mRNA_H-elongata_contig171261.4396.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171261.4396.1
Unique NamemRNA_H-elongata_contig171261.4396.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: A0A6H5KE00_9PHAE (YTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE00_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.970e-10
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   28 EQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQ-RSRQQQQPPG 159
            EQGLQ+LKAFH HK+ TSIVDD++FYENRA+ +Q R + Q Q  G
Sbjct: 1060 EQGLQMLKAFHEHKHVTSIVDDYAFYENRAMQHQHRPKHQHQQHG 1104
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BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: D7G0F3_ECTSI (Putative RNA-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F3_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.870e-9
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   28 EQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQ-RSRQQQQPPG 159
            EQGLQ+LKAFH H + TSIVDD++FYENRA+ +Q R + Q Q  G
Sbjct:  485 EQGLQMLKAFHEHTHVTSIVDDYAFYENRALQHQHRPKHQHQQHG 529
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BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: C5X154_SORBI (YTH domain-containing protein n=9 Tax=Panicoideae TaxID=147369 RepID=C5X154_SORBI)

HSP 1 Score: 54.3 bits (129), Expect = 5.240e-7
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    1 SLEKKELLREQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQPPGVFGGMI 177
            S + +E+  EQGL++LK F  H   TSI+DDFSFYENR  + Q  R +QQ     GG +
Sbjct:  555 SRDTQEVKLEQGLEMLKIFKEHVTKTSILDDFSFYENRQKLMQEKRAKQQLLQGQGGDV 613
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BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: A0A8J6C2P2_ZIZPA (YTH domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J6C2P2_ZIZPA)

HSP 1 Score: 52.8 bits (125), Expect = 1.820e-6
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   28 EQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQ 150
            EQG+Q+LK F  H + TSI+DDF+FYENR  + Q  R +QQ
Sbjct:  299 EQGIQMLKIFKEHVSKTSILDDFTFYENRQKLMQEKRVKQQ 339
[Close]
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: A0A3B6LUU4_WHEAT (YTH domain-containing protein n=34 Tax=Triticeae TaxID=147389 RepID=A0A3B6LUU4_WHEAT)

HSP 1 Score: 51.6 bits (122), Expect = 4.680e-6
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 SLEKKELLREQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQ 150
            S + +E+  EQGLQ+LK F  H + TSI+DDFSFY+NR  + Q  + Q+Q
Sbjct:  497 SRDTQEVKLEQGLQVLKIFKDHVSKTSILDDFSFYDNREKIMQERKSQRQ 546
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BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: D3G8A6_LOLPR (YTH domain family protein YT521-B-like protein (Fragment) n=3 Tax=Lolium TaxID=4520 RepID=D3G8A6_LOLPR)

HSP 1 Score: 50.8 bits (120), Expect = 8.190e-6
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   28 EQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQ 150
            EQG+Q+LK F  H + TSI++DF+FYENR  + Q  R +QQ
Sbjct:  154 EQGVQMLKIFKEHVSKTSILEDFTFYENRQKLMQEKRVKQQ 194
[Close]
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: F2DAP2_HORVV (Predicted protein (Fragment) n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2DAP2_HORVV)

HSP 1 Score: 50.8 bits (120), Expect = 8.350e-6
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   28 EQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQ 150
            EQG+Q+LK F  H + TSI++DF+FYENR  + Q  R +QQ
Sbjct:  162 EQGIQMLKIFKEHVSKTSILEDFTFYENRQKLMQEKRIKQQ 202
[Close]
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: A0A8J5SD56_ZIZPA (YTH domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SD56_ZIZPA)

HSP 1 Score: 50.8 bits (120), Expect = 8.790e-6
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   28 EQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQ 150
            EQG+Q+L  F  H + TSI+DDF+FYENR  + Q  R +QQ
Sbjct:  566 EQGIQMLNIFKEHVSKTSILDDFTFYENRQKLMQEKRVKQQ 606
[Close]
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: A0A804IXB9_MUSAM ((wild Malaysian banana) hypothetical protein n=3 Tax=Musa TaxID=4640 RepID=A0A804IXB9_MUSAM)

HSP 1 Score: 50.1 bits (118), Expect = 1.650e-5
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 SLEKKELLREQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQ 150
            S + +E+  +QGLQLL+ F  H + TSI+DDFSFYE+R  M Q  R + Q
Sbjct:  560 SRDTQEVKLDQGLQLLRLFKDHVSKTSILDDFSFYEDRQKMMQEKRSKLQ 609
[Close]
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: C5WY21_SORBI (YTH domain-containing protein n=6 Tax=Andropogoneae TaxID=147429 RepID=C5WY21_SORBI)

