mRNA_H-elongata_contig170982.4382.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170982.4382.1
Unique NamemRNA_H-elongata_contig170982.4382.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig170982.4382.1 vs. uniprot
Match: A0A6H5KJV3_9PHAE (PsbP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV3_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.670e-34
Identity = 62/85 (72.94%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:    1 PDAGKEWELLDAFEDTRKPGGLVYQFEYRVKGKGLRAPMHNVSVVAARGPTLFTVTVLAPETSWGG--GREEEFRLMAKSFRLTF 249
            PD+G+EWEL +AFED R+PGGLVYQFEYR++G+ +R PM NV VVAARG TLFTVTVLAPE SWGG  GR E+FR MA SFRL F
Sbjct:  519 PDSGREWELFEAFEDNREPGGLVYQFEYRIQGQRIRKPMRNVGVVAARGSTLFTVTVLAPEESWGGKGGRGEKFRQMANSFRLAF 603
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BLAST of mRNA_H-elongata_contig170982.4382.1 vs. uniprot
Match: D8LPY6_ECTSI (PsbP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY6_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.830e-33
Identity = 62/85 (72.94%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:    1 PDAGKEWELLDAFEDTRKPGGLVYQFEYRVKGKGLRAPMHNVSVVAARGPTLFTVTVLAPETSWGG--GREEEFRLMAKSFRLTF 249
            P +G+EWELL+AFED R+PGGLVYQFEYRV+G+ +R PM NV VVAARG TLFTVTVLAPE SWGG  GR E+FR MA SFRL +
Sbjct:  423 PGSGREWELLEAFEDNREPGGLVYQFEYRVQGQRIRKPMRNVGVVAARGSTLFTVTVLAPEESWGGKGGRGEKFRQMANSFRLAW 507
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BLAST of mRNA_H-elongata_contig170982.4382.1 vs. uniprot
Match: A0A7S2V6V0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6V0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.020e-21
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:    1 PDAGKEWELLDAFEDTRKPGGLVYQFEYRVKGKGLRAPMHNVSVVAARGPTLFTVTVLAPETSWGGGREEEFRLMAKSFRLTF 249
            P +GKEW LL+AFE+ R PG LVYQFEY +K    +  +HN+ VV AR   L+T+ VLAPE  W G +++E   +A SF+LTF
Sbjct:   88 PGSGKEWTLLNAFEEVRGPGYLVYQFEYIIKTS--KVELHNIGVVTARNNNLYTLIVLAPENEWFGQKQKELSQVASSFQLTF 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170982.4382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJV3_9PHAE3.670e-3472.94PsbP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LPY6_ECTSI1.830e-3372.94PsbP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2V6V0_9STRA1.020e-2151.81Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170982contigH-elongata_contig170982:247..1130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue1e-27
Seed eggNOG ortholog2880.D8LPY6
Preferred namePSBP5
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0009579,GO:0031977,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044436,GO:0044444,GO:0044464
EggNOG free text desc.PsbP domain-containing protein 7 chloroplastic
EggNOG OGs28JMB@1,2QS0I@2759
COG Functional cat.S
BiGG ReactioniRC1080.CRv4_Au5_s2_g9294_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.4884434-CDS-H-elongata_contig170982:246..3391622929995.4884434-CDS-H-elongata_contig170982:246..339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170982 247..339 +
1691679239.1606007-CDS-H-elongata_contig170982:246..3391691679239.1606007-CDS-H-elongata_contig170982:246..339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170982 247..339 +
