mRNA_H-elongata_contig171719.4417.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171719.4417.1
Unique NamemRNA_H-elongata_contig171719.4417.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig171719.4417.1 vs. uniprot
Match: A0A6H5KYQ7_9PHAE (Zeta_toxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ7_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.580e-18
Identity = 69/186 (37.10%), Postives = 92/186 (49.46%), Query Frame = 1 
Query:    1 VWAPEDQVLARAARRATQTGRVIPPSILLETIHAVPRSVEKLAPLTDYCVRIDNDGDI----VEQAPDFPLSGPLLPSTAAAAAAAKSSEINLNGAYDGGCLSPAYGGLRVGSEEI------------------------AGDGGDDGRTVVPAGEIYPRVLAGSRAGFPVLATPGETWETFRRTF 474
            VWAPE++V+ RA RR   TGRVIPP++L +TI AVPRSVE LAPL DYCVRIDN GD      +++       PL    +   ++  S  + +  +             R+ S ++                        A +GG +GR+   A    P V+       PVLAT GETWE+FRRTF
Sbjct:  322 VWAPEEEVMKRAVRRGLTTGRVIPPALLRDTIRAVPRSVEMLAPLADYCVRIDNVGDDGWRQSQESQQQQSRRPLRQHNSCLVSSEMSDMVMMPTSXXXXXXXXXSASARLQSSDMSEISRPVGSSLDVPTACTGDASRSAAEGGGEGRS--GAHSEVPAVI------MPVLATAGETWESFRRTF 499
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BLAST of mRNA_H-elongata_contig171719.4417.1 vs. uniprot
Match: D7FLS0_ECTSI (Zeta_toxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLS0_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 8.720e-18
Identity = 74/193 (38.34%), Postives = 94/193 (48.70%), Query Frame = 1 
Query:    1 VWAPEDQVLARAARRATQTGRVIPPSILLETIHAVPRSVEKLAPLTDYCVRIDNDGD---------------------------------IVEQAPDFPLSGPLLPSTAAAAAAAKSSEIN--LNGAYDGGCLSPAYGGLRVGSEEIAGDGGDDGRTVVPAGEIYPRVLAGSRAGFPVLATPGETWETFRRTF 474
            VWAPE++V+ RA RR   TGRVIPPS+L +TI AVPRSVE LAPL DYCVRIDN GD                                 ++  A +         S++A   ++   EI+  +  + D      A  G    S   A +GG +GR+   A    P V+       PVLAT GETWE+FRRTF
Sbjct:  324 VWAPEEEVMKRAVRRGLTTGRVIPPSVLRDTIRAVPRSVEMLAPLADYCVRIDNVGDDWRRQSQEXXXXXXXXXXXXXXXCLVSSDMSEMVLMPASNEXXXXXXXXSSSARLQSSDMPEISRPVGSSLDVPTACTACTGDETRS---AAEGGGEGRS--RAHSEVPAVI------MPVLATSGETWESFRRTF 505
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171719.4417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYQ7_9PHAE2.580e-1837.10Zeta_toxin domain-containing protein n=1 Tax=Ectoc... [more]
D7FLS0_ECTSI8.720e-1838.34Zeta_toxin domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171719contigH-elongata_contig171719:147..1230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue1.6e-18
Seed eggNOG ortholog2880.D7FLS0
EggNOG free text desc.Zeta toxin
EggNOG OGs2BIBQ@1,2S1DY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-03_005260.1
Exons1
Model size1084
Cds size594
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929999.9204183-CDS-H-elongata_contig171719:146..7401622929999.9204183-CDS-H-elongata_contig171719:146..740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171719 147..740 +
1691679240.709395-CDS-H-elongata_contig171719:146..7401691679240.709395-CDS-H-elongata_contig171719:146..740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171719 147..740 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929999.943375-UTR-H-elongata_contig171719:740..12301622929999.943375-UTR-H-elongata_contig171719:740..1230Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig171719 741..1230 +
1691679240.7233684-UTR-H-elongata_contig171719:740..12301691679240.7233684-UTR-H-elongata_contig171719:740..1230Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig171719 741..1230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171719.4417.1prot_H-elongata_contig171719.4417.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171719 147..740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171719.4417.1

