mRNA_H-elongata_contig17108.4388.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17108.4388.1
Unique NamemRNA_H-elongata_contig17108.4388.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17108.4388.1 vs. uniprot
Match: D8LPR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR0_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 3.920e-28
Identity = 70/148 (47.30%), Postives = 92/148 (62.16%), Query Frame = 1
Query:   10 PHVTTLNLDTGEASRGNLLPR--PTTESYDFPQVRGSLLGRKARFGYCAGLGSNHNPNAVVKFDLQVTGTRRIWVIVGRIDLGDSVGGEALFIPSKPNVDVFAGEGEEDDGYLATFVTHQDGSNSGKPI-DGR-YPRDVVCIVQLPDR 441
            P+ TTLNL+T +A+R  L+P+  P TE  DFPQ+R SL+GRK R+GY     +     A+VK DLQ T       +VGRID G+ VGGE LF+PS P+     G G+EDDG+L TFV+ +DG NS   + D +    D V  V+LP R
Sbjct:  366 PYTTTLNLETSKATRACLVPQSQPPTEGLDFPQIRKSLVGRKNRYGYFIAFDAGGLAAALVKIDLQATPET---AVVGRIDHGEWVGGEGLFVPSNPD-----GVGDEDDGFLVTFVSPKDGGNSELRVWDAKTMSPDPVASVKLPAR 505          
BLAST of mRNA_H-elongata_contig17108.4388.1 vs. uniprot
Match: D8LGA2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA2_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.870e-26
Identity = 74/162 (45.68%), Postives = 94/162 (58.02%), Query Frame = 1
Query:    4 PYPHVTTLNLDTGEASRGNLLP-RPTTESYDFPQVRGSLLGRKARFGYCAGLGSNHNPNAVVKFDLQVTGTRRIWVIVGRIDLGDS-VGGEALFIPSKPNVDVFAG-----------EGEEDDGYLATFVTHQDGSNSG--KPIDGR-YPRDVVCIVQLPDR 441
            P+ H   LNLDTGE  R ++LP +P +E  DFPQ+R SL+GRK RFGYC    S  +  A +K DLQ    +     VGRID  D  VGGE +FIPSKP  D  AG           EG EDDGYLATFV+ +DG+ +   +  + +    + V IV+LP R
Sbjct:  371 PFLHTVILNLDTGEVIRYSVLPEKPFSEGMDFPQLRRSLVGRKNRFGYCTTFNSKGDAAAELKVDLQAA--KPELAQVGRIDYEDGFVGGECIFIPSKP--DDHAGHDGDSDSDGELEGGEDDGYLATFVSRKDGTGNSELRVFNAKTMSSEPVAIVKLPAR 528          
BLAST of mRNA_H-elongata_contig17108.4388.1 vs. uniprot
Match: D8LGA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA3_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 5.180e-26
Identity = 71/151 (47.02%), Postives = 91/151 (60.26%), Query Frame = 1
Query:   13 HVTTLNLDTGEASRGNLLP--RPTTESYDFPQVRGSLLGRKARFGYCAGLGSNHNPNAVVKFDLQVTGTRRIWVIVGRIDLGDS-VGGEALFIPSKPNVDVFAGE--GEEDDGYLATFVTHQDGSNSG--KPIDGRYPR-DVVCIVQLPDR 441
            H  TLNLDTGE +R ++LP  R  +E  DFPQ+R SL+GRK RFGYC  +    +  A  K DLQ    ++  V  GRID  D  VGGE +FIPSKP+     GE  G EDDGYLATFV+ +DG+ +   +  D +    + V  V+LP R
Sbjct:  374 HTVTLNLDTGEVTRESVLPSSRTLSEGMDFPQLRRSLVGRKNRFGYCTVMDMKGDAIAEAKIDLQAATPKQAQV--GRIDYEDGFVGGECIFIPSKPDDGDGDGELAGGEDDGYLATFVSRKDGTGTSELRVFDAKTMNSEPVAAVKLPAR 522          
BLAST of mRNA_H-elongata_contig17108.4388.1 vs. uniprot
Match: A0A6H5KGR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGR7_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.010e-25
