mRNA_H-elongata_contig170278.4351.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170278.4351.1
Unique NamemRNA_H-elongata_contig170278.4351.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig170278.4351.1 vs. uniprot
Match: D8LEM2_ECTSI (Patatin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM2_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 2.260e-61
Identity = 101/130 (77.69%), Postives = 112/130 (86.15%), Query Frame = 1
Query:    1 KVSFATGASAGGLIAGLFAAGLSPRDMSKIVVKFRRPDFWDPVGFGGVLRGQKFEALIKTALPDGVNRFDQCRVPLAVSAFDVFRPKTRTLAEGDLAPALRATCTFPGLFSPVWHPRGVLIDGGVSDTTG 390
            +VSFATGASAGGL+AGLFAAGLSP DM + VVKFRR DFWDPVGFGG+LRG+KFE ++K  LPD V RFDQ R+PLAVSAFDV R  TRTL EG +A ALRATCTFPGLF+PVWH RGVL+DGGV DTTG
Sbjct:   74 EVSFATGASAGGLVAGLFAAGLSPTDMGETVVKFRRSDFWDPVGFGGLLRGKKFEDIVKGTLPDDVRRFDQGRIPLAVSAFDVSRLMTRTLDEGCIAQALRATCTFPGLFAPVWHDRGVLVDGGVRDTTG 203          
BLAST of mRNA_H-elongata_contig170278.4351.1 vs. uniprot
Match: A0A6H5L0Q6_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q6_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 9.310e-61
Identity = 102/130 (78.46%), Postives = 111/130 (85.38%), Query Frame = 1
Query:    1 KVSFATGASAGGLIAGLFAAGLSPRDMSKIVVKFRRPDFWDPVGFGGVLRGQKFEALIKTALPDGVNRFDQCRVPLAVSAFDVFRPKTRTLAEGDLAPALRATCTFPGLFSPVWHPRGVLIDGGVSDTTG 390
            +VSFATGASAGGL+AGLFAAGLSP DM   VVKFRR DFWDPVGFGG+LRG+KFE ++K  LP GV RFDQ R+PLAVSAFDV R  TRTL EG +A ALRATCTFPGLFSPVWH RGVL+DGGV DTTG
Sbjct:  222 EVSFATGASAGGLVAGLFAAGLSPTDMGDTVVKFRRSDFWDPVGFGGLLRGKKFEDIVKGTLPGGVRRFDQGRIPLAVSAFDVSRLTTRTLDEGCIAQALRATCTFPGLFSPVWHDRGVLVDGGVRDTTG 351          
BLAST of mRNA_H-elongata_contig170278.4351.1 vs. uniprot
Match: A0A835YR40_9STRA (Phospholipase A(2) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR40_9STRA)

HSP 1 Score: 171 bits (433), Expect = 8.120e-47
Identity = 79/130 (60.77%), Postives = 103/130 (79.23%), Query Frame = 1
Query:    1 KVSFATGASAGGLIAGLFAAGLSPRDMSKIVVKFRRPDFWDPVGFGGVLRGQKFEALIKTALPDGVNRFDQCRVPLAVSAFDVFRPKTRTLAEGDLAPALRATCTFPGLFSPVWHPRGVLIDGGVSDTTG 390
            KVSF +GASAG L+ GL+AAGL+P +M++ VV ++R DFWDP G G +LRG+ FE LI+++LP+GV  FDQCR+PL V+ + + R  TR + EGD+A ALRA+CTFP LF PVWHP+GVL+DGGV DT G
Sbjct:   68 KVSFVSGASAGALVGGLYAAGLTPSEMAQRVVAYQRGDFWDPPGVGAMLRGRAFEGLIRSSLPEGVTTFDQCRLPLGVTGYSLSRFTTRVIQEGDIALALRASCTFPVLFQPVWHPQGVLMDGGVFDTAG 197          
BLAST of mRNA_H-elongata_contig170278.4351.1 vs. uniprot
Match: A0A0S8EUV8_9GAMM (PNPLA domain-containing protein n=1 Tax=Gammaproteobacteria bacterium SG8_31 TaxID=1703405 RepID=A0A0S8EUV8_9GAMM)

