mRNA_H-elongata_contig169793.4332.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169793.4332.1
Unique NamemRNA_H-elongata_contig169793.4332.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig169793.4332.1 vs. uniprot
Match: D7FVK8_ECTSI (Asparagine synthetase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK8_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.880e-22
Identity = 64/96 (66.67%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    1 GSDPDYIANEGQSCFHCKTHLYSALEAVAVQAGVEARRYGGGVSFGD--------EGIGDVGAGTDARKQSRGGGERGGVVLFNGTNKDDKRDHTR 264
            GSDPDYIANEGQSCFHCKTHLYSALEAVAVQAGVE+RR     + GD        EG G  GAG         GG R  VVLFNGTNKDDKRD TR
Sbjct:   86 GSDPDYIANEGQSCFHCKTHLYSALEAVAVQAGVESRR-SSAAAVGDGEPSTSALEGGGADGAGGIVE-----GGRR--VVLFNGTNKDDKRDTTR 173          
BLAST of mRNA_H-elongata_contig169793.4332.1 vs. uniprot
Match: A0A836CNR6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNR6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.750e-11
Identity = 40/88 (45.45%), Postives = 48/88 (54.55%), Query Frame = 1
Query:    1 GSDPDYIANEGQSCFHCKTHLYSALEAVAVQAGVEARRYGGGVSFGDEGIGDVGAGTDARKQSRGGGERGGVVLFNGTNKDDKRDHTR 264
            GSDP+YIAN GQSC+HCK+HLYSALEA+A  A        GG               D+R            VLFNGTN++D+ D TR
Sbjct:   84 GSDPEYIANRGQSCYHCKSHLYSALEAIAADATAAVHSRNGGDG-------------DSRN-----------VLFNGTNQEDRSDTTR 147          
BLAST of mRNA_H-elongata_contig169793.4332.1 vs. uniprot
Match: A0A6V1PUF6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PUF6_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 1.800e-10
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 1
Query:    1 GSDPDYIANEGQSCFHCKTHLYSALEAVAVQAGVEARRYGGGVSFGDEGIGDVGAGTDARKQSRGGGERGGVVLFNGTNKDDKRDHTR 264
            G D DYIAN+G++C+HCKTHLYS+L AVA  A  +    G                TD +++         V+LFNGTNKDD RD TR
Sbjct:   87 GYDADYIANKGKACYHCKTHLYSSLMAVAELAAAKGNIIG----------------TDGKEK---------VILFNGTNKDDLRDDTR 149          
BLAST of mRNA_H-elongata_contig169793.4332.1 vs. uniprot
Match: A0A4D9D8U2_9STRA (Asparagine synthetase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8U2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.490e-8
Identity = 39/92 (42.39%), Postives = 49/92 (53.26%), Query Frame = 1
Query:    1 GSDPDYIANEGQSCFHCKTHLYSALEAVAVQAGVEARRYGGGVSFGDEGIGDVGAGTDARKQSRGGGERGG----VVLFNGTNKDDKRDHTR 264
            G+ P+Y+AN G SCFHCKTHLY+AL+AVA   G        G    +      G  T+  +  +  G        V LFNGTN DD+RD TR
Sbjct:   99 GAAPEYVANRGMSCFHCKTHLYTALQAVAAVVGTHMN----GPLSSNFLHSTQGGSTETLQHVKMNGADASAPSVVALFNGTNADDRRDPTR 186          
BLAST of mRNA_H-elongata_contig169793.4332.1 vs. uniprot
Match: A0A6U0X6F4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0X6F4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.610e-8
Identity = 38/94 (40.43%), Postives = 48/94 (51.06%), Query Frame = 1
Query:    1 GSDPDYIANEGQSCFHCKTHLYSALEAVAVQAGVEARRYGGGVSFGDEGIGDVGAGTDARKQSRGGGERGGVVLFNGTNKDDKRDHTRCSRRCS 282
            GS P+Y+ANEG +C+HCK+ LY+AL AVA        R+  GV  G                    G    VVL+NGTN DD+RD TR   R +
Sbjct:   85 GSHPEYLANEGMACYHCKSELYTALGAVA--------RFASGVGTG--------------------GPATPVVLYNGTNADDQRDPTRVGLRAA 150          
BLAST of mRNA_H-elongata_contig169793.4332.1 vs. uniprot
Match: A0A7S2W2V8_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2V8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.890e-8