Identity = 70/141 (49.65%), Postives = 83/141 (58.87%), Query Frame = 1
Query:    4 PYPHVTTLNLDTGEASRGNLLP-RPTTESYDFPQVRGSLLGRKARFGYCAGLGSNHNPNAVVKFDLQVTGTRRIWVIVGRIDLGDS-VGGEALFIPSKPNVDVFAG-----------EGEEDDGYLATFVTHQDGS-NSGK 384
            P+ H   L LDTGE  R ++LP +P  E  DFPQ+R SL+GRK RFGYC    S  +  A VK DLQ    +     VGRI   D  VGGE +FIPSKP  D  AG           EG EDDGYLATFV+ +DG+ NSG+
Sbjct:  150 PFLHTVILKLDTGEVIRHSVLPEKPFVEGMDFPQLRRSLVGRKNRFGYCTTFNSKGDAAAEVKVDLQAA--KPELAQVGRIAYEDGFVGGECIFIPSKP--DDHAGHDGDNDGDGEPEGGEDDGYLATFVSRKDGTGNSGE 286          
BLAST of mRNA_H-elongata_contig17108.4388.1 vs. uniprot
Match: A0A6H5KSQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSQ0_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 7.920e-24
Identity = 63/127 (49.61%), Postives = 80/127 (62.99%), Query Frame = 1
Query:   13 HVTTLNLDTGEASRGNLLPRPTT--ESYDFPQVRGSLLGRKARFGYCAGLGSNHNPNAVVKFDLQVTGTRRIWVIVGRIDLGDS-VGGEALFIPSKPNVDVFAG--EGEEDDGYLATFVTHQDGSNS 378
            H  TLNLDTGE +R ++LP  +T  +  DFPQ+R SL+GRK RFGYC  +    +  A  K DLQ     +  V  GRI+  D  VGGE +FIPSKP+     G  EG EDDGYLATFV+ +DG+ +
Sbjct:  386 HTVTLNLDTGEVTRESVLPSSSTLLQGMDFPQIRRSLVGRKNRFGYCTIMDMKGDAIAEAKIDLQAATPNKAQV--GRINYEDGFVGGECIFIPSKPDDGDGDGQPEGGEDDGYLATFVSRKDGTGT 510          
BLAST of mRNA_H-elongata_contig17108.4388.1 vs. uniprot
Match: UPI00192A026F (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A026F)

HSP 1 Score: 65.5 bits (158), Expect = 1.330e-9
Identity = 50/145 (34.48%), Postives = 74/145 (51.03%), Query Frame = 1
Query:   25 LNLDTGEASRGNLLPRPTTESYDFPQVRGSLLGRKARFGYCAGLGSNH---NPNAVVKFDLQVTGTRRIWVIVGRIDLGDSV-GGEALFIPSKPNVDVFAGEGEEDDGYLATFVTHQ-DGSNSGKPIDGRYPR-DVVCIVQLPDR 441
            ++L TG+ SR  L      ++ +F  +    +G+K R+GY   LG  H     + VVK D  + GT     +V + + G    GGE  F+P        A EGEEDDGYL ++V ++  G +S   +D R P  ++V  VQLP R
Sbjct:  455 IDLRTGDVSRKPL----AVDNLEFGVIHPGYIGKKNRYGY---LGIGHPMPKISGVVKLDFSLAGTGDC--VVAKREFGQGCYGGEPFFVPEHE-----AEEGEEDDGYLVSYVHNEISGESSFLVMDARSPELEIVAEVQLPVR 585          
BLAST of mRNA_H-elongata_contig17108.4388.1 vs. uniprot
Match: A0A0R2PX94_9ACTN (Dioxygenase (Fragment) n=1 Tax=Acidimicrobium sp. BACL19 MAG-120924-bin39 TaxID=1655566 RepID=A0A0R2PX94_9ACTN)

HSP 1 Score: 62.0 bits (149), Expect = 1.490e-8
Identity = 48/141 (34.04%), Postives = 66/141 (46.81%), Query Frame = 1
Query:   25 LNLDTGEASRGNLLPRPTTESYDFPQVRGSLLGRKARFGYCAGLGSNHNPNAVVKFDLQVTGTRRIWVIVGRIDLGDSVGGEALFIPSKPNVDVFAGEGEEDDGYLATFV--THQDGSNSGKPIDGRYPRDVVCIVQLPDR 441
            LN  TG      +  RP     +FP++R SL+GRK RFGYCAG+G+    + + K D  +TG      ++ R D      GE +F+P        AG   EDDG++      TH D S+           D V +V LP R
