mRNA_H-elongata_contig170201.4347.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170201.4347.1
Unique NamemRNA_H-elongata_contig170201.4347.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: D7G698_ECTSI (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G698_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.770e-48
Identity = 74/91 (81.32%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:   46 QVGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEV 318
            +VG+Y G VKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEY+GH++ V+CI CS DGQW+A+GD++G+LI+WEV
Sbjct:  270 EVGAYGGFVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYKGHAASVRCIACSGDGQWMATGDDNGLLIVWEV 360
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BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: A0A6H5JI55_9PHAE (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI55_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.680e-47
Identity = 74/91 (81.32%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:   46 QVGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEV 318
            +VG+Y G VKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEY+GH++ V+CI CS DGQW+A+GD+ G+LI+WEV
Sbjct:  431 EVGAYGGFVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYKGHAASVRCIACSGDGQWMATGDDSGVLIVWEV 521
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BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: A0A836CBU6_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU6_9STRA)

HSP 1 Score: 141 bits (356), Expect = 5.540e-37
Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:   46 QVGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYE-GHSSRVQCITCSSDGQWLASGDEDGMLILWEV 318
            +VG+YAGL KERFERCLDLYLCPRAFKRRLNIDPESLVP+LP PR+L+PFPN LC+ Y     +RV C+  S DGQ++ASGDE G++ LWEV
Sbjct:  277 RVGAYAGLCKERFERCLDLYLCPRAFKRRLNIDPESLVPKLPHPRDLRPFPNELCLTYGVSGGARVLCLAVSDDGQYMASGDEAGVVSLWEV 368
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BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: A0A7S2V407_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V407_9STRA)

HSP 1 Score: 137 bits (344), Expect = 5.630e-36
Identity = 60/91 (65.93%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:   46 QVGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEV 318
            +VG+Y   VK+RFERCLDLYLCPRA K RLNIDPESLVP LP+P EL+PFPN L + ++GH  RV+ ++ SSDGQ+LASG EDG + +WEV
Sbjct:  380 EVGAYKDFVKQRFERCLDLYLCPRALKHRLNIDPESLVPHLPKPSELRPFPNTLAITFKGHEQRVRAVSVSSDGQFLASGAEDGSVRVWEV 470
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BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: A0A8J2X695_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X695_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.090e-34
Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:   46 QVGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEV 318
            +VG Y   V+ERFERCLDLYLCPR  KRRL IDPESLVP+LP PR+LKPFPNALC  + GH++ V  + CS DGQWLA+ D+ G ++LWEV
Sbjct:  305 RVGVYEKGVQERFERCLDLYLCPRKLKRRLAIDPESLVPKLPDPRDLKPFPNALCRSFIGHTTAVVALDCSRDGQWLATADDSGRVLLWEV 395
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BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: F0YHU1_AURAN (BOP1NT domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHU1_AURAN)

HSP 1 Score: 133 bits (335), Expect = 2.820e-34
Identity = 63/94 (67.02%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:   49 VGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLA----SGDEDGMLILWEV 318
            VG+Y   VKERFERCLDLYLCPRA KRRLNIDPESLVP+LP P++LKPFPNALC ++ GH + V  + CS DGQWLA    + D  G L LWEV
Sbjct:  219 VGAYEHAVKERFERCLDLYLCPRAMKRRLNIDPESLVPKLPDPKDLKPFPNALCRDFVGHDAPVVALACSPDGQWLAETRATADGAGSLRLWEV 312
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BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: A0A7S3HLF9_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLF9_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.660e-34
Identity = 59/90 (65.56%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:   49 VGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEV 318
            VG Y   +KERFERCLDLYLCPR  KRRLNIDPE+LVPRLP PRELKPFPN LC+++ GH   V+ +  S DGQ+LAS  +DG + LWE+
Sbjct:  392 VGGYDNFIKERFERCLDLYLCPRKLKRRLNIDPETLVPRLPSPRELKPFPNTLCLQFLGHVGAVRSVAISPDGQYLASAGDDGTVRLWEL 481
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BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: A0A6B0S2P8_9CETA (Ribosome biogenesis protein BOP1 n=1 Tax=Bos mutus TaxID=72004 RepID=A0A6B0S2P8_9CETA)

