mRNA_H-elongata_contig17057.4364.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17057.4364.1
Unique NamemRNA_H-elongata_contig17057.4364.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17057.4364.1 vs. uniprot
Match: D7FK91_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK91_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 4.670e-84
Identity = 148/292 (50.68%), Postives = 178/292 (60.96%), Query Frame = 1 
Query:    1 AGDGTKARLSLLYLKRTRENIALIQEAHIASQLYHERRWVIKQAAAVMRTCAYASRKSG-GCSHDKLRMWVSATVVAARPSSR-APEQPLTHPGVRCDRCKSGPLKGSCFRCAAGCHAAQKRGSVVRVPP--GELVVGRG----------------ERRARAGTVKEN-----------------------VGEGSYTLCENCFSRRSSFHPPHPFARLRACLADSRLSGPVLYEAICYDCLFGSLVLVRPLKMCEAV-GKAGSGRAGNADIWALPVRVEASGPLSLYQVRS 744
            AGDG KARLSLL+ +RTR N+  +Q AH+  Q  HERRWV++QAAAVMR CAY SR+ G GC+H KLR+W SA +VA + SSR + E+P +H GVRCDRCK GP+ GSCFRCAAGC A        + PP  G+  V  G                E+ +   T+                           G G YTLCE CF  R  FHPPHPFARLR   A+ RLSGPVLYEA+C DC FGSL+LVRPLK  EA  G  GSG  G  D+WA+PVRV+++GPL L Q R+
Sbjct:   73 AGDGAKARLSLLWQERTRNNVLQLQNAHLLQQREHERRWVLQQAAAVMRRCAYGSRQQGSGCAHTKLRLWTSANLVATKSSSRRSQERPPSHHGVRCDRCKKGPITGSCFRCAAGCTATAVPNDTSKCPPHGGKSGVANGVSRGVRRXXXXXXXXXEKPSPLSTILPRSSGEAPAREERXXXXXXXXXXCGFGNGFYTLCEACFPYRHQFHPPHPFARLRPGFAEPRLSGPVLYEAVCGDCSFGSLILVRPLKAREAAPGDTGSGDGG--DLWAVPVRVDSAGPLPLSQARN 362
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17057.4364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK91_ECTSI4.670e-8450.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17057contigH-elongata_contig17057:4358..7154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003210.1
Exons5
Model size807
Cds size807
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17057.4364.1prot_H-elongata_contig17057.4364.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17057 4358..7154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.7318265-CDS-H-elongata_contig17057:4357..44701622929993.7318265-CDS-H-elongata_contig17057:4357..4470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17057 4358..4470 +
1691679238.4534636-CDS-H-elongata_contig17057:4357..44701691679238.4534636-CDS-H-elongata_contig17057:4357..4470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17057 4358..4470 +
1622929993.7503824-CDS-H-elongata_contig17057:4782..48691622929993.7503824-CDS-H-elongata_contig17057:4782..4869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17057 4783..4869 +