HSP 1 Score: 130 bits (327), Expect = 6.320e-35
Identity = 61/125 (48.80%), Postives = 87/125 (69.60%), Query Frame = 1
Query:   16 TGASAGGLIAGLFAAGLSPRDMSKIVVKFRRPDFWDPVGFGGVLRGQKFEALIKTALPDGVNRFDQCRVPLAVSAFDVFRPKTRTLAEGDLAPALRATCTFPGLFSPVWHPRGVLIDGGVSDTTG 390
            +G+SAG L  GL+AAGL P ++ ++ V  R+ DFWDP    G+LRG++F  LI++ +P  V R + CR  L+VSAFD+FR +TR +  GDLA +L A+C  PG+F P+WH  G+L+DGG+ D  G
Sbjct:   48 SGSSAGALTGGLWAAGLEPAEIRRLYVGLRKKDFWDPSPGPGLLRGRRFRRLIRSVIP--VQRLEHCRTRLSVSAFDLFRLRTRVMTTGDLARSLYASCAVPGMFHPLWHQGGLLLDGGIRDRPG 170          
BLAST of mRNA_H-elongata_contig170278.4351.1 vs. uniprot
Match: A0A6N7Q127_9DELT (Patatin n=1 Tax=Polyangium spumosum TaxID=889282 RepID=A0A6N7Q127_9DELT)

HSP 1 Score: 126 bits (316), Expect = 2.800e-33
Identity = 64/125 (51.20%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   16 TGASAGGLIAGLFAAGLSPRDMSKIVVKFRRPDFWDPVGFGGVLRGQKFEALIKTALPDGVNRFDQCRVPLAVSAFDVFRPKTRTLAEGDLAPALRATCTFPGLFSPVWHPRGVLIDGGVSDTTG 390
            +G+SAG L+ G++AAG S   +   +++ +R DFWD     G+L G+ F A ++  LP  V  FD+CRVPLAVS +DVF  KTR LAEG LAPA++A+CT PGLF PVWH    L+DGG+ D  G
Sbjct:   59 SGSSAGALVGGIWAAGASAVTIRDELLRLKREDFWDMRPGPGLLAGKLFRARLEALLP--VRTFDRCRVPLAVSVYDVFSRKTRVLAEGPLAPAIQASCTVPGLFHPVWHEGRPLLDGGILDRHG 181          
BLAST of mRNA_H-elongata_contig170278.4351.1 vs. uniprot
Match: A0A2D5EXV4_9DELT (Patatin n=2 Tax=Myxococcales TaxID=29 RepID=A0A2D5EXV4_9DELT)

HSP 1 Score: 122 bits (307), Expect = 4.900e-32
Identity = 59/124 (47.58%), Postives = 82/124 (66.13%), Query Frame = 1
Query:   19 GASAGGLIAGLFAAGLSPRDMSKIVVKFRRPDFWDPVGFGGVLRGQKFEALIKTALPDGVNRFDQCRVPLAVSAFDVFRPKTRTLAEGDLAPALRATCTFPGLFSPVWHPRGVLIDGGVSDTTG 390
            G+SAG L+AG +AAGL    +++  ++  R DFWDP    G+LRG+ F  L++  LP G  RF++CR P+AVS FDV   +TR L  G +APA+ A+C FPG+F PVW  R   +DGG++D  G
Sbjct:   48 GSSAGALVAGCWAAGLDAPAIARTFLELERRDFWDPAPGAGLLRGRLFRGLLEETLPRG--RFEECRRPVAVSVFDVLGRRTRVLDRGPIAPAVHASCAFPGMFQPVWIDRRPYLDGGIADRPG 169          
BLAST of mRNA_H-elongata_contig170278.4351.1 vs. uniprot
Match: A0A4U1J9U9_9DELT (Patatin n=1 Tax=Polyangium fumosum TaxID=889272 RepID=A0A4U1J9U9_9DELT)

