mRNA_H-elongata_contig17009.4343.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig17009.4343.1 vs. uniprot
Match: D7FZ31_ECTSI (Viral A-type inclusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ31_ECTSI) HSP 1 Score: 238 bits (606), Expect = 1.010e-65 Identity = 149/227 (65.64%), Postives = 173/227 (76.21%), Query Frame = 1
Query: 1 RAEAAEKSLAELRAKHSQVDQASHDFKRRERLVAEREGAARAWEASLRSEQLAAQQALSEAGDRIRETEERDALIKEREKALEARLQELETLKEEQRRVLKRAALHHQAQIKELDLEKKEVAANLQRSAASFLISRVASIPRRRLEDAWLTWRLRGLDVGSKVLREREAEARARAAELQESMARGLQELRVGKEGLEEEAARVQQIRDRAEADLRQVGRQHKEALAL 681
RAEAAE+SL+ LR K S++D A HD RRERLV EREGAARAWE+SLRSEQ +A+QALSEAG R++ +EER+A +KE E RL LK+ QR LK A H A+ KELD ++ +L+RSAASFL SR++S+PRRRLE AWL RLRG+D S+ LREREAEAR RA+ELQ SM RGLQELRVGKEGLEEEAARVQQ R R EADLRQV RQHKE L L
Sbjct: 895 RAEAAEESLSLLRVKLSEMDDAKHDVNRRERLVGEREGAARAWESSLRSEQASARQALSEAGARVKLSEEREASLKEAEXXXXXRLXXXXRLKQXQREALKEKAAEHNAKRKELDEAGRKAHQDLRRSAASFLFSRLSSLPRRRLEGAWLQLRLRGVDADSEALREREAEARGRASELQASMERGLQELRVGKEGLEEEAARVQQARVRVEADLRQVARQHKEVLHL 1121
BLAST of mRNA_H-elongata_contig17009.4343.1 vs. uniprot
Match: A0A6H5KJI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI0_9PHAE) HSP 1 Score: 193 bits (491), Expect = 1.840e-50 Identity = 185/443 (41.76%), Postives = 223/443 (50.34%), Query Frame = 1
Query: 1 RAEAAEKSLAELRAKHSQVDQASHDFKRRERLVAEREGAARAWEASLR------------------------SEQLAAQQALSEAGDRIRETEERDALIKERE------KALEARLQELETLKEEQRRVLKRAALHHQAQIKELDLEKKEVAANLQRSAASFLISRVASIPRRRLEDAWLTWRLRGLDVGSKVLREREAEARARAAELQESMARGLQELRVGKEGLEEE---AARVQQIRDRAEADLRQVGRQHKEALALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELQEIGRRELDAGKAELKTATEGLEREKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTSRVGAEKTALRQQRSELEDKEASVAVREENIRALNAEVIAN 1230
RAEAAE+SL+ LR K S++D A HD RRERLV EREGAARAWE+SL + A++ L + E + +++ + +ALE RL+ELE LK+EQR LK A H A KELD ++ +L RSAASFL SR++S+PRRRLE AWL RLRG+D GS+ LREREAEAR RA+ELQ SM RGLQELRVGKEGL AARV R EADLRQV RQHKE L L XXXXXXXXXXXXXXXXX ELQE GRRE+DAG+ EL+ A EGLE+EK F++RVG D+EA + R+E++R L A+V N
Sbjct: 868 RAEAAEESLSLLRVKLSEMDDAKHDVNRRERLVGEREGAARAWESSLXXXXXXXXXXXXXXXXXXXXXXXXXASLKVAEEGLLKTYWMSSTRNENNGVLRHHDWSGLKLQALEERLEELERLKQEQREALKEKAAEHDATRKELDEASRKAHQDLLRSAASFLFSRLSSLPRRRLEGAWLQLRLRGVDAGSEALREREAEARGRASELQASMERGLQELRVGKEGLXXXXXLAARV-----RVEADLRQVARQHKEVLHLKEKASRDLAEAESKRAALEEERKSLREEADKAEGLGQALAHEKAVVETXXXXXXXXXXXXXXXXXALEELQEAGRREVDAGREELRLAAEGLEKEKGDIKAAWKAFEDDRLKAEAALERSRNVLEGEKAEVQRARGDLDRFSARVGXXXXXXXXXXXXXXDREAELKTRQEDVRVLEAKVQQN 1305 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17009.4343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17009.4343.1 >prot_H-elongata_contig17009.4343.1 ID=prot_H-elongata_contig17009.4343.1|Name=mRNA_H-elongata_contig17009.4343.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=411bp RAEAAEKSLAELRAKHSQVDQASHDFKRRERLVAEREGAARAWEASLRSEback to top mRNA from alignment at H-elongata_contig17009:1555..6317+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17009.4343.1 ID=mRNA_H-elongata_contig17009.4343.1|Name=mRNA_H-elongata_contig17009.4343.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4763bp|location=Sequence derived from alignment at H-elongata_contig17009:1555..6317+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17009:1555..6317+ >mRNA_H-elongata_contig17009.4343.1 ID=mRNA_H-elongata_contig17009.4343.1|Name=mRNA_H-elongata_contig17009.4343.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2466bp|location=Sequence derived from alignment at H-elongata_contig17009:1555..6317+ (Himanthalia elongata Himel1 dioecious)back to top |