1691679238.4619353-CDS-H-elongata_contig17057:4782..48691691679238.4619353-CDS-H-elongata_contig17057:4782..4869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17057 4783..4869 +
1622929993.7714803-CDS-H-elongata_contig17057:5785..61661622929993.7714803-CDS-H-elongata_contig17057:5785..6166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17057 5786..6166 +
1691679238.4707766-CDS-H-elongata_contig17057:5785..61661691679238.4707766-CDS-H-elongata_contig17057:5785..6166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17057 5786..6166 +
1622929993.786338-CDS-H-elongata_contig17057:6748..69021622929993.786338-CDS-H-elongata_contig17057:6748..6902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17057 6749..6902 +
1691679238.4796946-CDS-H-elongata_contig17057:6748..69021691679238.4796946-CDS-H-elongata_contig17057:6748..6902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17057 6749..6902 +
1622929993.8036954-CDS-H-elongata_contig17057:7082..71541622929993.8036954-CDS-H-elongata_contig17057:7082..7154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17057 7083..7154 +
1691679238.4903944-CDS-H-elongata_contig17057:7082..71541691679238.4903944-CDS-H-elongata_contig17057:7082..7154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17057 7083..7154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17057.4364.1

>prot_H-elongata_contig17057.4364.1 ID=prot_H-elongata_contig17057.4364.1|Name=mRNA_H-elongata_contig17057.4364.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp
AGDGTKARLSLLYLKRTRENIALIQEAHIASQLYHERRWVIKQAAAVMRT
CAYASRKSGGCSHDKLRMWVSATVVAARPSSRAPEQPLTHPGVRCDRCKS
GPLKGSCFRCAAGCHAAQKRGSVVRVPPGELVVGRGERRARAGTVKENVG
EGSYTLCENCFSRRSSFHPPHPFARLRACLADSRLSGPVLYEAICYDCLF
GSLVLVRPLKMCEAVGKAGSGRAGNADIWALPVRVEASGPLSLYQVRSRI
AAGDRDDNRGLAFASENWR
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mRNA from alignment at H-elongata_contig17057:4358..7154+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17057.4364.1 ID=mRNA_H-elongata_contig17057.4364.1|Name=mRNA_H-elongata_contig17057.4364.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2797bp|location=Sequence derived from alignment at H-elongata_contig17057:4358..7154+ (Himanthalia elongata Himel1 dioecious)
GCAGGAGATGGGACCAAGGCTAGGTTGAGTTTGTTATATCTCAAGCGAAC
GAGGGAGAACATCGCCCTGATACAAGAAGCCCATATTGCGAGTCAATTGT
ACCATGAGCGCAGGTGCGGCCGGGCGCACGGTGCTATGCCATTGCAACCT
