mRNA_H-elongata_contig171559.4409.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171559.4409.1
Unique NamemRNA_H-elongata_contig171559.4409.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig171559.4409.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.450e-10
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:   25 WVCDTGASQHFSNDSAYMIDFRECQKFMRTASGKRFPIEGHGDLILHFRSEGEVVHLKLRNVAYVPQLSHNLLSLRAVA 261
            WV D+GAS HF N+S++  +       +R A+G    IEG G + L   +   +V ++L+NV+Y+P L +NL SL  V+
Sbjct:  297 WVIDSGASDHFCNNSSWFTNLEPSTGVVRAANGGDMAIEGCGSIHLEMNTPSGIVEVELQNVSYMPSLQYNLFSLSRVS 375
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BLAST of mRNA_H-elongata_contig171559.4409.1 vs. uniprot
Match: A0A232EDH5_9HYME (Uncharacterized protein n=1 Tax=Trichomalopsis sarcophagae TaxID=543379 RepID=A0A232EDH5_9HYME)

HSP 1 Score: 53.1 bits (126), Expect = 7.810e-7
Identity = 29/85 (34.12%), Postives = 43/85 (50.59%), Query Frame = 1 
Query:    7 KVGDERWVCDTGASQHFSNDSAYMIDFRECQ-KFMRTASGKRFPIEGHGDLILHFRSEGEVVHLKLRNVAYVPQLSHNLLSLRAV 258
            K+ D+ W+ D+GAS H  ND   +    +   K +  A   R  ++G G+ IL            LR V Y+PQL+ NL+S +AV
Sbjct:   39 KIRDKDWILDSGASVHMCNDLNLLHKLSKSSIKTVTAADHNRIAVQGEGEAILSSTQNSSDRIFHLRRVLYIPQLTANLVSTKAV 123
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BLAST of mRNA_H-elongata_contig171559.4409.1 vs. uniprot
Match: UPI0005AC09DC (homeobox protein 9-like n=1 Tax=Fopius arisanus TaxID=64838 RepID=UPI0005AC09DC)

HSP 1 Score: 53.9 bits (128), Expect = 2.100e-6
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:   25 WVCDTGASQHFSNDSAYMIDF-RECQKFMRTASGKRFPIEGHGDLILHFRSEGEVVHLKLRNVAYVPQLSHNLLSLRAVAN 264
            W+ D+GAS H S +  +  +F R+    + TA       EG GD+ +   + G VVHL +++V YVP+ + NLLS+   +N
Sbjct:  278 WIIDSGASTHISPERNFFQNFKRKDLAVIVTADESILHAEGVGDIEIPVSTNGNVVHLLVKDVLYVPKAATNLLSINNTSN 358
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BLAST of mRNA_H-elongata_contig171559.4409.1 vs. uniprot
Match: A0A1S3Y1Z5_TOBAC (uncharacterized protein LOC107771318 n=2 Tax=Nicotiana TaxID=4085 RepID=A0A1S3Y1Z5_TOBAC)

HSP 1 Score: 50.1 bits (118), Expect = 4.960e-5
Identity = 28/82 (34.15%), Postives = 42/82 (51.22%), Query Frame = 1 
Query:    7 KVGDERWVCDTGASQHFSNDSAYMIDFRECQKFMRTASGKRFPIE-GHGDLILHFRSEGEVVHLKLRNVAYVPQLSHNLLSL 249
            KV  +RW+ D+GA+ H   +  +  DF E  K      G++  +  G    I H  S   +  L ++NV YVPQ  +NLLS+
Sbjct:  171 KVKQDRWIIDSGATNHMVFNLDFFTDFMEIPK----GEGRKVQLSTGETSRITHLGSSSILNGLPIKNVLYVPQFRYNLLSV 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171559.4409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6G0X3B5_9STRA3.450e-1037.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A232EDH5_9HYME7.810e-734.12Uncharacterized protein n=1 Tax=Trichomalopsis sar... [more]
UPI0005AC09DC2.100e-635.80homeobox protein 9-like n=1 Tax=Fopius arisanus Ta... [more]
A0A1S3Y1Z5_TOBAC4.960e-534.15uncharacterized protein LOC107771318 n=2 Tax=Nicot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171559contigH-elongata_contig171559:1078..1344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929999.0419023-CDS-H-elongata_contig171559:1077..13441622929999.0419023-CDS-H-elongata_contig171559:1077..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171559 1078..1344 +
1691679240.4125535-CDS-H-elongata_contig171559:1077..13441691679240.4125535-CDS-H-elongata_contig171559:1077..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171559 1078..1344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171559.4409.1prot_H-elongata_contig171559.4409.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171559 1078..1344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171559.4409.1

>prot_H-elongata_contig171559.4409.1 ID=prot_H-elongata_contig171559.4409.1|Name=mRNA_H-elongata_contig171559.4409.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
GGKVGDERWVCDTGASQHFSNDSAYMIDFRECQKFMRTASGKRFPIEGHG
DLILHFRSEGEVVHLKLRNVAYVPQLSHNLLSLRAVANS
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mRNA from alignment at H-elongata_contig171559:1078..1344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171559.4409.1 ID=mRNA_H-elongata_contig171559.4409.1|Name=mRNA_H-elongata_contig171559.4409.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig171559:1078..1344+ (Himanthalia elongata Himel1 dioecious)
GGTGGTAAGGTTGGGGACGAGCGTTGGGTGTGTGACACCGGCGCTTCGCA
GCATTTTAGCAATGACTCTGCGTACATGATCGATTTCCGCGAATGCCAAA
AGTTTATGCGGACGGCTAGCGGGAAGAGATTCCCGATCGAAGGTCACGGT
GACCTTATCTTGCACTTTCGGTCTGAGGGAGAGGTGGTACATCTCAAGCT
TCGCAATGTAGCGTATGTGCCACAACTCTCTCACAATCTGTTATCACTAA
GAGCAGTAGCCAACAGT
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Coding sequence (CDS) from alignment at H-elongata_contig171559:1078..1344+

>mRNA_H-elongata_contig171559.4409.1 ID=mRNA_H-elongata_contig171559.4409.1|Name=mRNA_H-elongata_contig171559.4409.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig171559:1078..1344+ (Himanthalia elongata Himel1 dioecious)
GGTGGTAAGGTTGGGGACGAGCGTTGGGTGTGTGACACCGGCGCTTCGCA
GCATTTTAGCAATGACTCTGCGTACATGATCGATTTCCGCGAATGCCAAA
AGTTTATGCGGACGGCTAGCGGGAAGAGATTCCCGATCGAAGGTCACGGT
GACCTTATCTTGCACTTTCGGTCTGAGGGAGAGGTGGTACATCTCAAGCT
TCGCAATGTAGCGTATGTGCCACAACTCTCTCACAATCTGTTATCACTAA
GAGCAGTAGCCAACAGTGGTGGTAAGGTTGGGGACGAGCGTTGGGTGTGT
GACACCGGCGCTTCGCAGCATTTTAGCAATGACTCTGCGTACATGATCGA
TTTCCGCGAATGCCAAAAGTTTATGCGGACGGCTAGCGGGAAGAGATTCC
CGATCGAAGGTCACGGTGACCTTATCTTGCACTTTCGGTCTGAGGGAGAG
GTGGTACATCTCAAGCTTCGCAATGTAGCGTATGTGCCACAACTCTCTCA
CAATCTGTTATCACTAAGAGCAGTAGCCAACAGT
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