTTATCAACGCATCGACG
ACAAAAACTTAACAACAAAGACGAGCTACCCCCGCCTCGCTGATCTCTCC
GCTCCCAGGGTTCCGATACATGTCGTATAGAGGTCGTCTGCTCTCGTTGC
ACCATCGAGTGTAACGAAGTCTCCGGGAGCATTATCTTAGACGAATCAAC
GGTACCAGTTTGCGAGGTCGTCCCTACAGGGGTGAACAAAAAAAAAGCAG
GAATGACCGTCGAGACGCTGGAACTCCTACCAGGGTACTACCGAACTTCA
AACCAGAGCCAGGATGTACGGAAGTG
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Coding sequence (CDS) from alignment at H-elongata_contig171728:468..1193+

>mRNA_H-elongata_contig171728.4418.1 ID=mRNA_H-elongata_contig171728.4418.1|Name=mRNA_H-elongata_contig171728.4418.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig171728:468..1193+ (Himanthalia elongata Himel1 dioecious)
AAAAACTCGTTAATCTGTGTCAAGGGCGAGTACGGTTTCGACAACAGCAG
TGAGAAAAACTCGTTAATCTGTGTCAAGGGCGAGTACGGTTTCGACAACA
GCAGTGAGGGTTCCGATACATGTCGTATAGAGGTCGTCTGCTCTCGTTGC
ACCATCGAGTGTAACGAAGTCTCCGGGAGCATTATCTTAGACGAATCAAC
GGTACCAGTTTGCGAGGTCGTCCCTACAGGGGTGAACAAAAAAAAAGCAG
GAATGACCGTCGAGACGCTGGAACTCCTACCAGGGTACTACCGAACTTCA
AACCAGAGCCAGGATGTACGGAAGGGTTCCGATACATGTCGTATAGAGGT
CGTCTGCTCTCGTTGCACCATCGAGTGTAACGAAGTCTCCGGGAGCATTA
TCTTAGACGAATCAACGGTACCAGTTTGCGAGGTCGTCCCTACAGGGGTG
AACAAAAAAAAAGCAGGAATGACCGTCGAGACGCTGGAACTCCTACCAGG
GTACTACCGAACTTCAAACCAGAGCCAGGATGTACGGAAG
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