GTAGAAGGGGTGCACTCGATACCATGCGAATCTCCGATCGCTGTCTCAGC
GGCATCATCTCGCAAGTGAAGCTTTTCTATTTTCTGTTTAATGTTCCATG
TGTTCTCCTTTTTCATTTCTCTAAAGAGCGTAAACGAGTGAGTTTGAACT
GTAACCTTAAAAACGAAGACGAGGGCGTTTTTGTTGGCCTACAAAAGCAA
TGAACGACATCCTCGTGACCTTGTGCCTCGCATCATCCTCGTGACTCGCC
AATGCATGTACTTCTCGTCCTAAAGATGGGTTATCAAGCAAGCGGCGGCT
GTGATGCGGACGTGCGCATACGCTTCTAGAAAGAGCGGCGGGTGCAGTCA
CGATAAGCTCAGGTGACCTCGCCAACATTTAGGGAGGACCCGTAAGCCTA
CGTCCTGGTAGCACATAATTGGAAGCCAAGCCTATGTGCGCTCGAACACT
GCCTATGCAATCATCACAAGGTTGTCCTCCATCTGGTGGCGTGAGCTTAC
CTTTGGTGTGTAGTTCGACAAGGATGGAGGATCAGCGCACCATAGCCTCC
GATACTGTATATACTGTATCACACATGCCCACTGTAGAAATAGTAGGTGA
GGGAAAAGAGACGGTAACAAAAATTGGTCCATGGGGTTTCTTGAATGGGC
TGCATCTGTTACTCGAGCTACCTTGAGGACTGCTGGCTCAGTGCCGGTGG
ACTCTCGGAGGCGAACGCCATCGGTACGCAATTGCGTGACCCGATAAACT
CGGGATTGATGGCTTACGGTAGAGATGGGCACCGTCGCGAAAAATGGGAA
GATCGAAGGATCCCGGGAGTACGCACCAGATTCAGCCTGGGGGTGGAAAA
TTTGCGAAATGACACCGGACGAGACGGCCGAATCCGTCTCGCGAGACAAA
TTTCTAAGGCGCGAACGGGGACAGGGGAAATAATTTTTCCCTGTTTAGCT
TCCCACGGGAAGGATTGACAACCATATACGGTTGATGACCATACACACAC
ACACACACACACGCATTGATCCCCTATTGGGAGGCCCAGAATGACTGTTT
TAATAGCATGACAGGGCCGGATTGCACGGCACATACAGCTCCCCGCCCGC
TTTTATTAGGAGCTTTGCTACTTGGGAAGTACTTAGGTAGGAAAGTAAGG
TATAGCGTTTAACTTGTTCAACCGAAAGCTTTATTTTTCCACCGAACGAG
CAAAGCTTACTCGTGATGGGGAAAGCATCATGGTCGTTGCGCGTGTTCGT
CTAATGCTCCCGCCTCGTGACCATGCAGGATGTGGGTGTCTGCTACCGTG
GTAGCAGCGAGGCCATCATCTCGGGCCCCGGAACAGCCGTTGACCCACCC
CGGGGTGCGATGTGATAGATGTAAATCGGGGCCACTCAAAGGCTCATGCT
TCCGCTGCGCCGCGGGGTGTCACGCCGCGCAGAAGCGCGGCTCGGTTGTT
CGTGTGCCTCCAGGGGAGCTGGTGGTGGGACGTGGGGAACGTAGAGCGCG
CGCGGGTACCGTGAAAGAGAACGTTGGCGAGGGATCTTACACGCTCTGCG
AAAACTGTTTCTCAAGAAGGAGTAGCTTTCACCCTCCGCACCCGTTCGCG
CGGCTTAGGGCTTGCTTGGCGGATTCTCGTCTTTCCGGGCCGGTGCTGTA
CGAAGCTATGTGGGTGAAACCGTCTTTGTGGACGACCTTTCCGCGCGTGT
ATGACTCCAGCGGTCACGGCCGTTGAGACGCCCGTCGTGCTCTTCGAGGT
TTTTCTTTCTAGGGTTATCTCGATCGATTTTCCGAGTAAAGTGACTCGTG
GCACCTCAATCCCGTCTCAGATATTCCGCTAAGATTTCCTATCTTCGTTC
CGTTGCGGTGTGTGTCTATTGCCGTGGAAGGTTTTCCTAGAGAAGGCCGG
TGGTATCTGAACAACGAACCCCTCGCTCACCCTTGCGTGCCCGCGCGCAG
CCAATTTTCCGCGGGCAAGGTCGTGCATCTTGTGCATGTTGCAGTTTGTA
CTTGCATTCAAGTAGCCGCCGCAAATGCCGTTAGAAGTTGTAAACAGGTG
CACTTGTTTTGAAACGCTTCTCCTCTTCTTGAGGAAAAAATCTAACGCCC
GCACCGATCTTGCCTTCAGCTCTTATGTCTCCTCGTTCTATTTTCGTTTC
GCTGCGGTGACTGTCTTATTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTTTTTTTTCTTCTTTTCTTTGTTCGCTGTTCAGATGTTATGA
TTGCTTGTTCGGCTCTCTGGTTCTCGTTCGACCTTTGAAAATGTGTGAGG