Sbjct:  163 LNPTTGAFRETVISDRPQ----EFPRIRESLIGRKYRFGYCAGIGAGFAQDTLTKVD-HLTGG-----VIARSDQPRFGYGEPVFVPR-------AGGTAEDDGWVMALRHDTHSDTSDLAMFDAQALDDDPVAVVHLPVR 286          
BLAST of mRNA_H-elongata_contig17108.4388.1 vs. uniprot
Match: A0A2G5CHZ6_AQUCA (Uncharacterized protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5CHZ6_AQUCA)

HSP 1 Score: 62.0 bits (149), Expect = 2.120e-8
Identity = 47/141 (33.33%), Postives = 68/141 (48.23%), Query Frame = 1
Query:   25 LNLDTGEASRGNLLPRPTTESYDFPQVRGSLLGRKARFGYCAGLGSNHNPNAVVKFDLQVTGTRRIWVIVGRIDLGDSVGGEALFIPSKPNVDVFAGEGEEDDGYLATFVTHQDGSNSGKPI-DGRYPR-DVVCIVQLPDR 441
            +NL TG  +R  +    +T++ DF  +  +  GRK ++GY A        + VVK D    G R       R+      GGE  F+P   +    A  GEEDDGYL T+V  ++ S S   + D + P  D+V  V+LP R
Sbjct:  420 INLKTGMVTRSPI----STKNLDFGVINPAFAGRKNKYGYAAVGDPMPKISGVVKLDWSSKGGREAGC---RMFGSGCYGGEPFFVPKSNDP---ASMGEEDDGYLVTYVHDENSSESRFLVMDAKSPTLDIVASVKLPRR 550          
BLAST of mRNA_H-elongata_contig17108.4388.1 vs. uniprot
Match: UPI0019299C7B (zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplastic-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0019299C7B)

HSP 1 Score: 56.6 bits (135), Expect = 1.580e-6
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 1
Query:   25 LNLDTGEASRGNLLPRPTTESYDFPQVRGSLLGRKARFGYCAGLGSNHNP-NAVVKFDLQVTGTRRIWVIVGRIDLG-DSVGGEALFIPSKPNVDVFAGEGEEDDGYLATFVTHQDGSNSGKPI--DGRYPR-DVVCIVQLPDR 441
            + +++G+ +R  + P    E+ +F  V    +GR+ R+ Y AG+ + H   + VVK DL+  G      +VGR + G +   GE  F+P+K       G GEEDDGYL T+V H +     + +  D   P  +VV  V LP R
Sbjct:  410 IYVNSGKVTRTVISP----ENLEFGSVNQEYVGRRNRYVY-AGVAAPHPKISGVVKVDLEGGG------VVGRREFGLECYAGEPCFVPAKKG----EGGGEEDDGYLVTYV-HDERKEESRFVVMDASSPELEVVTEVALPRR 537          
BLAST of mRNA_H-elongata_contig17108.4388.1 vs. uniprot
Match: A0A8B8LUF0_ABRPR (probable carotenoid cleavage dioxygenase 4, chloroplastic n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8LUF0_ABRPR)

HSP 1 Score: 55.5 bits (132), Expect = 4.000e-6
Identity = 45/141 (31.91%), Postives = 65/141 (46.10%), Query Frame = 1
Query:   25 LNLDTGEASRGNLLPRPTTESYDFPQVRGSLLGRKARFGYCAGLGSNHNPNAVVKFDLQVTGTRRIWVIVGRIDLGDSVGGEALFIPSKPNVDVFAGEGEEDDGYLATFV-THQDGSNSGKPIDGRYPR-DVVCIVQLPDR 441
            ++LDTG  +R  +  R    + DF  +  + LG+K RF Y A          VVK D+     +R   +  R+      GGE  F+  +         GEEDDGYL +FV   + G +    +D + P  DVV  V+LP R
