mRNA_H-elongata_contig170383.4357.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170383.4357.1
Unique NamemRNA_H-elongata_contig170383.4357.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig170383.4357.1 vs. uniprot
Match: D7FVK8_ECTSI (Asparagine synthetase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK8_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.210e-20
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 MQNIASALRKRVASCG--AVEGKNIVAFSGGVDSSLVAALVHQTFPNNSLACVGVSAALPVAQLHLARTIASHIG 219
            MQN    LR RV S G  A +GKNIVAFSGGVDSSLVAALVH  FP +S ACVGVS+ALP AQL LAR++A+ IG
Sbjct:    1 MQNTIRTLRARVLSLGTSAADGKNIVAFSGGVDSSLVAALVHHAFPRSSQACVGVSSALPAAQLDLARSVANRIG 75          
BLAST of mRNA_H-elongata_contig170383.4357.1 vs. uniprot
Match: A0A836CNR6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNR6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.530e-18
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 MQNIASALRKRVASCGAVEGKNIVAFSGGVDSSLVAALVHQTFPNNSLACVGVSAALPVAQLHLARTIASHIG 219
            M+++   L++R+ + G + G N+VAFSGGVDSS+VAALVH+ FP+NSLAC+GVS +LP AQ  LA TIA  IG
Sbjct:    1 MRSLIRTLQRRIEAEGTLRGHNLVAFSGGVDSSVVAALVHEVFPSNSLACLGVSPSLPAAQRELAHTIADRIG 73          
BLAST of mRNA_H-elongata_contig170383.4357.1 vs. uniprot
Match: A0A6U0X6F4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0X6F4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.160e-18
Identity = 47/70 (67.14%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   10 IASALRKRVASCGAVEGKNIVAFSGGVDSSLVAALVHQTFPNNSLACVGVSAALPVAQLHLARTIASHIG 219
            + S LRK  A   A  GKNIVAFSGGVDSSLVAALVH+  P +SLAC G+SA+LP AQL LAR +A HIG
Sbjct:    5 VESCLRKIQAIAVAQPGKNIVAFSGGVDSSLVAALVHRVAPASSLACTGISASLPEAQLDLARHVAEHIG 74          
BLAST of mRNA_H-elongata_contig170383.4357.1 vs. uniprot
Match: A0A3R6Z9S3_9STRA (NAD_synthase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6Z9S3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.050e-17
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1
Query:   22 LRKRVASCGAVEGKNIVAFSGGVDSSLVAALVHQTFPNNSLACVGVSAALPVAQLHLARTIASHIG 219
            L  RV   G+ +  NIVA+SGGVDSSLVAALVH+ FP NS+AC+GVSAALP  QL LAR +AS IG
Sbjct:    5 LLARVRQAGSSKHVNIVAYSGGVDSSLVAALVHRVFPENSIACLGVSAALPQDQLLLARNVASAIG 70          
BLAST of mRNA_H-elongata_contig170383.4357.1 vs. uniprot
Match: A0A7S2W2V8_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2V8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.110e-17
Identity = 47/70 (67.14%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   10 IASALRKRVASCGAVEGKNIVAFSGGVDSSLVAALVHQTFPNNSLACVGVSAALPVAQLHLARTIASHIG 219
            + S LRK  A   A  GKNIVAFSGGVDSSLVAALVH+  P +SLAC G+SA+LP AQL LAR +A HIG
Sbjct:    5 VESCLRKIQAIAVAQPGKNIVAFSGGVDSSLVAALVHRVAPASSLACTGISASLPEAQLDLARHVAEHIG 74          
BLAST of mRNA_H-elongata_contig170383.4357.1 vs. uniprot
Match: A0A6G0W843_9STRA (Asparagine synthetase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W843_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.130e-17
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1
Query:   22 LRKRVASCGAVEGKNIVAFSGGVDSSLVAALVHQTFPNNSLACVGVSAALPVAQLHLARTIASHIG 219
            L  RV   G+ +  N+VAFSGGVDSSLVAA+VH+TFP NS+AC+GVSAA+P  QL LAR IA +IG
Sbjct:    5 LLSRVRQTGSTDRLNVVAFSGGVDSSLVAAVVHKTFPENSIACLGVSAAVPADQLDLAREIARYIG 70          
BLAST of mRNA_H-elongata_contig170383.4357.1 vs. uniprot
Match: A0A485LSD2_9STRA (Aste57867_23475 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSD2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.470e-17
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 1
Query:   31 RVASCGAVEGKNIVAFSGGVDSSLVAALVHQTFPNNSLACVGVSAALPVAQLHLARTIASHIG 219
            RV   G+++  N+VA+SGGVDSSLVAA+VH+ FP+NS+AC+GVSAALP  QL +AR +A HIG
Sbjct:    8 RVRQAGSMQHMNVVAYSGGVDSSLVAAIVHRVFPDNSIACLGVSAALPAEQLLVARGVAQHIG 70          
BLAST of mRNA_H-elongata_contig170383.4357.1 vs. uniprot
Match: A0A1V9YX19_9STRA (NAD_synthase domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YX19_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.770e-17
Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 1
Query:   19 ALRKRVASCGAVEGKNIVAFSGGVDSSLVAALVHQTFPNNSLACVGVSAALPVAQLHLARTIASHIG 219
            A+ +RVA  G+ +  N+VAFSGGVDSS+VAALV++ FP NS+AC+GVSAALP  QL LAR IA  IG
Sbjct:    6 AMVERVARAGSAQALNVVAFSGGVDSSVVAALVYEAFPRNSVACLGVSAALPADQLGLARKIAGEIG 72          
BLAST of mRNA_H-elongata_contig170383.4357.1 vs. uniprot
Match: A0A3R6WYC5_9STRA (NAD_synthase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WYC5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.180e-16
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1
Query:   22 LRKRVASCGAVEGKNIVAFSGGVDSSLVAALVHQTFPNNSLACVGVSAALPVAQLHLARTIASHIG 219
            L  RV   G+ +  NIVA+SGGVDSSLVAALVH+ FP NS+AC+GVSAALP  QL LAR +AS IG
Sbjct:    5 LLARVRQAGSSKHVNIVAYSGGVDSSLVAALVHRVFPENSIACLGVSAALPQDQLLLARNVASAIG 70          
BLAST of mRNA_H-elongata_contig170383.4357.1 vs. uniprot
Match: A0A067BQ91_SAPPC (NAD_synthase domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BQ91_SAPPC)

