mRNA_H-elongata_contig17128.4397.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17128.4397.1
Unique NamemRNA_H-elongata_contig17128.4397.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17128.4397.1 vs. uniprot
Match: D7FR40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR40_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 2.930e-44
Identity = 87/142 (61.27%), Postives = 101/142 (71.13%), Query Frame = 1 
Query:  154 QPRRAEPPPSVEAFQTTNXXXXXXXXXXXXXXXXXNRRETQDEAGEFRPLIAKTDRESVLRGEDYWIDYRELDAARARKVAKAKAPAPDQFAQSKMKAEIVNPYKQNWILVISIAITAMAAFIRINPDVLNDAAISTFPTEL 579
            Q R A+ PP +E+ QT N                  R   ++E GE RPL+ KTDRESVLRGEDYWIDYRE+D  +A + AKAKAPAPDQFAQSKMKAEIVNPYKQNWIL IS+AI A+A F+RINP +L+D AI TFP EL
Sbjct:  143 QGRMAQAPPGLESLQTENQRRRALPLSKLKRVKPKKRAAKEEEEGEIRPLVLKTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWILAISLAIVAIAGFVRINPGILDDPAIITFPNEL 284
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BLAST of mRNA_H-elongata_contig17128.4397.1 vs. uniprot
Match: A0A835YJZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.020e-14
Identity = 54/144 (37.50%), Postives = 75/144 (52.08%), Query Frame = 1 
Query:  151 NQPRRAEPPPSVEAFQTTNXXXXXXXXXXXXXXXXXNRRETQDEAGEFRPLIAKTDRE-SVLRGEDYWIDYRELDAARARKVAKAKAPAPDQFAQSKMKAEIVNPYKQNWILVISIAITAMAAFIRINPDVLNDAAISTFPTEL 579
            NQP   + PP V  FQ+ +                   ++ Q+  GE RPL+ K     SVL+GEDYWID   ++    + V     P  DQF   K++ EIV+PYK N IL I + ITA+ AF+++NP +L+   I  FP EL
Sbjct:   48 NQP---DQPPDVSDFQSDSQKRRNRPLSQLKRQRKV--KQVQEPEGELRPLVKKERNSMSVLQGEDYWIDLSLVNEDNDKPVKPT--PTEDQFKDEKLREEIVSPYKNNTILGIILGITAIIAFVQLNPGILDSYPIINFPEEL 184
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BLAST of mRNA_H-elongata_contig17128.4397.1 vs. uniprot
Match: K0S2D5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S2D5_THAOC)

HSP 1 Score: 63.2 bits (152), Expect = 2.540e-8
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:  319 RESVLRGEDYWIDYRELDAARARKVAKAKAPAPDQFAQSKMKAEIVNPYKQNWILVISIAITAMAAFIRINPDVL 543
            R++V +G DYWID  E++ ++AR+   AK     + +Q K+KAEIV PYKQNWI   S+ I  +A   +  P++L
Sbjct:   45 RDAVEQGLDYWIDEEEINKSKARESRPAKTSKRSRMSQDKLKAEIVAPYKQNWIGYFSLTIVILATIGKQFPELL 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17128.4397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FR40_ECTSI2.930e-4461.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YJZ1_9STRA1.020e-1437.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0S2D5_THAOC2.540e-842.67Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17128contigH-elongata_contig17128:1144..5225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue1.3e-40
Seed eggNOG ortholog2880.D7FR40
EggNOG OGs2D131@1,2SGIC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003600.1
Exons5
Model size1991
Cds size540
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929997.2844198-UTR-H-elongata_contig17128:1143..11851622929997.2844198-UTR-H-elongata_contig17128:1143..1185Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17128 1144..1185 +
