mRNA_H-elongata_contig170667.4368.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170667.4368.1
Unique NamemRNA_H-elongata_contig170667.4368.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig170667.4368.1 vs. uniprot
Match: D7FWV2_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV2_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.930e-6
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 2 
Query:  362 GLARKLSCSVVSVVFTGVLLILFLQVGLILTAAPDWGSGTDKSMIDLEKENLEKL 526
            GLARKL+CS +S+V    +LIL +QV L LTA  DWG+ T ++MI LE+ NL KL
Sbjct:   22 GLARKLTCSEISIVAAATVLILAIQVALTLTAVDDWGADTREAMIQLEQANLLKL 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170667.4368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWV2_ECTSI2.930e-656.36VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170667contigH-elongata_contig170667:780..1317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size539
Cds size279
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929994.025292-UTR-H-elongata_contig170667:779..10381622929994.025292-UTR-H-elongata_contig170667:779..1038Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig170667 780..1038 +
1691679238.5507474-UTR-H-elongata_contig170667:779..10381691679238.5507474-UTR-H-elongata_contig170667:779..1038Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig170667 780..1038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929994.0376031-CDS-H-elongata_contig170667:1038..13171622929994.0376031-CDS-H-elongata_contig170667:1038..1317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170667 1039..1317 +
1691679238.5581114-CDS-H-elongata_contig170667:1038..13171691679238.5581114-CDS-H-elongata_contig170667:1038..1317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170667 1039..1317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170667.4368.1prot_H-elongata_contig170667.4368.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170667 1039..1317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170667.4368.1

>prot_H-elongata_contig170667.4368.1 ID=prot_H-elongata_contig170667.4368.1|Name=mRNA_H-elongata_contig170667.4368.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MIPQATTTTTTVSGTPHSATDFSDSGEATPVLRKGLARKLSCSVVSVVFT
GVLLILFLQVGLILTAAPDWGSGTDKSMIDLEKENLEKLSSDK
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mRNA from alignment at H-elongata_contig170667:780..1317+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170667.4368.1 ID=mRNA_H-elongata_contig170667.4368.1|Name=mRNA_H-elongata_contig170667.4368.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=538bp|location=Sequence derived from alignment at H-elongata_contig170667:780..1317+ (Himanthalia elongata Himel1 dioecious)
CCGTAGTTGTTTTTTATCAGGCGTTTTTTCCAGCTTATTACTATATCTCT
TCGAAAGGGAAATATTCGCGTCAACTGGAATACTGAGGTCCTTTACTGCA
GCACAGCACGTAACATCGGCGCTGCGGGCAGCAGCCTTCACTACTACTAT
AGTTGATTTTCTTCTGAGGAAGGCTGCGAAGATAGGTGCATTACTTTTTG
TGGCCGATCATTTCATGCAGTAGCTAAGCTCGAGGGGAAAATAACAATAA
ATCAAAATTATGATTCCACAAGCTACAACAACAACAACAACAGTGTCGGG
GACGCCGCACTCAGCCACCGACTTCTCCGATTCCGGTGAAGCAACCCCTG
TCCTCAGGAAGGGTCTTGCGCGTAAGCTCTCATGTTCAGTCGTGTCGGTG
GTCTTCACCGGAGTGTTGCTGATTCTCTTTCTTCAAGTCGGGTTAATCTT
GACTGCCGCGCCGGACTGGGGGAGCGGAACAGACAAAAGCATGATCGACC
TCGAGAAGGAGAACCTGGAGAAGCTTTCCTCCGACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig170667:780..1317+

>mRNA_H-elongata_contig170667.4368.1 ID=mRNA_H-elongata_contig170667.4368.1|Name=mRNA_H-elongata_contig170667.4368.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig170667:780..1317+ (Himanthalia elongata Himel1 dioecious)
ATGATTCCACAAGCTACAACAACAACAACAACAGTGTCGGGGACGCCGCA
CTCAGCCACCGACTTCTCCGATTCCGGTGAAGCAACCCCTGTCCTCAGGA
AGGGTCTTGCGCGTAAGCTCTCATGTTCAGTCGTGTCGGTGGTCTTCACC
GGAGTGTTGCTGATTCTCTTTCTTCAAGTCGGGTTAATCTTGACTGCCGC
GCCGGACTGGGGGAGCGGAACAGACAAAAGCATGATCGACCTCGAGAAGG
AGAACCTGGAGAAGCTTTCCTCCGACAAGATGATTCCACAAGCTACAACA
ACAACAACAACAGTGTCGGGGACGCCGCACTCAGCCACCGACTTCTCCGA
TTCCGGTGAAGCAACCCCTGTCCTCAGGAAGGGTCTTGCGCGTAAGCTCT
CATGTTCAGTCGTGTCGGTGGTCTTCACCGGAGTGTTGCTGATTCTCTTT
CTTCAAGTCGGGTTAATCTTGACTGCCGCGCCGGACTGGGGGAGCGGAAC
AGACAAAAGCATGATCGACCTCGAGAAGGAGAACCTGGAGAAGCTTTCCT
CCGACAAG
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