HSP 1 Score: 119 bits (298), Expect = 1.530e-30
Identity = 62/125 (49.60%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   16 TGASAGGLIAGLFAAGLSPRDMSKIVVKFRRPDFWDPVGFGGVLRGQKFEALIKTALPDGVNRFDQCRVPLAVSAFDVFRPKTRTLAEGDLAPALRATCTFPGLFSPVWHPRGVLIDGGVSDTTG 390
            +G+SAG L+ G++AAG S   +   +++ +R DFWD     G+L G+ F A ++  LP  V  FD+CRVPLAVS +DVF   TR LA G LAPA++A+CT PGLF PVWH    L+DGG+ D  G
Sbjct:   59 SGSSAGALVGGIWAAGASAVTIRDELLRLKREDFWDMRLGPGLLAGKLFRARLEALLP--VPTFDRCRVPLAVSVYDVFARGTRVLAGGPLAPAIQASCTVPGLFHPVWHEGRPLLDGGILDRHG 181          
BLAST of mRNA_H-elongata_contig170278.4351.1 vs. uniprot
Match: A0A7S3M828_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M828_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.110e-30
Identity = 62/130 (47.69%), Postives = 86/130 (66.15%), Query Frame = 1
Query:    1 KVSFATGASAGGLIAGLFAAGLSPRDMSKIVVKFRRPDFWDPVGFGGVLRGQKFEALIKTALPDGVNRFDQCRVPLAVSAFDVFRPKTRTLAEGDLAPALRATCTFPGLFSPVWHPRGVLIDGGVSDTTG 390
            + S  +G+SAG L+ G  +AG++P +M K V++ +R D WD  G GG+L+G+ FE LI+  LP  V R ++C+ PLAV+ +D+ R KT  L EG LA A+RA+CTFPG+F PV       IDGGV D  G
Sbjct:   81 RPSHVSGSSAGALVGGFLSAGMTPEEMIKAVLEIKRADIWDVGGVGGLLKGELFEQLIERNLP--VQRIEECKYPLAVTTYDLMRFKTLHLTEGKLAQAMRASCTFPGMFQPVMIEGSPNIDGGVFDNVG 208          
BLAST of mRNA_H-elongata_contig170278.4351.1 vs. uniprot
Match: A0A363UKP4_9GAMM (Patatin n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A363UKP4_9GAMM)

HSP 1 Score: 116 bits (291), Expect = 1.380e-29
Identity = 59/125 (47.20%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   16 TGASAGGLIAGLFAAGLSPRDMSKIVVKFRRPDFWDPVGFGGVLRGQKFEALIKTALPDGVNRFDQCRVPLAVSAFDVFRPKTRTLAEGDLAPALRATCTFPGLFSPVWHPRGVLIDGGVSDTTG 390
            +G+SAG LI   +AAGLSP  +++ ++   + DFWDP    G++RG++FE L+++ LP  V R + CRVPLA+S +DVF  KTR L +G LA A+RA+C  P +F PVW      +DGGV D  G
Sbjct:   54 SGSSAGALIGASWAAGLSPSAIAERLLVLDKTDFWDPFPGAGLIRGKRFERLLESWLP--VQRLEDCRVPLALSVYDVFARKTRVLTQGPLARAVRASCAVPLMFHPVWIRGRAYLDGGVQDRPG 176          
BLAST of mRNA_H-elongata_contig170278.4351.1 vs. uniprot
Match: A0A2E3NVP5_9GAMM (Patatin n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A2E3NVP5_9GAMM)