1622929995.5034413-CDS-H-elongata_contig170982:971..11301622929995.5034413-CDS-H-elongata_contig170982:971..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170982 972..1130 +
1691679239.1811368-CDS-H-elongata_contig170982:971..11301691679239.1811368-CDS-H-elongata_contig170982:971..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170982 972..1130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170982.4382.1prot_H-elongata_contig170982.4382.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170982 247..1130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170982.4382.1

>prot_H-elongata_contig170982.4382.1 ID=prot_H-elongata_contig170982.4382.1|Name=mRNA_H-elongata_contig170982.4382.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
PDAGKEWELLDAFEDTRKPGGLVYQFEYRVKGKGLRAPMHNVSVVAARGP
TLFTVTVLAPETSWGGGREEEFRLMAKSFRLTF*
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mRNA from alignment at H-elongata_contig170982:247..1130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170982.4382.1 ID=mRNA_H-elongata_contig170982.4382.1|Name=mRNA_H-elongata_contig170982.4382.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=884bp|location=Sequence derived from alignment at H-elongata_contig170982:247..1130+ (Himanthalia elongata Himel1 dioecious)
CCCGACGCAGGGAAAGAGTGGGAGCTTCTCGACGCTTTTGAAGACACGAG
GAAGCCTGGAGGTCTTGTCTACCAATTCGAGTACCGCGTTAAGGTAACAG
TGCTTGTTCCTGCTCGCACGTGAAGCACACACATTCTGTACATACATACC
TGTCGTCCGCTGTGCTTTGGGAAGACTGAAAAGATAAATAAACAAAAAAT
AAGATAATAAAAACAAAACAAATAAGGAAACCAAACAAAACCAAACTAAA
CTAAACTAATAAAAAAACAAATAAGGAAACCAAAACAAAACAAAACAAAC
CAAACCAAACCAAGCTAAAGTAGACAAAAAAACAAATGAGGAAAACAAAA
CAAAGCAATAGACATGTATTTTATTTCGTGAGGTGGATCGCACGAGGTTT
TCTTTTTTTATCTCCAGACGCCCAAAGTAGTAATGGTGTAAATCCGTCAC
GCCTAAAGAGAAGAGTAAAAATACAGGCGCGTGCGTGTTGTTGTTGTTGT
TCGTGACGAGCTTATTTTTATGAAAATAACAATCTTTGATTTTACTGATT
TCAAAAAAAAAGAAAAGAAAAAAGAAAGTAGAGTGTAATTCTCTATCACG
ATGGAATCCAATTCAAAGGGTAAAATCGTAAAAGGCTTACGCTCTCTTTG
TTTCACATTTGAAAAACGCCTCTTTCACCCCCAATTTACTGCGTGGATAC
GCCGCGCCTGATCGAACTCCTATAGGGAAAAGGCCTGCGAGCTCCGATGC
ATAACGTGAGCGTCGTTGCTGCTCGCGGGCCCACGCTCTTCACCGTAACC
GTGCTCGCTCCGGAGACCAGCTGGGGAGGTGGGCGAGAGGAGGAGTTCCG
GCTCATGGCAAAGAGTTTCCGGCTGACATTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig170982:247..1130+

>mRNA_H-elongata_contig170982.4382.1 ID=mRNA_H-elongata_contig170982.4382.1|Name=mRNA_H-elongata_contig170982.4382.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig170982:247..1130+ (Himanthalia elongata Himel1 dioecious)
CCCGACGCAGGGAAAGAGTGGGAGCTTCTCGACGCTTTTGAAGACACGAG
GAAGCCTGGAGGTCTTGTCTACCAATTCGAGTACCGCGTTAAGCCCGACG
CAGGGAAAGAGTGGGAGCTTCTCGACGCTTTTGAAGACACGAGGAAGCCT
GGAGGTCTTGTCTACCAATTCGAGTACCGCGTTAAGGGAAAAGGCCTGCG
AGCTCCGATGCATAACGTGAGCGTCGTTGCTGCTCGCGGGCCCACGCTCT
TCACCGTAACCGTGCTCGCTCCGGAGACCAGCTGGGGAGGTGGGCGAGAG
GAGGAGTTCCGGCTCATGGCAAAGAGTTTCCGGCTGACATTTTAAGGAAA
AGGCCTGCGAGCTCCGATGCATAACGTGAGCGTCGTTGCTGCTCGCGGGC
CCACGCTCTTCACCGTAACCGTGCTCGCTCCGGAGACCAGCTGGGGAGGT
GGGCGAGAGGAGGAGTTCCGGCTCATGGCAAAGAGTTTCCGGCTGACATT
TTAA
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