HSP 1 Score: 131 bits (329), Expect = 2.930e-33
Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:   25 PSPPPSIQ-VGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEV 318
            P P PS++ V +Y   ++ERFERCLDLYLCPR  K R+N+DPE L+P+LPRPR+L+PFP    + Y GH+S V+C++ S DGQWLASG +DG + LWEV
Sbjct:  364 PRPFPSLRAVPAYGRFIQERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPFPTCQALVYRGHNSLVRCLSVSPDGQWLASGSDDGSVRLWEV 462
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BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: U6DGN8_NEOVI (Ribosome biogenesis protein BOP1 (Fragment) n=2 Tax=Mustelinae TaxID=169418 RepID=U6DGN8_NEOVI)

HSP 1 Score: 129 bits (323), Expect = 4.780e-33
Identity = 56/95 (58.95%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:   37 PSIQ-VGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEV 318
            PS++ V +Y   ++ERFERCLDLYLCPR  K R+N+DPE L+P+LPRPR+L+PFP    + Y GHS+ V+C++ S DGQWLASG +DG + LWEV
Sbjct:  325 PSLRAVPAYGRFIQERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPFPTCQALVYRGHSNLVRCLSVSPDGQWLASGSDDGSVRLWEV 419
[Close]
BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: A0A5J4XXQ5_9CHLO (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XXQ5_9CHLO)

HSP 1 Score: 129 bits (325), Expect = 8.790e-33
Identity = 54/92 (58.70%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:   46 QVGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEVR 321
            QV  Y+  +KERFERCLDLYLCPR+ K+R+N+DP+SLVP+LP+P++L+PFP  L + Y GH++RV+ I+  + GQWLAS  +DG + LWEVR
Sbjct:  362 QVPMYSSFIKERFERCLDLYLCPRSKKKRINVDPQSLVPKLPKPQDLQPFPTTLLLRYTGHTARVRSISPDASGQWLASASDDGSVRLWEVR 453
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G698_ECTSI1.770e-4881.32Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
A0A6H5JI55_9PHAE1.680e-4781.32Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
A0A836CBU6_9STRA5.540e-3770.65Ribosome biogenesis protein BOP1 homolog n=1 Tax=T... [more]
A0A7S2V407_9STRA5.630e-3665.93Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8J2X695_9STRA2.090e-3465.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YHU1_AURAN2.820e-3467.02BOP1NT domain-containing protein n=1 Tax=Aureococc... [more]
A0A7S3HLF9_9STRA4.660e-3465.56Ribosome biogenesis protein BOP1 homolog n=1 Tax=S... [more]
A0A6B0S2P8_9CETA2.930e-3358.59Ribosome biogenesis protein BOP1 n=1 Tax=Bos mutus... [more]
U6DGN8_NEOVI4.780e-3358.95Ribosome biogenesis protein BOP1 (Fragment) n=2 Ta... [more]
A0A5J4XXQ5_9CHLO8.790e-3358.70Ribosome biogenesis protein BOP1 homolog n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170201contigH-elongata_contig170201:759..1079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue2.3e-40
Seed eggNOG ortholog2880.D7G698
Preferred nameERB1
KEGG koko:K14824
GOsGO:0000003,GO:0000027,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0002682,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007276,GO:0008150,GO:0008152,GO:0008283,GO:0009966,GO:0009987,GO:0010467,GO:0010646,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030684,GO:0030686,GO:0030687,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0035206,GO:0035690,GO:0042127,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042493,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0044877,GO:0046483,GO:0048583,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051302,GO:0051704,GO:0051716,GO:0051726,GO:0065003,GO:0065007,GO:0070013,GO:0070180,GO:0070545,GO:0070887,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1901796,GO:1902531,GO:1990904
EggNOG free text desc.rRNA processing
EggNOG OGsKOG0650@1,KOG0650@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBOP1, N-terminal domain
Ec32 orthologEc-10_001070.1
Exons1
Model size321
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929992.264097-CDS-H-elongata_contig170201:758..10791622929992.264097-CDS-H-elongata_contig170201:758..1079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170201 759..1079 +
1691679237.9596577-CDS-H-elongata_contig170201:758..10791691679237.9596577-CDS-H-elongata_contig170201:758..1079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170201 759..1079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170201.4347.1prot_H-elongata_contig170201.4347.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170201 759..1079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170201.4347.1

