mRNA_H-elongata_contig170280.4352.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170280.4352.1
Unique NamemRNA_H-elongata_contig170280.4352.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 6.130e-45
Identity = 84/145 (57.93%), Postives = 104/145 (71.72%), Query Frame = 1 
Query:  154 DKAMQVSTVCGFCDGLGCHTTFNAPSGKAAPVMHSTCPFAPRKDARNPAVQLSLKSARAGLETSPCTNIVMKCIFCFQETYIWKYGMTDHVARCHNEDTLVEAGTERANKFKKDYTVSEMEENKVLKKFKAGKLRRRRDTDSLPP 588
            +K   VSTVCGFC G+GC +T + P G+A P++HSTCP APR DAR  AV L+L SARA  +TSPCTN+V+KC  C Q+ YIW YGM DHV RCH  + LV  GT  A+KFK+  T+SE E+ KVL K KAG+ RRR   ++LPP
Sbjct: 1083 NKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGT-GADKFKEACTISESEKAKVLHKVKAGRPRRRDQGNTLPP 1226
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BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.900e-41
Identity = 80/132 (60.61%), Postives = 93/132 (70.45%), Query Frame = 1 
Query:  130 YVGGHILKDKAMQVSTVCGFCDGLGCHTTFNAPSGKAAPVMHSTCPFAPRKDARNPAVQLSLKSARAGLETSPCTNIVMKCIFCFQETYIWKYGMTDHVARCHNEDTLVEAGTERANKFKKDYTVSEMEENK 525
            Y GGHILKDK   VST CGFC G+G  TT + P GKA P++HSTCP APR DAR  AV L+L SARAG +TS CTN+V KC FC Q  YIWKY M+DH+ RCH  D LV  GT  A+ FK+  T+SE E+ K
Sbjct:  401 YRGGHILKDK---VSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGT-GADNFKETCTISESEKAK 528
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BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 7.770e-26
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  358 IVMKCIFCFQETYIWKYGMTDHVARCHNEDTLVEAGTERANKFKKDYTVSEMEENKVLKKFKAGKLRRR-RDTDSLPPGARRSVSGNGAVASGVPGTR 648
            +V+KC+FC Q+TYIWKYGM++HV RCH ED LV AGT   ++FK+ YT+SE E+ KVL+KFKAG+ RRR +  ++LP GA  S  GNG     + GTR
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGT-TVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMSGTR 97
[Close]
BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Match: A0A6H5K5R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R3_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.240e-20
Identity = 51/98 (52.04%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:  358 IVMKCIFCFQETYIWKYGMTDHVARCHNEDTLVEAGTERANKFKKDYTVSEMEENKVLKKFKAGKLRRR-RDTDSLPPGARRSVSGNGAVASGVPGTR 648
            +V+KC  C Q  YIWKYGM++HV R H ED  V AGT   +KFK+ Y++SE E+ K L KFKAGK R+R +  + LPPGA     GNGA    + GTR
Sbjct:    1 MVLKCFVCSQNNYIWKYGMSEHVTRRHQEDMRVAAGT-GVDKFKEAYSISESEKAKALHKFKAGKPRQRGQGNEVLPPGALGRTEGNGASGRNMAGTR 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE6.130e-4557.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L2E6_9PHAE2.900e-4160.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNW9_ECTSI7.770e-2656.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5R3_9PHAE4.240e-2052.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170280contigH-elongata_contig170280:445..1357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size750
Cds size750
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929992.7505252-CDS-H-elongata_contig170280:444..6031622929992.7505252-CDS-H-elongata_contig170280:444..603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170280 445..603 +
1691679238.1148317-CDS-H-elongata_contig170280:444..6031691679238.1148317-CDS-H-elongata_contig170280:444..603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170280 445..603 +
1622929992.7667391-CDS-H-elongata_contig170280:766..13571622929992.7667391-CDS-H-elongata_contig170280:766..1357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170280 767..1357 +
1691679238.1251106-CDS-H-elongata_contig170280:766..13571691679238.1251106-CDS-H-elongata_contig170280:766..1357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170280 767..1357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170280.4352.1prot_H-elongata_contig170280.4352.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170280 445..1357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170280.4352.1