1691679239.8830292-UTR-H-elongata_contig17128:1143..11851691679239.8830292-UTR-H-elongata_contig17128:1143..1185Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17128 1144..1185 +
1622929997.3646665-UTR-H-elongata_contig17128:3816..52251622929997.3646665-UTR-H-elongata_contig17128:3816..5225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17128 3817..5225 +
1691679239.9688332-UTR-H-elongata_contig17128:3816..52251691679239.9688332-UTR-H-elongata_contig17128:3816..5225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17128 3817..5225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929997.299125-CDS-H-elongata_contig17128:1185..12101622929997.299125-CDS-H-elongata_contig17128:1185..1210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17128 1186..1210 +
1691679239.904385-CDS-H-elongata_contig17128:1185..12101691679239.904385-CDS-H-elongata_contig17128:1185..1210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17128 1186..1210 +
1622929997.316612-CDS-H-elongata_contig17128:1532..17311622929997.316612-CDS-H-elongata_contig17128:1532..1731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17128 1533..1731 +
1691679239.9197257-CDS-H-elongata_contig17128:1532..17311691679239.9197257-CDS-H-elongata_contig17128:1532..1731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17128 1533..1731 +
1622929997.329329-CDS-H-elongata_contig17128:2284..23841622929997.329329-CDS-H-elongata_contig17128:2284..2384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17128 2285..2384 +
1691679239.9280674-CDS-H-elongata_contig17128:2284..23841691679239.9280674-CDS-H-elongata_contig17128:2284..2384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17128 2285..2384 +
1622929997.3394141-CDS-H-elongata_contig17128:2957..30931622929997.3394141-CDS-H-elongata_contig17128:2957..3093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17128 2958..3093 +
1691679239.9361076-CDS-H-elongata_contig17128:2957..30931691679239.9361076-CDS-H-elongata_contig17128:2957..3093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17128 2958..3093 +
1622929997.3533254-CDS-H-elongata_contig17128:3736..38161622929997.3533254-CDS-H-elongata_contig17128:3736..3816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17128 3737..3816 +
1691679239.955985-CDS-H-elongata_contig17128:3736..38161691679239.955985-CDS-H-elongata_contig17128:3736..3816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17128 3737..3816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17128.4397.1prot_H-elongata_contig17128.4397.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17128 1186..3816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17128.4397.1

>prot_H-elongata_contig17128.4397.1 ID=prot_H-elongata_contig17128.4397.1|Name=mRNA_H-elongata_contig17128.4397.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
MALSEETEASSSSASSDIESTVGNLSLRESPLEANINQPRRAEPPPSVEA
FQTTNQRRRARPLSQLKRVKPKNRRETQDEAGEFRPLIAKTDRESVLRGE
DYWIDYRELDAARARKVAKAKAPAPDQFAQSKMKAEIVNPYKQNWILVIS
IAITAMAAFIRINPDVLNDAAISTFPTEL*