HSP 1 Score: 80.5 bits (197), Expect = 2.320e-16
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   16 SALRKRVASCGAVEGKNIVAFSGGVDSSLVAALVHQTFPNNSLACVGVSAALPVAQLHLARTIASHIG 219
            SA+ + VA+ G+ +  N+VAFSGGVDSS+VAALVH+ FP NS+AC+GVSAALP  QL LAR +A+ IG
Sbjct:    3 SAMVQHVAALGSRKTLNVVAFSGGVDSSVVAALVHEAFPTNSVACLGVSAALPSEQLALARKVATDIG 70          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170383.4357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVK8_ECTSI2.210e-2069.33Asparagine synthetase domain-containing protein n=... [more]
A0A836CNR6_9STRA4.530e-1858.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U0X6F4_9STRA5.160e-1867.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3R6Z9S3_9STRA2.050e-1766.67NAD_synthase domain-containing protein n=1 Tax=Aph... [more]
A0A7S2W2V8_9STRA2.110e-1767.14Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A6G0W843_9STRA4.130e-1765.15Asparagine synthetase domain-containing protein n=... [more]
A0A485LSD2_9STRA5.470e-1763.49Aste57867_23475 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YX19_9STRA6.770e-1764.18NAD_synthase domain-containing protein n=1 Tax=Ach... [more]
A0A3R6WYC5_9STRA1.180e-1666.67NAD_synthase domain-containing protein n=1 Tax=Aph... [more]
A0A067BQ91_SAPPC2.320e-1663.24NAD_synthase domain-containing protein n=1 Tax=Sap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170383contigH-elongata_contig170383:750..968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue7e-17
Seed eggNOG ortholog2880.D7FVK8
EggNOG free text desc.tRNA processing
EggNOG OGs2RYIH@2759,COG1606@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.2208173-CDS-H-elongata_contig170383:749..9681622929993.2208173-CDS-H-elongata_contig170383:749..968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170383 750..968 +
1691679238.3001928-CDS-H-elongata_contig170383:749..9681691679238.3001928-CDS-H-elongata_contig170383:749..968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170383 750..968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170383.4357.1prot_H-elongata_contig170383.4357.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170383 750..968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170383.4357.1

>prot_H-elongata_contig170383.4357.1 ID=prot_H-elongata_contig170383.4357.1|Name=mRNA_H-elongata_contig170383.4357.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MQNIASALRKRVASCGAVEGKNIVAFSGGVDSSLVAALVHQTFPNNSLAC
VGVSAALPVAQLHLARTIASHIG
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mRNA from alignment at H-elongata_contig170383:750..968+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170383.4357.1 ID=mRNA_H-elongata_contig170383.4357.1|Name=mRNA_H-elongata_contig170383.4357.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig170383:750..968+ (Himanthalia elongata Himel1 dioecious)
ATGCAGAACATCGCCAGTGCGCTGCGCAAGCGCGTTGCCTCGTGCGGCGC GGTGGAGGGCAAGAATATTGTCGCTTTCTCGGGAGGTGTTGACTCCTCGC TTGTGGCGGCGCTGGTCCACCAGACCTTCCCAAACAACAGTCTAGCCTGT GTCGGTGTATCGGCGGCTCTGCCTGTGGCGCAGCTGCATCTGGCGCGCAC AATTGCTAGCCACATTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig170383:750..968+

>mRNA_H-elongata_contig170383.4357.1 ID=mRNA_H-elongata_contig170383.4357.1|Name=mRNA_H-elongata_contig170383.4357.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig170383:750..968+ (Himanthalia elongata Himel1 dioecious)
ATGCAGAACATCGCCAGTGCGCTGCGCAAGCGCGTTGCCTCGTGCGGCGC
GGTGGAGGGCAAGAATATTGTCGCTTTCTCGGGAGGTGTTGACTCCTCGC
TTGTGGCGGCGCTGGTCCACCAGACCTTCCCAAACAACAGTCTAGCCTGT
GTCGGTGTATCGGCGGCTCTGCCTGTGGCGCAGCTGCATCTGGCGCGCAC
AATTGCTAGCCACATTGGTATGCAGAACATCGCCAGTGCGCTGCGCAAGC
GCGTTGCCTCGTGCGGCGCGGTGGAGGGCAAGAATATTGTCGCTTTCTCG
GGAGGTGTTGACTCCTCGCTTGTGGCGGCGCTGGTCCACCAGACCTTCCC
AAACAACAGTCTAGCCTGTGTCGGTGTATCGGCGGCTCTGCCTGTGGCGC
AGCTGCATCTGGCGCGCACAATTGCTAGCCACATTGGT
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