>prot_H-elongata_contig170280.4352.1 ID=prot_H-elongata_contig170280.4352.1|Name=mRNA_H-elongata_contig170280.4352.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=250bp
PISCGVFKISADMVGVALAGGAGAEKVPCKLCDQRLPRSKIRMYVGGHIL
KDKAMQVSTVCGFCDGLGCHTTFNAPSGKAAPVMHSTCPFAPRKDARNPA
VQLSLKSARAGLETSPCTNIVMKCIFCFQETYIWKYGMTDHVARCHNEDT
LVEAGTERANKFKKDYTVSEMEENKVLKKFKAGKLRRRRDTDSLPPGARR
SVSGNGAVASGVPGTRPQGEQEEEEKEGDDDDDDEEEEEEDEDEDENQED
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mRNA from alignment at H-elongata_contig170280:445..1357+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170280.4352.1 ID=mRNA_H-elongata_contig170280.4352.1|Name=mRNA_H-elongata_contig170280.4352.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=913bp|location=Sequence derived from alignment at H-elongata_contig170280:445..1357+ (Himanthalia elongata Himel1 dioecious)
CCGATTTCTTGTGGTGTGTTTAAAATTTCGGCTGATATGGTGGGTGTGGC
TCTGGCTGGGGGGGCGGGTGCGGAGAAAGTCCCGTGCAAACTCTGCGATC
AACGACTTCCACGATCGAAAATAAGGATGTACGTCGGCGGGCATATACTG
AAGGACAAGGTGTGTATTAGGATTGATTGCTCGTATTTGCCGGTTTCCCA
AGTTGCGCGTTGAAATTGAATTAGGCGCGAAGGTGGGCGATAGTCTTTGC
TAAATGCGAGCCCACATGTTACATGCATCGAAGCCTCACTGGTCTTGTAC
CCTCTCTCTTACCCCATCGCAGGCTATGCAGGTGAGCACTGTTTGCGGCT
TCTGCGATGGCCTCGGATGCCATACCACATTCAACGCCCCATCCGGCAAG
GCTGCGCCCGTCATGCACTCCACCTGTCCCTTTGCTCCTCGCAAGGACGC
GCGTAATCCGGCTGTCCAACTTAGCCTGAAAAGTGCGAGGGCAGGCTTGG
AAACCTCACCGTGCACCAACATCGTCATGAAGTGCATCTTCTGCTTTCAG
GAGACGTACATATGGAAGTATGGTATGACCGACCACGTCGCCAGATGCCA
CAACGAGGACACACTAGTTGAGGCCGGCACAGAGAGGGCAAATAAGTTCA
AGAAGGACTATACTGTGTCGGAGATGGAGGAGAACAAGGTGCTGAAGAAG
TTCAAAGCCGGGAAGCTTCGCCGTCGTCGTGACACCGACAGTCTCCCCCC
TGGCGCACGTAGGAGCGTGTCAGGGAATGGCGCTGTGGCCAGCGGTGTGC
CGGGCACCCGGCCCCAAGGAGAGCAGGAGGAGGAAGAGAAAGAGGGCGAC
GATGACGACGACGACGAAGAAGAAGAAGAAGAAGATGAGGATGAGGATGA
AAACCAGGAGGAT
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Coding sequence (CDS) from alignment at H-elongata_contig170280:445..1357+

>mRNA_H-elongata_contig170280.4352.1 ID=mRNA_H-elongata_contig170280.4352.1|Name=mRNA_H-elongata_contig170280.4352.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1500bp|location=Sequence derived from alignment at H-elongata_contig170280:445..1357+ (Himanthalia elongata Himel1 dioecious)
CCGATTTCTTGTGGTGTGTTTAAAATTTCGGCTGATATGGTGGGTGTGGC
TCTGGCTGGGGGGGCGGGTGCGGAGAAAGTCCCGTGCAAACTCTGCGATC
AACGACTTCCACGATCGAAAATAAGGATGTACGTCGGCGGGCATATACTG
AAGGACAAGCCGATTTCTTGTGGTGTGTTTAAAATTTCGGCTGATATGGT
GGGTGTGGCTCTGGCTGGGGGGGCGGGTGCGGAGAAAGTCCCGTGCAAAC
TCTGCGATCAACGACTTCCACGATCGAAAATAAGGATGTACGTCGGCGGG
CATATACTGAAGGACAAGGCTATGCAGGTGAGCACTGTTTGCGGCTTCTG
CGATGGCCTCGGATGCCATACCACATTCAACGCCCCATCCGGCAAGGCTG
CGCCCGTCATGCACTCCACCTGTCCCTTTGCTCCTCGCAAGGACGCGCGT
AATCCGGCTGTCCAACTTAGCCTGAAAAGTGCGAGGGCAGGCTTGGAAAC
CTCACCGTGCACCAACATCGTCATGAAGTGCATCTTCTGCTTTCAGGAGA
CGTACATATGGAAGTATGGTATGACCGACCACGTCGCCAGATGCCACAAC
GAGGACACACTAGTTGAGGCCGGCACAGAGAGGGCAAATAAGTTCAAGAA
GGACTATACTGTGTCGGAGATGGAGGAGAACAAGGTGCTGAAGAAGTTCA
AAGCCGGGAAGCTTCGCCGTCGTCGTGACACCGACAGTCTCCCCCCTGGC
GCACGTAGGAGCGTGTCAGGGAATGGCGCTGTGGCCAGCGGTGTGCCGGG
CACCCGGCCCCAAGGAGAGCAGGAGGAGGAAGAGAAAGAGGGCGACGATG
ACGACGACGACGAAGAAGAAGAAGAAGAAGATGAGGATGAGGATGAAAAC
CAGGAGGATGCTATGCAGGTGAGCACTGTTTGCGGCTTCTGCGATGGCCT
CGGATGCCATACCACATTCAACGCCCCATCCGGCAAGGCTGCGCCCGTCA
TGCACTCCACCTGTCCCTTTGCTCCTCGCAAGGACGCGCGTAATCCGGCT
GTCCAACTTAGCCTGAAAAGTGCGAGGGCAGGCTTGGAAACCTCACCGTG
CACCAACATCGTCATGAAGTGCATCTTCTGCTTTCAGGAGACGTACATAT
GGAAGTATGGTATGACCGACCACGTCGCCAGATGCCACAACGAGGACACA
CTAGTTGAGGCCGGCACAGAGAGGGCAAATAAGTTCAAGAAGGACTATAC
TGTGTCGGAGATGGAGGAGAACAAGGTGCTGAAGAAGTTCAAAGCCGGGA
AGCTTCGCCGTCGTCGTGACACCGACAGTCTCCCCCCTGGCGCACGTAGG
AGCGTGTCAGGGAATGGCGCTGTGGCCAGCGGTGTGCCGGGCACCCGGCC
CCAAGGAGAGCAGGAGGAGGAAGAGAAAGAGGGCGACGATGACGACGACG
ACGAAGAAGAAGAAGAAGAAGATGAGGATGAGGATGAAAACCAGGAGGAT
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