mRNA_H-elongata_contig171528.4407.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A6H5KRX4_9PHAE (ANAPC4_WD40 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRX4_9PHAE) HSP 1 Score: 179 bits (455), Expect = 2.070e-53 Identity = 79/92 (85.87%), Postives = 87/92 (94.57%), Query Frame = 1
Query: 1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSG 276
LALCANDNRLQIY+GCNSP+F++WRL HVLEEHDL+I+GISWSP++NKIVTCSHDRNAFVWSYDAAQ KWNPILCAL L RAALDV WSPSG
Sbjct: 27 LALCANDNRLQIYEGCNSPSFASWRLAHVLEEHDLVISGISWSPVTNKIVTCSHDRNAFVWSYDAAQAKWNPILCALMLTRAALDVHWSPSG 118
BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A836CE76_9STRA (Actin-related protein 2/3 complex subunit ARPC1B or p41-Arc n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE76_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.170e-38 Identity = 59/92 (64.13%), Postives = 74/92 (80.43%), Query Frame = 1
Query: 1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSG 276
LALC N+N L IY+GCNS + ++WR HVL EHD++I+GISWS +NKIVTCSHDRNAFVW +DAA +W P LC L+++RAAL V+WSP G
Sbjct: 26 LALCPNNNELHIYEGCNSADMASWRRAHVLAEHDMIISGISWSHANNKIVTCSHDRNAFVWKFDAAANRWVPTLCVLRIDRAALSVEWSPDG 117
BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A0W8CZ58_PHYNI (Fatty acid synthase subunit beta n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CZ58_PHYNI) HSP 1 Score: 124 bits (312), Expect = 2.140e-33 Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 1
Query: 1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSGKSW 285
LA+C N N + IY GC++P+ S WR VL EHD+L+ G+ WSP+ +++V+CSHDR+AFVW Y+AA +W P+L L++ RAA +VKWSP GK +
Sbjct: 28 LAICPNSNEIWIYSGCHAPDPSQWRKEAVLTEHDMLVCGLDWSPVHDQLVSCSHDRSAFVWKYEAAYRQWKPLLVVLRITRAATNVKWSPDGKKF 122
BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A3M6V8F1_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8F1_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.380e-33 Identity = 49/95 (51.58%), Postives = 73/95 (76.84%), Query Frame = 1
Query: 1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSGKSW 285
LA+C N N + IY GC++P+ S WR VL EHD+L++G+ WSP+ +++V+CSHDR+AFVW Y+A+ +W P+L L++ RAA++VKWSP GK +
Sbjct: 29 LAICPNSNEIWIYSGCHAPDPSQWRKEAVLTEHDMLVSGLDWSPVHDQLVSCSHDRSAFVWKYEASYRQWKPLLVVLRVTRAAINVKWSPDGKKF 123
BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: D0P410_PHYIT (Actin-related protein 2/3 complex subunit n=25 Tax=Peronosporaceae TaxID=4777 RepID=D0P410_PHYIT) HSP 1 Score: 126 bits (317), Expect = 5.990e-33 Identity = 51/95 (53.68%), Postives = 71/95 (74.74%), Query Frame = 1
Query: 1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSGKSW 285
LA+C N N + IY GC++PN S WR VL EHD+L+ G+ WSP+ +++V+CSHDR+AFVW Y+AA +W P+L L++ RAA +VKWSP GK +
Sbjct: 27 LAICPNSNEIWIYSGCHAPNPSQWRKEAVLTEHDMLVCGLDWSPVHDQLVSCSHDRSAFVWKYEAAYRQWKPLLVVLRITRAATNVKWSPDGKKF 121
BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A067BR35_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BR35_SAPPC) HSP 1 Score: 119 bits (298), Expect = 8.230e-33 Identity = 45/95 (47.37%), Postives = 71/95 (74.74%), Query Frame = 1
Query: 1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSGKSW 285
+A+C N N + IY C++P+ + WR +L EHD++++G+ WSP+ + IV+CSHDR+AFVW+Y+ ++ KW P L L++ RAA++VKWSP GK +
