mRNA_H-elongata_contig169880.4334.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169880.4334.1
Unique NamemRNA_H-elongata_contig169880.4334.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169880.4334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169880contigH-elongata_contig169880:632..1234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929990.9177518-CDS-H-elongata_contig169880:633..7461622929990.9177518-CDS-H-elongata_contig169880:633..746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169880 634..746 -
1691679237.3004231-CDS-H-elongata_contig169880:633..7461691679237.3004231-CDS-H-elongata_contig169880:633..746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169880 634..746 -
1622929990.9332466-CDS-H-elongata_contig169880:1092..12341622929990.9332466-CDS-H-elongata_contig169880:1092..1234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169880 1093..1234 -
1691679237.3089912-CDS-H-elongata_contig169880:1092..12341691679237.3089912-CDS-H-elongata_contig169880:1092..1234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169880 1093..1234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169880.4334.1prot_H-elongata_contig169880.4334.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169880 634..1234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169880.4334.1

>prot_H-elongata_contig169880.4334.1 ID=prot_H-elongata_contig169880.4334.1|Name=mRNA_H-elongata_contig169880.4334.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
VARESGHLAIVKPTAEACAVPSWKWLIFICEQGQEALSPQASTTPHIGDP
SSKGSASSGMSFAAAGGPKSAPGGTARSGAGACAQ
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mRNA from alignment at H-elongata_contig169880:632..1234-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169880.4334.1 ID=mRNA_H-elongata_contig169880.4334.1|Name=mRNA_H-elongata_contig169880.4334.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=603bp|location=Sequence derived from alignment at H-elongata_contig169880:632..1234- (Himanthalia elongata Himel1 dioecious)
GTAGCGCGTGAAAGTGGCCACTTAGCAATCGTCAAACCTACGGCTGAGGC
GTGCGCTGTACCTTCCTGGAAGTGGCTCATTTTTATCTGCGAACAAGGTC
AAGAGGCTTTATCGCCGCAAGCATCAACGACCCCCCACATTGGTGTGTGT
CTGATGGAAATGAGAGGATATGCCACGCAACGGTGTTTTTCCCAACCACA
AATGCTGGGTGTGCTTGGTTGCAGTAGCGCTGTGTTCTTAGATACTGGGA
CTGGTGAAGTTTCACAGACTGATGATTCATCTTCTTGCGAGAGTCTCTCT
CACTCCTTAGCACGAGTTGCAACAACGTTTCCCTGGCGAGGTTCGCGTTT
TGAATTTAAGCTGGGTACCTTATCTCTTTGTAGCTCCTGATTTTAAATTA
AATGTATAGTATGTAGGGCCAGTGCCCAAACCACATGATACCTAAGAGAC
ATCACATCTTAATCTGCTGGTCATCACGCCAATGGCAGGTGATCCCTCAA
GTAAAGGCAGTGCCTCCAGCGGTATGAGTTTTGCGGCTGCTGGCGGCCCC
AAATCGGCACCAGGGGGCACAGCTAGATCTGGGGCTGGCGCATGTGCTCA
GGG
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Coding sequence (CDS) from alignment at H-elongata_contig169880:632..1234-

>mRNA_H-elongata_contig169880.4334.1 ID=mRNA_H-elongata_contig169880.4334.1|Name=mRNA_H-elongata_contig169880.4334.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig169880:632..1234- (Himanthalia elongata Himel1 dioecious)
GTAGCGCGTGAAAGTGGCCACTTAGCAATCGTCAAACCTACGGCTGAGGC
GTGCGCTGTACCTTCCTGGAAGTGGCTCATTTTTATCTGCGAACAAGGTC
AAGAGGCTTTATCGCCGCAAGCATCAACGACCCCCCACATTGGTAGCGCG
TGAAAGTGGCCACTTAGCAATCGTCAAACCTACGGCTGAGGCGTGCGCTG
TACCTTCCTGGAAGTGGCTCATTTTTATCTGCGAACAAGGTCAAGAGGCT
TTATCGCCGCAAGCATCAACGACCCCCCACATTGGTGATCCCTCAAGTAA
AGGCAGTGCCTCCAGCGGTATGAGTTTTGCGGCTGCTGGCGGCCCCAAAT
CGGCACCAGGGGGCACAGCTAGATCTGGGGCTGGCGCATGTGCTCAGGTG
ATCCCTCAAGTAAAGGCAGTGCCTCCAGCGGTATGAGTTTTGCGGCTGCT
GGCGGCCCCAAATCGGCACCAGGGGGCACAGCTAGATCTGGGGCTGGCGC
ATGTGCTCAG
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