HSP 1 Score: 114 bits (284), Expect = 1.370e-28
Identity = 60/125 (48.00%), Postives = 80/125 (64.00%), Query Frame = 1
Query:   16 TGASAGGLIAGLFAAGLSPRDMSKIVVKFRRPDFWDPVGFGGVLRGQKFEALIKTALPDGVNRFDQCRVPLAVSAFDVFRPKTRTLAEGDLAPALRATCTFPGLFSPVWHPRGVLIDGGVSDTTG 390
            +G+SAG LI   +AAGLSP  +S  ++  ++ DFWDP    G++RG++FE L+   LP  V  F +CRVPLAVS +DV   +TR L  G LAPA+RA+C  P +F PVW      +DGGV D  G
Sbjct:   49 SGSSAGALIGASWAAGLSPSAISDRLLDIQKRDFWDPFPGPGLIRGKRFERLLNDWLP--VKAFGECRVPLAVSVYDVLGRRTRVLDSGALAPAIRASCAVPLMFHPVWMRGRPYLDGGVLDRPG 171          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170278.4351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEM2_ECTSI2.260e-6177.69Patatin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L0Q6_9PHAE9.310e-6178.46PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YR40_9STRA8.120e-4760.77Phospholipase A(2) n=1 Tax=Tribonema minus TaxID=3... [more]
A0A0S8EUV8_9GAMM6.320e-3548.80PNPLA domain-containing protein n=1 Tax=Gammaprote... [more]
A0A6N7Q127_9DELT2.800e-3351.20Patatin n=1 Tax=Polyangium spumosum TaxID=889282 R... [more]
A0A2D5EXV4_9DELT4.900e-3247.58Patatin n=2 Tax=Myxococcales TaxID=29 RepID=A0A2D5... [more]
A0A4U1J9U9_9DELT1.530e-3049.60Patatin n=1 Tax=Polyangium fumosum TaxID=889272 Re... [more]
A0A7S3M828_9STRA2.110e-3047.69Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A363UKP4_9GAMM1.380e-2947.20Patatin n=2 Tax=Gammaproteobacteria TaxID=1236 Rep... [more]
A0A2E3NVP5_9GAMM1.370e-2848.00Patatin n=1 Tax=Xanthomonadales bacterium TaxID=20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170278contigH-elongata_contig170278:80..731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue1.6e-51
Seed eggNOG ortholog2880.D8LEM2
EggNOG OGs2D447@1,2STTJ@2759
Ec32 ortholog descriptionAcyl transferase/acyl hydrolase/lysophospholipase
Ec32 orthologEc-23_002490.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929992.6471543-CDS-H-elongata_contig170278:79..3101622929992.6471543-CDS-H-elongata_contig170278:79..310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170278 80..310 -
1691679238.0935264-CDS-H-elongata_contig170278:79..3101691679238.0935264-CDS-H-elongata_contig170278:79..310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170278 80..310 -
1622929992.6974843-CDS-H-elongata_contig170278:566..7311622929992.6974843-CDS-H-elongata_contig170278:566..731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170278 567..731 -
1691679238.1048825-CDS-H-elongata_contig170278:566..7311691679238.1048825-CDS-H-elongata_contig170278:566..731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170278 567..731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170278.4351.1prot_H-elongata_contig170278.4351.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170278 80..731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170278.4351.1