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mRNA from alignment at H-elongata_contig17128:1144..5225+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17128.4397.1 ID=mRNA_H-elongata_contig17128.4397.1|Name=mRNA_H-elongata_contig17128.4397.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4082bp|location=Sequence derived from alignment at H-elongata_contig17128:1144..5225+ (Himanthalia elongata Himel1 dioecious)
CCTCTGACTTCCCAACAGAGCAGCGCCAGAGGTGCTGGTCGTATGGCCCT
GAGCGAGGAAACCGAAGGTTCGTTTAATTTTCAATGAAATACCCGGTGCG
TGGATGGAGTAGCCCTTCCCTTGCGCCGTAAAGCGGTGTAGCTTCTTACT
GTTTCGAGTCAGGAATGGACTACGTCGGTAGACGCGCTGAGTCGACGTTG
CTGCTTTGTCAAAAACATGCACGATTGTAAAGCTCCTGAGCTCCGGGTAC
CACGACCCAAAGTACGCAATGTGAAAACCCAAAGTACTCGTGTTCCTTCA
TTCCGCCGGGCAACCTTTGAATCTTTACACCAATATTTTGCCGGCCATCG
CTGGGCGGGCACCTACGCCTTCCTCTCACCTGCCCGCAGCGTCGAGCTCC
TCCGCGTCTTCGGACATTGAATCGACCGTTGGAAACCTCAGTCTACGTGA
ATCGCCACTCGAAGCGAACATAAACCAACCGAGAAGAGCGGAGCCACCCC
CGAGTGTAGAGGCGTTCCAGACGACCAATCAACGTCGCCGGGCTCGTCCC
CTCAGCCAATTGAAACGCGTCAAACCCAAGAACAGGAGGTAAGAGGAAGG
CGGGAGAGCCACCTTTGATGAATCATCGGTGAAGTCAGGAGCGTGCAGCA
TGGAAGCGCCTTGTTTCCTTAGGTCGCGATCAAAAAGATTGCGGCCTGGA
CGCGGCCAAAACGGTTCAGCTGACCGGTAGTGGAGTTGCTTTGTTCTCCA
CTCCATCGATGTTCAATGGCGCTCTTGATACCCGAGCAATTCGCTGTATA
TTCCTCTACTCTCGTATGAAAGGTGCAGATCAGTCTACGCTTTATCGGGA
TATCAACCCTCTCATCGCGTGTTATAGAACTACGACGCATTTTGGTCATG
TCCCAGTACGGAGACCTGTGATGCGGTGCAATGGAGTCCCTTCAACCCTT
TTATTGGTCTTGAACCGCTGCATTCCCGCTGTCGGCCTCTCGTGAATTGA
CACGCCACGCTCACCACCACCCTTGAACGACAGCGTCGGGGACTTTCGTC
GCTTAATCACTCCGCAATATATATAGAGAGTGCTGACTAGGGCGCCCCTC
GTTCTGTACATGAAAACTTGGGGGGGGGGTTGCTCTCACAGGGAAACACA
GGATGAAGCGGGCGAGTTTCGGCCGCTTATCGCGAAGACCGACCGTGAAA
GCGTCCTGAGGGGCGAGGACTACTGGATCGACTATCGCGAGGTCAGAGCT
CTGCGATCAAATGAAGATATATCATTTAGGTGCCGTTCAAGTCTCTGCTT
AGGGTGGCTTGAAAGCTCATCGGGGACCATCTACCTACCGAGCTACGTTT
GGCGTTGAGCTGCCAACCTGTATCATTAAACGCGCGCTTGATATATTGTG
TAAGTATAAATCGTTGAGACTCCGAAGAGCTTTGCTTTGTGGGTAGAAAA
CACTCCAGGGTGATGGCGAGGGATGGTAGACGGAATAAAAAAGTACGAGG
TGATAAGAACTGGACGTGATCAGAGTTAAATGTCTCGAATGTGGATCCCG
GACACATCGTCGTCATGCGGCCTTCCAGATCAGACGCGCTCTCACTAGCG
CATCCCGCTGAACGATACAGGAATGCTATTCGCGCAAGGTACGCGGAGGT
TTCCTTCGCAGTATACAATCGTCTCGATATGGTACAAACAATATACCGGT
ATATATATATTGCCTCGGTGAAGGAGCCCTTTACGTAAGGATTTCCACGT
GCCTCGCCCACGAACGCGCGACACACCCAACATTTCTCGTCTTGAAAACG
TATCGTCGCCCTAGTTGGACGCGGCGAGAGCGAGGAAGGTGGCTAAAGCG
AAGGCCCCCGCCCCGGACCAATTCGCGCAGTCCAAAATGAAGGCGGAAAT
AGTGAATCCATACAAGCAAAACTGGATCCTCGTTATCTCCATCGCGATAA
GTAAGGGCCACAATTTTTATTTATATTAACGGTTTTCGTGAATGTACTTT
TGCCTTTTCTGCCTGTCGTGGGGCTTGGGAGTTGCTCACAATATATCCCA
CGAGACGTAGCGCTAAGCCCAGCGTATGCGGGCACGTACCACCGACTGGC
CTTGAGACTCCTCGTGGGACAATGAAAAATGTCTCTGAACGAATTAGCTA
TGAATCTACTTACTGTGATTCAACGCTGAACAGGTAGAACTACACTTCGC
GAAGAGCAATACACCCATATTTCACCCCTTCTGACGCGCCGACTTTCGGT
CAGAGCACGCCGCCCCATCCTGATTTTCAGGAGTAAGCGCACCCAGCGGT
TGCGTACACCGTACGCGTCCCAGGACGACGCAACCAAGAAAGAAAGCCAG
CTGTTTGGGCTGTAGTCCGTCATGGTGCCTGCCGACGATGCTAGGCATCC
GCTCGTTGTGCGTTGACTACTGTTCCGCGTGAACTATCTACTGTGGGACA
TACTATATCAGTTTCCCGGGAAGGTCATCGGTAAGTTATCCCCCCCACAT
ATCCACCCACACCCATGCCCTCAAACTGGTGTGTTTTCTCATCCTCGTGC