>prot_H-elongata_contig170201.4347.1 ID=prot_H-elongata_contig170201.4347.1|Name=mRNA_H-elongata_contig170201.4347.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MYVYIPNCPSPPPSIQVGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPE
SLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGM
LILWEVR
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mRNA from alignment at H-elongata_contig170201:759..1079+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170201.4347.1 ID=mRNA_H-elongata_contig170201.4347.1|Name=mRNA_H-elongata_contig170201.4347.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig170201:759..1079+ (Himanthalia elongata Himel1 dioecious)
ATGTATGTATATATCCCCAACTGCCCCTCCCCCCCTCCCTCTATCCAGGT
GGGCTCTTATGCCGGCCTTGTGAAAGAGCGATTCGAGCGGTGTCTCGACC
TCTACCTCTGCCCGCGTGCCTTTAAGCGGCGCCTCAACATCGACCCGGAG
TCTCTGGTGCCGAGGCTGCCGCGCCCTCGAGAGCTCAAGCCCTTCCCGAA
CGCTTTGTGCGTGGAGTACGAGGGCCATTCGTCAAGGGTCCAATGCATCA
CTTGCAGCTCGGACGGGCAGTGGCTTGCCTCGGGCGACGAGGATGGAATG
CTGATTCTATGGGAGGTGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig170201:759..1079+

>mRNA_H-elongata_contig170201.4347.1 ID=mRNA_H-elongata_contig170201.4347.1|Name=mRNA_H-elongata_contig170201.4347.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig170201:759..1079+ (Himanthalia elongata Himel1 dioecious)
ATGTATGTATATATCCCCAACTGCCCCTCCCCCCCTCCCTCTATCCAGGT
GGGCTCTTATGCCGGCCTTGTGAAAGAGCGATTCGAGCGGTGTCTCGACC
TCTACCTCTGCCCGCGTGCCTTTAAGCGGCGCCTCAACATCGACCCGGAG
TCTCTGGTGCCGAGGCTGCCGCGCCCTCGAGAGCTCAAGCCCTTCCCGAA
CGCTTTGTGCGTGGAGTACGAGGGCCATTCGTCAAGGGTCCAATGCATCA
CTTGCAGCTCGGACGGGCAGTGGCTTGCCTCGGGCGACGAGGATGGAATG
CTGATTCTATGGGAGGTGAGGATGTATGTATATATCCCCAACTGCCCCTC
CCCCCCTCCCTCTATCCAGGTGGGCTCTTATGCCGGCCTTGTGAAAGAGC
GATTCGAGCGGTGTCTCGACCTCTACCTCTGCCCGCGTGCCTTTAAGCGG
CGCCTCAACATCGACCCGGAGTCTCTGGTGCCGAGGCTGCCGCGCCCTCG
AGAGCTCAAGCCCTTCCCGAACGCTTTGTGCGTGGAGTACGAGGGCCATT
CGTCAAGGGTCCAATGCATCACTTGCAGCTCGGACGGGCAGTGGCTTGCC
TCGGGCGACGAGGATGGAATGCTGATTCTATGGGAGGTGAGG
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