>prot_H-elongata_contig171719.4417.1 ID=prot_H-elongata_contig171719.4417.1|Name=mRNA_H-elongata_contig171719.4417.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
VWAPEDQVLARAARRATQTGRVIPPSILLETIHAVPRSVEKLAPLTDYCV
RIDNDGDIVEQAPDFPLSGPLLPSTAAAAAAAKSSEINLNGAYDGGCLSP
AYGGLRVGSEEIAGDGGDDGRTVVPAGEIYPRVLAGSRAGFPVLATPGET
WETFRRTFQYHGRPSQETVPEDGGVPSLPSDRLATVAAGDKQELPAF*
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mRNA from alignment at H-elongata_contig171719:147..1230+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171719.4417.1 ID=mRNA_H-elongata_contig171719.4417.1|Name=mRNA_H-elongata_contig171719.4417.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1084bp|location=Sequence derived from alignment at H-elongata_contig171719:147..1230+ (Himanthalia elongata Himel1 dioecious)
GTGTGGGCACCGGAGGATCAGGTACTCGCGAGAGCCGCCCGCAGAGCCAC
CCAAACGGGCCGAGTCATACCGCCTTCCATCCTTCTTGAAACCATCCACG
CGGTGCCGCGTTCGGTAGAGAAGCTTGCCCCGCTCACTGACTACTGTGTG
CGAATAGACAACGATGGGGATATCGTCGAACAAGCTCCTGATTTCCCGTT
GTCCGGGCCTTTACTTCCTTCCACAGCCGCCGCCGCTGCTGCTGCCAAAT
CCTCCGAGATTAACCTCAACGGCGCGTACGACGGTGGCTGTTTGAGCCCG
GCCTACGGAGGGTTACGTGTCGGTTCGGAGGAGATCGCGGGTGACGGTGG
CGATGACGGTAGAACTGTTGTGCCCGCGGGCGAGATTTACCCGCGTGTGT
TGGCGGGATCCAGAGCGGGATTCCCCGTCCTGGCCACGCCTGGGGAGACG
TGGGAAACGTTCCGAAGAACGTTTCAGTACCACGGACGACCGTCTCAGGA
AACGGTTCCAGAGGATGGTGGTGTGCCGAGCCTGCCATCGGACCGCCTTG
CGACGGTAGCAGCAGGAGACAAGCAAGAGCTGCCGGCGTTTTGAGGGATG
GGCCCGTGTTGACGCGTGAAGAATCCAGCCGCGCAGCCCATCTGCACGAT
TATATTTTTAAGATATATCTATCCTGCGCGTGTCGTGTTTATGCCGACAG
GGTTTCCGTGGTCTGAAGCGGCGACGGATGGTGCAGTCGCAGCTTACCAA
CCGTGTGTGCCGTGTGTTGAAGGGGGGATACTACAACCCCTTACCCCCGC
GGGACCAGGTATTGGTGTCCCCGCCCTTCCCGCCACAAGGAAATGAGGGC
CCTGCAGACAGTTCAGGTCAGGTAAAAAAAGTCAGAGCAGGATACGTATT
GTGTCTTCGGAAAGGCCTCGAGACGAGATAATCGATTTCGAAATCACATT
TCGTGGAATTTTGCAAAGCCGGCCTTTAGTTGTCGAGAAACTAGGTATCT
GCGTGTGTGTGTGTATGTGTGTATATATATTTATCAAGTGTATGTGTGTA
TGTACATGCGCAATCCGGCCGTGCCATTCTAGAT
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Coding sequence (CDS) from alignment at H-elongata_contig171719:147..1230+

>mRNA_H-elongata_contig171719.4417.1 ID=mRNA_H-elongata_contig171719.4417.1|Name=mRNA_H-elongata_contig171719.4417.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig171719:147..1230+ (Himanthalia elongata Himel1 dioecious)
GTGTGGGCACCGGAGGATCAGGTACTCGCGAGAGCCGCCCGCAGAGCCAC
CCAAACGGGCCGAGTCATACCGCCTTCCATCCTTCTTGAAACCATCCACG
CGGTGCCGCGTTCGGTAGAGAAGCTTGCCCCGCTCACTGACTACTGTGTG
CGAATAGACAACGATGGGGATATCGTCGAACAAGCTCCTGATTTCCCGTT
GTCCGGGCCTTTACTTCCTTCCACAGCCGCCGCCGCTGCTGCTGCCAAAT
CCTCCGAGATTAACCTCAACGGCGCGTACGACGGTGGCTGTTTGAGCCCG
GCCTACGGAGGGTTACGTGTCGGTTCGGAGGAGATCGCGGGTGACGGTGG
CGATGACGGTAGAACTGTTGTGCCCGCGGGCGAGATTTACCCGCGTGTGT
TGGCGGGATCCAGAGCGGGATTCCCCGTCCTGGCCACGCCTGGGGAGACG
TGGGAAACGTTCCGAAGAACGTTTCAGTACCACGGACGACCGTCTCAGGA
AACGGTTCCAGAGGATGGTGGTGTGCCGAGCCTGCCATCGGACCGCCTTG
CGACGGTAGCAGCAGGAGACAAGCAAGAGCTGCCGGCGTTTTGAGTGTGG
GCACCGGAGGATCAGGTACTCGCGAGAGCCGCCCGCAGAGCCACCCAAAC
GGGCCGAGTCATACCGCCTTCCATCCTTCTTGAAACCATCCACGCGGTGC
CGCGTTCGGTAGAGAAGCTTGCCCCGCTCACTGACTACTGTGTGCGAATA
GACAACGATGGGGATATCGTCGAACAAGCTCCTGATTTCCCGTTGTCCGG
GCCTTTACTTCCTTCCACAGCCGCCGCCGCTGCTGCTGCCAAATCCTCCG
AGATTAACCTCAACGGCGCGTACGACGGTGGCTGTTTGAGCCCGGCCTAC
GGAGGGTTACGTGTCGGTTCGGAGGAGATCGCGGGTGACGGTGGCGATGA
CGGTAGAACTGTTGTGCCCGCGGGCGAGATTTACCCGCGTGTGTTGGCGG
GATCCAGAGCGGGATTCCCCGTCCTGGCCACGCCTGGGGAGACGTGGGAA
ACGTTCCGAAGAACGTTTCAGTACCACGGACGACCGTCTCAGGAAACGGT
TCCAGAGGATGGTGGTGTGCCGAGCCTGCCATCGGACCGCCTTGCGACGG
TAGCAGCAGGAGACAAGCAAGAGCTGCCGGCGTTTTGA
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