ACATCTCCGTTTTCTCTCTTTGCGCCTTCTCGCCTACAAACAGCGGCGAT
GGCAGCGTTCATCAGGATCAATCCAGACGTCCTGAACGATGCCGCCATCA
GCACCTTCCCAACCGAGCTCTGAAGCGGGTCACAAAAGCCCCCGCGCCCT
ACAGTACCGAACTGTCCCGTACCCCCGTCCAGCGGCTAGCCTTACCGACG
TCCCTTGTTCCATCTGCCTTTTTTACAGTTGCCGGGCAGCGGAGAGCCGG
AACACGCCTCTGTAGTCTACTTGGGCTTTGAATCGAACAAAATAACACGT
CTCTCTTAGCTGTAGCGCATAACGGATTCCAGTAATCTGATACCAAGCGC
GCGGGCTTCGTCCCGATTTGTTTTTACGCTGTCCGTGTCGAGGATCTAGG
ATCGCGGTTCCCAAATGTTGCGGCATCGTCCTCGTGCAAAAATAATAATT
TCGGCTTCGTCGGCTTCTGGTTAGGGGAGGGTGAATGAAAAGAATCACAG
AGTTGGGGGGTGGTTCGTGGCGGTCGGTTGCATGAAATCTTTCATGTCTA
GGCGAGCGCCTTGAAAAAATGTATTGAAAGTGCTTTTCTTGCTGGGAGAC
TGGAGATGAGAGTGGGTTTCGGTAGGAAGTATGAAATTTCTTGCCTTTCT
GCTGGAGATATTCTTAGTGGTTCGTATCCGTTGACATGATTAGAACGTAC
AGGAAATCCAATTATTAATAGATGGATTTCATATGAAACAGCGCGACGAG
ATGGAGCACGAGACGATGGGCGCCTGACTTTGTGGTATGAGAGCTAGAAG
ATTCCGTGCTAAACCCCTCCCCCCTCCCCACCTAATGGTAGTACAGAAAG
TGTACGAAGACACTTGATTTTAGTGTGTGTACCAGCGGCTGCAGAATGAT
TGTACCCTCCCTGCGAACGCGAGCGCGAGCGCGACCCCGTTCCACCCGTC
TTGAGCGTGGGCTGCTTGCTGGAGGTCAATTAAGCGACGGATGTATGATC
CGCACATCCTGAAAGTTTGCGATGATTGTTCGGCGTTGAGGAGCTGCGAG
CCAGATGAAACAATCCTCAAGCGATGAACGAGTTCTGTTTGTATGTTAAT
TTCGCTGGAGCTAGTAGCTACTGCTCATTTTTGACTCGTGCTGAAACCAA
GCAGAGCGACAACGGCGTCGAGCTCTTTGATTTGCCCTTTATAGATCAGA
TCGTCGTCAACCGAATATAGATCGTGGAAGGCATATTCCTGCAGTCGTTG
AAAGCCCTAAACGATCGAGTTGTTGGCTCGCGGCACGTTATCTCAACATA
CTTGGCTAGTATTTTTTAGTGTATCCTTGAACGCGCATGGCCTAAGGGTA
GAGCACCTCAAAATGCCTTTCACAAGATGTAAAGTGCTAATTACCCAGGG
TTGACCAAGGGGAATCCAAATCACCGCTGTTTGACACTTTTGTCCTTAGC
AATGTACAAATATGATTACGATCATAAAAAAGCAGAGAAAAACTTTCCTT
AAATTTGGGATCGCTGGGAGCTTTGTGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig17128:1144..5225+

>mRNA_H-elongata_contig17128.4397.1 ID=mRNA_H-elongata_contig17128.4397.1|Name=mRNA_H-elongata_contig17128.4397.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig17128:1144..5225+ (Himanthalia elongata Himel1 dioecious)
ATGGCCCTGAGCGAGGAAACCGAAGATGGCCCTGAGCGAGGAAACCGAAG
CGTCGAGCTCCTCCGCGTCTTCGGACATTGAATCGACCGTTGGAAACCTC
AGTCTACGTGAATCGCCACTCGAAGCGAACATAAACCAACCGAGAAGAGC
GGAGCCACCCCCGAGTGTAGAGGCGTTCCAGACGACCAATCAACGTCGCC
GGGCTCGTCCCCTCAGCCAATTGAAACGCGTCAAACCCAAGAACAGGAGC
GTCGAGCTCCTCCGCGTCTTCGGACATTGAATCGACCGTTGGAAACCTCA
GTCTACGTGAATCGCCACTCGAAGCGAACATAAACCAACCGAGAAGAGCG
GAGCCACCCCCGAGTGTAGAGGCGTTCCAGACGACCAATCAACGTCGCCG
GGCTCGTCCCCTCAGCCAATTGAAACGCGTCAAACCCAAGAACAGGAGGG
AAACACAGGATGAAGCGGGCGAGTTTCGGCCGCTTATCGCGAAGACCGAC
CGTGAAAGCGTCCTGAGGGGCGAGGACTACTGGATCGACTATCGCGAGGG
AAACACAGGATGAAGCGGGCGAGTTTCGGCCGCTTATCGCGAAGACCGAC
CGTGAAAGCGTCCTGAGGGGCGAGGACTACTGGATCGACTATCGCGAGTT
GGACGCGGCGAGAGCGAGGAAGGTGGCTAAAGCGAAGGCCCCCGCCCCGG
ACCAATTCGCGCAGTCCAAAATGAAGGCGGAAATAGTGAATCCATACAAG
CAAAACTGGATCCTCGTTATCTCCATCGCGATAATTGGACGCGGCGAGAG
CGAGGAAGGTGGCTAAAGCGAAGGCCCCCGCCCCGGACCAATTCGCGCAG
TCCAAAATGAAGGCGGAAATAGTGAATCCATACAAGCAAAACTGGATCCT
CGTTATCTCCATCGCGATAACGGCGATGGCAGCGTTCATCAGGATCAATC
CAGACGTCCTGAACGATGCCGCCATCAGCACCTTCCCAACCGAGCTCTGA
CGGCGATGGCAGCGTTCATCAGGATCAATCCAGACGTCCTGAACGATGCC
GCCATCAGCACCTTCCCAACCGAGCTCTGA
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