>prot_H-elongata_contig170278.4351.1 ID=prot_H-elongata_contig170278.4351.1|Name=mRNA_H-elongata_contig170278.4351.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
KVSFATGASAGGLIAGLFAAGLSPRDMSKIVVKFRRPDFWDPVGFGGVLR
GQKFEALIKTALPDGVNRFDQCRVPLAVSAFDVFRPKTRTLAEGDLAPAL
RATCTFPGLFSPVWHPRGVLIDGGVSDTTGT*
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mRNA from alignment at H-elongata_contig170278:80..731-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170278.4351.1 ID=mRNA_H-elongata_contig170278.4351.1|Name=mRNA_H-elongata_contig170278.4351.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=652bp|location=Sequence derived from alignment at H-elongata_contig170278:80..731- (Himanthalia elongata Himel1 dioecious)
AAGGTGAGCTTCGCCACAGGAGCGAGCGCCGGCGGCCTGATCGCGGGGCT GTTCGCAGCGGGATTATCACCGCGAGACATGAGTAAAATCGTCGTGAAGT TTCGGAGGCCGGACTTCTGGGATCCGGTCGGGTTTGGGGGAGTCTTGCGA GGGCAGAAGTTTGAGGTGAGATCGAAAGGGGCGGGGGCGGTTCACCGCGC AACAAGCTTCCTCCTTTCATTTCGATCGGGATTCTCCCTTGATCCCATCG GTTACGGCCGGCGCGCCCTTCCGCCAGATCCTACCCCCCCCCCCCCAAAC CCTATATTTACACAAAAGATAAACATCCCCGTGATTTGCGTTGTTTGTAT GTGTTGCAAAACATTAAATAAGGCGTTTTTTTTGTTCTGTGTGAATCAAC CGCGCATCTTGCTACTCTCAGGCCCTGATCAAGACCGCTCTGCCGGATGG AGTAAATCGCTTCGATCAGTGCCGAGTACCCCTCGCCGTGTCCGCGTTCG ACGTGTTTCGCCCCAAGACTCGTACCCTGGCGGAGGGTGACCTCGCGCCA GCGCTGAGGGCGACCTGTACGTTCCCCGGGCTCTTCTCGCCCGTGTGGCA CCCCAGAGGGGTGTTGATTGACGGCGGAGTGAGCGACACGACCGGTACGT GA
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Coding sequence (CDS) from alignment at H-elongata_contig170278:80..731-

>mRNA_H-elongata_contig170278.4351.1 ID=mRNA_H-elongata_contig170278.4351.1|Name=mRNA_H-elongata_contig170278.4351.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig170278:80..731- (Himanthalia elongata Himel1 dioecious)
AAGGTGAGCTTCGCCACAGGAGCGAGCGCCGGCGGCCTGATCGCGGGGCT
GTTCGCAGCGGGATTATCACCGCGAGACATGAGTAAAATCGTCGTGAAGT
TTCGGAGGCCGGACTTCTGGGATCCGGTCGGGTTTGGGGGAGTCTTGCGA
GGGCAGAAGTTTGAGAAGGTGAGCTTCGCCACAGGAGCGAGCGCCGGCGG
CCTGATCGCGGGGCTGTTCGCAGCGGGATTATCACCGCGAGACATGAGTA
AAATCGTCGTGAAGTTTCGGAGGCCGGACTTCTGGGATCCGGTCGGGTTT
GGGGGAGTCTTGCGAGGGCAGAAGTTTGAGGCCCTGATCAAGACCGCTCT
GCCGGATGGAGTAAATCGCTTCGATCAGTGCCGAGTACCCCTCGCCGTGT
CCGCGTTCGACGTGTTTCGCCCCAAGACTCGTACCCTGGCGGAGGGTGAC
CTCGCGCCAGCGCTGAGGGCGACCTGTACGTTCCCCGGGCTCTTCTCGCC
CGTGTGGCACCCCAGAGGGGTGTTGATTGACGGCGGAGTGAGCGACACGA
CCGGTACGTGAGCCCTGATCAAGACCGCTCTGCCGGATGGAGTAAATCGC
TTCGATCAGTGCCGAGTACCCCTCGCCGTGTCCGCGTTCGACGTGTTTCG
CCCCAAGACTCGTACCCTGGCGGAGGGTGACCTCGCGCCAGCGCTGAGGG
CGACCTGTACGTTCCCCGGGCTCTTCTCGCCCGTGTGGCACCCCAGAGGG
GTGTTGATTGACGGCGGAGTGAGCGACACGACCGGTACGTGA
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