Sbjct: 22 VAICPNTNEIWIYSNCHAPDVAQWRKEAILTEHDMVVSGLDWSPVHDMIVSCSHDRSAFVWNYNPSERKWKPSLVVLRITRAAINVKWSPDGKKF 116
BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A662WKQ5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKQ5_9STRA) HSP 1 Score: 122 bits (305), Expect = 6.560e-32 Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 1
Query: 1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSG 276
LA+C N N + IY GC+ P+ + WR VL EHD+L+ G+ WSP+ +++V+CSHDR+AFVW Y+AA +W P+L L++ RAA++VKWSP G
Sbjct: 28 LAICPNSNEIWIYSGCHQPDATQWRKEAVLTEHDMLVCGLDWSPVHDQLVSCSHDRSAFVWKYEAAFRQWKPLLVVLRITRAAINVKWSPDG 119
BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A8K1FHC8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHC8_PYTOL) HSP 1 Score: 122 bits (305), Expect = 3.450e-31 Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 1
Query: 1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSG 276
+ALC N N + IY GC +P+ + WR VL EHD++++G+ WSP+++ IV+CSHDR AFVW YD A +W P L L+++RAA++VKWSPSG
Sbjct: 28 VALCPNSNEIWIYSGCQNPDATKWRKEAVLTEHDMIVSGLDWSPVNDMIVSCSHDRGAFVWKYDPAFRQWKPSLVVLRISRAAINVKWSPSG 119
BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A1V9Z0K3_9STRA (Actin-related protein 2/3 complex subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z0K3_9STRA) HSP 1 Score: 124 bits (310), Expect = 5.880e-31 Identity = 48/95 (50.53%), Postives = 71/95 (74.74%), Query Frame = 1
Query: 1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSGKSW 285
+A+C N N + IY C++P+ + WR +L EHD+L++G+ WSP+ N IV+CSHDR+AFVW+Y+ A+ KW P L L++ RAA++VKWSP GK +
Sbjct: 22 VAICPNTNEIWIYSNCHAPDVAQWRKEAILTEHDMLVSGLDWSPVHNMIVSCSHDRSAFVWNYEPAERKWKPSLVVLRITRAAINVKWSPDGKKF 116
BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: F0W7K8_9STRA (Actinrelated protein 2/3 complex subunit putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7K8_9STRA) HSP 1 Score: 122 bits (305), Expect = 5.930e-31 Identity = 46/95 (48.42%), Postives = 71/95 (74.74%), Query Frame = 1
Query: 1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSGKSW 285
+A+C N N + IY C++ N + WR +L EHD+++TG+ WSP+++ IV+CSHDR+A+VW YD+ KW P++ L++ RAA+DVKWSP+GK +
Sbjct: 53 VAVCPNTNEIWIYSNCHNVNVAKWRREAILTEHDMIVTGLDWSPVNDMIVSCSHDRSAYVWQYDSPTCKWKPLMVVLRITRAAIDVKWSPNGKKF 147 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig171528.4407.1 >prot_H-elongata_contig171528.4407.1 ID=prot_H-elongata_contig171528.4407.1|Name=mRNA_H-elongata_contig171528.4407.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVback to top mRNA from alignment at H-elongata_contig171528:195..1118+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig171528.4407.1 ID=mRNA_H-elongata_contig171528.4407.1|Name=mRNA_H-elongata_contig171528.4407.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=924bp|location=Sequence derived from alignment at H-elongata_contig171528:195..1118+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig171528:195..1118+ >mRNA_H-elongata_contig171528.4407.1 ID=mRNA_H-elongata_contig171528.4407.1|Name=mRNA_H-elongata_contig171528.4407.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig171528:195..1118+ (Himanthalia elongata Himel1 dioecious)back to top |