Sbjct:  432 IDLDTGIVTRQPVSAR----NLDFAVINQAFLGKKNRFVYAAVGDPMPKITGVVKLDVSRGEEKRDCTVGCRMYGEGCYGGEPFFVAREEG-------GEEDDGYLVSFVHDEKKGESRFLVMDAKSPELDVVATVKLPRR 561          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17108.4388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LPR0_ECTSI3.920e-2847.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGA2_ECTSI3.870e-2645.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGA3_ECTSI5.180e-2647.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGR7_9PHAE5.010e-2549.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSQ0_9PHAE7.920e-2449.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00192A026F1.330e-934.489-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
A0A0R2PX94_9ACTN1.490e-834.04Dioxygenase (Fragment) n=1 Tax=Acidimicrobium sp. ... [more]
A0A2G5CHZ6_AQUCA2.120e-833.33Uncharacterized protein n=2 Tax=Thalictroideae Tax... [more]
UPI0019299C7B1.580e-633.33zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]
A0A8B8LUF0_ABRPR4.000e-631.91probable carotenoid cleavage dioxygenase 4, chloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17108contigH-elongata_contig17108:6402..6956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue1.1e-24
Seed eggNOG ortholog2880.D8LPR0
Preferred nameCCD1
KEGG koko:K00465,ko:K11159
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005911,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008300,GO:0009056,GO:0009506,GO:0009987,GO:0010436,GO:0012505,GO:0016020,GO:0016042,GO:0016108,GO:0016110,GO:0016115,GO:0016116,GO:0016118,GO:0016119,GO:0016121,GO:0016122,GO:0016124,GO:0016491,GO:0016701,GO:0016702,GO:0030054,GO:0031090,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045549,GO:0046247,GO:0051213,GO:0055044,GO:0055114,GO:0071704,GO:0071944,GO:0098588,GO:0098805,GO:1901575
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGsCOG3670@1,KOG1285@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929996.0541358-CDS-H-elongata_contig17108:6401..66171622929996.0541358-CDS-H-elongata_contig17108:6401..6617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17108 6402..6617 -
1691679239.3868356-CDS-H-elongata_contig17108:6401..66171691679239.3868356-CDS-H-elongata_contig17108:6401..6617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17108 6402..6617 -
1622929996.071535-CDS-H-elongata_contig17108:6731..69561622929996.071535-CDS-H-elongata_contig17108:6731..6956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17108 6732..6956 -
1691679239.4057484-CDS-H-elongata_contig17108:6731..69561691679239.4057484-CDS-H-elongata_contig17108:6731..6956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17108 6732..6956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17108.4388.1prot_H-elongata_contig17108.4388.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17108 6402..6956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17108.4388.1