CGGTTGGCAAGGCCGGCAGCGGGAGGGCTGGAAACGCTGATATATGGGCT
CTACCCGTGCGCGTCGAGGCATCCGGGCCGTTGTCTCTGTACCAGGTGCG
TTCGTTCCACGCCTATTCACAATGAATGGCGAAAGTATACGCTTTTGTAG
CGAAGAATAAAACCCTGCTCCTGCTTCACGTTAGGGGAGAGTGCCGCCCC
CCTCGTACAGTTTCACGGTAGCTTGTCCCCCTCTCTGCCTTGTGATCTTC
CTCCTTCTTGGCCATTTTCTGACAGGTCAGAAGCCGCATTGCAGCCGGCG
ATCGGGATGACAATCGAGGACTAGCCTTCGCCTCGGAGAACTGGCGA
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Coding sequence (CDS) from alignment at H-elongata_contig17057:4358..7154+

>mRNA_H-elongata_contig17057.4364.1 ID=mRNA_H-elongata_contig17057.4364.1|Name=mRNA_H-elongata_contig17057.4364.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at H-elongata_contig17057:4358..7154+ (Himanthalia elongata Himel1 dioecious)
GCAGGAGATGGGACCAAGGCTAGGTTGAGTTTGTTATATCTCAAGCGAAC
GAGGGAGAACATCGCCCTGATACAAGAAGCCCATATTGCGAGTCAATTGT
ACCATGAGCGCAGGCAGGAGATGGGACCAAGGCTAGGTTGAGTTTGTTAT
ATCTCAAGCGAACGAGGGAGAACATCGCCCTGATACAAGAAGCCCATATT
GCGAGTCAATTGTACCATGAGCGCAGATGGGTTATCAAGCAAGCGGCGGC
TGTGATGCGGACGTGCGCATACGCTTCTAGAAAGAGCGGCGGGTGCAGTC
ACGATAAGCTCAGATGGGTTATCAAGCAAGCGGCGGCTGTGATGCGGACG
TGCGCATACGCTTCTAGAAAGAGCGGCGGGTGCAGTCACGATAAGCTCAG
GATGTGGGTGTCTGCTACCGTGGTAGCAGCGAGGCCATCATCTCGGGCCC
CGGAACAGCCGTTGACCCACCCCGGGGTGCGATGTGATAGATGTAAATCG
GGGCCACTCAAAGGCTCATGCTTCCGCTGCGCCGCGGGGTGTCACGCCGC
GCAGAAGCGCGGCTCGGTTGTTCGTGTGCCTCCAGGGGAGCTGGTGGTGG
GACGTGGGGAACGTAGAGCGCGCGCGGGTACCGTGAAAGAGAACGTTGGC
GAGGGATCTTACACGCTCTGCGAAAACTGTTTCTCAAGAAGGAGTAGCTT
TCACCCTCCGCACCCGTTCGCGCGGCTTAGGGCTTGCTTGGCGGATTCTC
GTCTTTCCGGGCCGGTGCTGTACGAAGCTATGATGTGGGTGTCTGCTACC
GTGGTAGCAGCGAGGCCATCATCTCGGGCCCCGGAACAGCCGTTGACCCA
CCCCGGGGTGCGATGTGATAGATGTAAATCGGGGCCACTCAAAGGCTCAT
GCTTCCGCTGCGCCGCGGGGTGTCACGCCGCGCAGAAGCGCGGCTCGGTT
GTTCGTGTGCCTCCAGGGGAGCTGGTGGTGGGACGTGGGGAACGTAGAGC
GCGCGCGGGTACCGTGAAAGAGAACGTTGGCGAGGGATCTTACACGCTCT
GCGAAAACTGTTTCTCAAGAAGGAGTAGCTTTCACCCTCCGCACCCGTTC
GCGCGGCTTAGGGCTTGCTTGGCGGATTCTCGTCTTTCCGGGCCGGTGCT
GTACGAAGCTATATGTTATGATTGCTTGTTCGGCTCTCTGGTTCTCGTTC
GACCTTTGAAAATGTGTGAGGCGGTTGGCAAGGCCGGCAGCGGGAGGGCT
GGAAACGCTGATATATGGGCTCTACCCGTGCGCGTCGAGGCATCCGGGCC
GTTGTCTCTGTACCAGATGTTATGATTGCTTGTTCGGCTCTCTGGTTCTC
GTTCGACCTTTGAAAATGTGTGAGGCGGTTGGCAAGGCCGGCAGCGGGAG
GGCTGGAAACGCTGATATATGGGCTCTACCCGTGCGCGTCGAGGCATCCG
GGCCGTTGTCTCTGTACCAGGTCAGAAGCCGCATTGCAGCCGGCGATCGG
GATGACAATCGAGGACTAGCCTTCGCCTCGGAGAACTGGCGAGTCAGAAG
CCGCATTGCAGCCGGCGATCGGGATGACAATCGAGGACTAGCCTTCGCCT
CGGAGAACTGGCGA
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