HSP 1 Score: 49.3 bits (116), Expect = 3.070e-5
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 SLEKKELLREQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQPP 156
            S + +E+  +QGLQ+LK F  H + TSI+DDFSFY++R  + Q  + + Q P
Sbjct:  496 SRDTQEVKLDQGLQVLKIFKDHASKTSILDDFSFYDDREKIMQEKKSKHQHP 547
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KE00_9PHAE3.970e-1064.44YTH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0F3_ECTSI1.870e-962.22Putative RNA-binding protein n=1 Tax=Ectocarpus si... [more]
C5X154_SORBI5.240e-747.46YTH domain-containing protein n=9 Tax=Panicoideae ... [more]
A0A8J6C2P2_ZIZPA1.820e-656.10YTH domain-containing protein n=1 Tax=Zizania palu... [more]
A0A3B6LUU4_WHEAT4.680e-650.00YTH domain-containing protein n=34 Tax=Triticeae T... [more]
D3G8A6_LOLPR8.190e-653.66YTH domain family protein YT521-B-like protein (Fr... [more]
F2DAP2_HORVV8.350e-653.66Predicted protein (Fragment) n=1 Tax=Hordeum vulga... [more]
A0A8J5SD56_ZIZPA8.790e-653.66YTH domain-containing protein n=1 Tax=Zizania palu... [more]
A0A804IXB9_MUSAM1.650e-550.00(wild Malaysian banana) hypothetical protein n=3 T... [more]
C5WY21_SORBI3.070e-544.23YTH domain-containing protein n=6 Tax=Andropogonea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171261contigH-elongata_contig171261:404..586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog2880.D7G0F3
KEGG koko:K20102
GOsGO:0000228,GO:0000288,GO:0000289,GO:0000785,GO:0000790,GO:0000792,GO:0000956,GO:0001672,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010638,GO:0010847,GO:0016070,GO:0016071,GO:0016604,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031445,GO:0031554,GO:0031935,GO:0031937,GO:0031974,GO:0031981,GO:0032991,GO:0033043,GO:0033044,GO:0033620,GO:0033621,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043243,GO:0043244,GO:0043487,GO:0043488,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051252,GO:0051254,GO:0051445,GO:0051447,GO:0051726,GO:0060255,GO:0060566,GO:0060968,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071030,GO:0071031,GO:0071704,GO:0080090,GO:0090052,GO:0090053,GO:0090304,GO:0097157,GO:0097159,GO:0110064,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902275,GO:1902680,GO:1902801,GO:1903311,GO:1903506,GO:1903508,GO:1904594,GO:1904595,GO:1905269,GO:1905762,GO:1990251,GO:1990342,GO:1990904,GO:2000112,GO:2000241,GO:2000242,GO:2001141,GO:2001252
EggNOG free text desc.N6-methyladenosine-containing RNA binding
EggNOG OGsKOG1901@1,KOG1901@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929997.2096012-CDS-H-elongata_contig171261:403..5861622929997.2096012-CDS-H-elongata_contig171261:403..586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171261 404..586 +
1691679239.8600795-CDS-H-elongata_contig171261:403..5861691679239.8600795-CDS-H-elongata_contig171261:403..586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171261 404..586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171261.4396.1prot_H-elongata_contig171261.4396.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171261 404..586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171261.4396.1

>prot_H-elongata_contig171261.4396.1 ID=prot_H-elongata_contig171261.4396.1|Name=mRNA_H-elongata_contig171261.4396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
SLEKKELLREQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQ
PPGVFGGMIV*
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mRNA from alignment at H-elongata_contig171261:404..586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171261.4396.1 ID=mRNA_H-elongata_contig171261.4396.1|Name=mRNA_H-elongata_contig171261.4396.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig171261:404..586+ (Himanthalia elongata Himel1 dioecious)
TCCCTGGAAAAAAAGGAGCTGCTACGCGAGCAGGGCCTGCAACTGCTGAA
GGCCTTTCATAGGCACAAGAACACAACCTCGATCGTGGACGATTTTAGTT
TCTACGAAAACCGAGCAATCATGTACCAGCGGTCCAGGCAGCAGCAGCAG
CCTCCGGGTGTCTTTGGTGGGATGATCGTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig171261:404..586+

>mRNA_H-elongata_contig171261.4396.1 ID=mRNA_H-elongata_contig171261.4396.1|Name=mRNA_H-elongata_contig171261.4396.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig171261:404..586+ (Himanthalia elongata Himel1 dioecious)
TCCCTGGAAAAAAAGGAGCTGCTACGCGAGCAGGGCCTGCAACTGCTGAA
GGCCTTTCATAGGCACAAGAACACAACCTCGATCGTGGACGATTTTAGTT
TCTACGAAAACCGAGCAATCATGTACCAGCGGTCCAGGCAGCAGCAGCAG
CCTCCGGGTGTCTTTGGTGGGATGATCGTCTAGTCCCTGGAAAAAAAGGA
GCTGCTACGCGAGCAGGGCCTGCAACTGCTGAAGGCCTTTCATAGGCACA
AGAACACAACCTCGATCGTGGACGATTTTAGTTTCTACGAAAACCGAGCA
ATCATGTACCAGCGGTCCAGGCAGCAGCAGCAGCCTCCGGGTGTCTTTGG
TGGGATGATCGTCTAG
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