>prot_H-elongata_contig17108.4388.1 ID=prot_H-elongata_contig17108.4388.1|Name=mRNA_H-elongata_contig17108.4388.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
RPYPHVTTLNLDTGEASRGNLLPRPTTESYDFPQVRGSLLGRKARFGYCA
GLGSNHNPNAVVKFDLQVTGTRRIWVIVGRIDLGDSVGGEALFIPSKPNV
DVFAGEGEEDDGYLATFVTHQDGSNSGKPIDGRYPRDVVCIVQLPDR
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mRNA from alignment at H-elongata_contig17108:6402..6956-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17108.4388.1 ID=mRNA_H-elongata_contig17108.4388.1|Name=mRNA_H-elongata_contig17108.4388.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=555bp|location=Sequence derived from alignment at H-elongata_contig17108:6402..6956- (Himanthalia elongata Himel1 dioecious)
CGTCCCTACCCGCATGTGACCACTCTCAATCTGGACACCGGGGAGGCTTC AAGGGGGAATCTCCTGCCCAGGCCAACGACTGAAAGCTACGACTTCCCGC AAGTCCGTGGGTCCTTACTGGGAAGAAAGGCCAGGTTCGGCTACTGCGCG GGACTCGGCAGCAACCATAACCCGAATGCAGTGGTGAAATTCGACCTTCA GGTGACAGGGACGCGTCGGATATGGGTTTAAGAAATATTAATCACATCGA TGACAACAACATGGAAGTGATTTTAACCGAATAAACAACTTATTATGTAT GACACACCGTGCGGGTCACAGGCGGTGACTCCTGAAGAGGTTATCGTAGG TCGCATTGACCTCGGGGATTCGGTTGGCGGCGAGGCACTTTTCATCCCCT CCAAGCCCAATGTCGATGTGTTTGCCGGGGAAGGAGAGGAGGATGATGGC TACCTGGCGACGTTCGTCACTCACCAGGATGGCAGCAACTCAGGCAAGCC TATCGACGGGCGATATCCCCGTGACGTAGTATGTATTGTCCAGCTCCCGG ACAGA
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Coding sequence (CDS) from alignment at H-elongata_contig17108:6402..6956-

>mRNA_H-elongata_contig17108.4388.1 ID=mRNA_H-elongata_contig17108.4388.1|Name=mRNA_H-elongata_contig17108.4388.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig17108:6402..6956- (Himanthalia elongata Himel1 dioecious)
CGTCCCTACCCGCATGTGACCACTCTCAATCTGGACACCGGGGAGGCTTC
AAGGGGGAATCTCCTGCCCAGGCCAACGACTGAAAGCTACGACTTCCCGC
AAGTCCGTGGGTCCTTACTGGGAAGAAAGGCCAGGTTCGGCTACTGCGCG
GGACTCGGCAGCAACCATAACCCGAATGCAGTGGTGAAATTCGACCTTCA
GGTGACAGGGACGCGTCGGATATGGCGTCCCTACCCGCATGTGACCACTC
TCAATCTGGACACCGGGGAGGCTTCAAGGGGGAATCTCCTGCCCAGGCCA
ACGACTGAAAGCTACGACTTCCCGCAAGTCCGTGGGTCCTTACTGGGAAG
AAAGGCCAGGTTCGGCTACTGCGCGGGACTCGGCAGCAACCATAACCCGA
ATGCAGTGGTGAAATTCGACCTTCAGGTGACAGGGACGCGTCGGATATGG
GTTATCGTAGGTCGCATTGACCTCGGGGATTCGGTTGGCGGCGAGGCACT
TTTCATCCCCTCCAAGCCCAATGTCGATGTGTTTGCCGGGGAAGGAGAGG
AGGATGATGGCTACCTGGCGACGTTCGTCACTCACCAGGATGGCAGCAAC
TCAGGCAAGCCTATCGACGGGCGATATCCCCGTGACGTAGTATGTATTGT
CCAGCTCCCGGACAGAGTTATCGTAGGTCGCATTGACCTCGGGGATTCGG
TTGGCGGCGAGGCACTTTTCATCCCCTCCAAGCCCAATGTCGATGTGTTT
GCCGGGGAAGGAGAGGAGGATGATGGCTACCTGGCGACGTTCGTCACTCA
CCAGGATGGCAGCAACTCAGGCAAGCCTATCGACGGGCGATATCCCCGTG
ACGTAGTATGTATTGTCCAGCTCCCGGACAGA
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