Identity = 38/94 (40.43%), Postives = 48/94 (51.06%), Query Frame = 1
Query:    1 GSDPDYIANEGQSCFHCKTHLYSALEAVAVQAGVEARRYGGGVSFGDEGIGDVGAGTDARKQSRGGGERGGVVLFNGTNKDDKRDHTRCSRRCS 282
            GS P+Y+ANEG +C+HCK+ LY+AL AVA        R+  GV  G                    G    VVL+NGTN DD+RD TR   R +
Sbjct:   85 GSHPEYLANEGMACYHCKSELYTALGAVA--------RFASGVGTG--------------------GPATPVVLYNGTNADDQRDPTRVGLRAA 150          
BLAST of mRNA_H-elongata_contig169793.4332.1 vs. uniprot
Match: A0A7S4NGG1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGG1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.100e-8
Identity = 36/88 (40.91%), Postives = 45/88 (51.14%), Query Frame = 1
Query:    1 GSDPDYIANEGQSCFHCKTHLYSALEAVAVQAGVEARRYGGGVSFGDEGIGDVGAGTDARKQSRGGGERGGVVLFNGTNKDDKRDHTR 264
            G+DP Y+AN+GQ+C  CKTHLYSAL AVA  A ++  R G                             G V+L+NGTN DD +D TR
Sbjct:  167 GTDPTYVANKGQACLACKTHLYSALNAVAAAA-LDMERVG---------------------------RDGSVILYNGTNADDTKDPTR 226          
BLAST of mRNA_H-elongata_contig169793.4332.1 vs. uniprot
Match: A0A7R9WJ49_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WJ49_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.700e-7
Identity = 38/88 (43.18%), Postives = 44/88 (50.00%), Query Frame = 1
Query:    1 GSDPDYIANEGQSCFHCKTHLYSALEAVAVQAGVEARRYGGGVSFGDEGIGDVGAGTDARKQSRGGGERGGVVLFNGTNKDDKRDHTR 264
            GSD  YIAN G++C  CKTHLYSAL AVA  A                        +D+ K  RG      VVL+NGTN DD +D TR
Sbjct:  177 GSDSTYIANRGEACLACKTHLYSALNAVAKAA------------------------SDSGKTLRG----RSVVLYNGTNADDTKDPTR 236          
BLAST of mRNA_H-elongata_contig169793.4332.1 vs. uniprot
Match: A0A7S1B757_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B757_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.050e-7
Identity = 36/83 (43.37%), Postives = 39/83 (46.99%), Query Frame = 1
Query:   16 YIANEGQSCFHCKTHLYSALEAVAVQAGVEARRYGGGVSFGDEGIGDVGAGTDARKQSRGGGERGGVVLFNGTNKDDKRDHTR 264
            YIANEG +C+HCKTHLY AL AV   A                        T  R    G G R   VL+NGTN DD RD TR
Sbjct:  170 YIANEGMACYHCKTHLYQALNAVGRHAE-----------------------TMGRPDPDGEGGRPATVLYNGTNLDDTRDATR 229          
BLAST of mRNA_H-elongata_contig169793.4332.1 vs. uniprot
Match: A0A7S1B778_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B778_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.020e-6
Identity = 36/83 (43.37%), Postives = 39/83 (46.99%), Query Frame = 1
Query:   16 YIANEGQSCFHCKTHLYSALEAVAVQAGVEARRYGGGVSFGDEGIGDVGAGTDARKQSRGGGERGGVVLFNGTNKDDKRDHTR 264
            YIANEG +C+HCKTHLY AL AV   A                        T  R    G G R   VL+NGTN DD RD TR
Sbjct:  170 YIANEGMACYHCKTHLYQALNAVGRHAE-----------------------TMGRPDPDGEGGRPATVLYNGTNLDDTRDATR 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169793.4332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FVK8_ECTSI1.880e-2266.67Asparagine synthetase domain-containing protein n=... [more]
A0A836CNR6_9STRA4.750e-1145.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1PUF6_HETAK1.800e-1044.32Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A4D9D8U2_9STRA1.490e-842.39Asparagine synthetase domain-containing protein n=... [more]
A0A6U0X6F4_9STRA1.610e-840.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2W2V8_9STRA3.890e-840.43Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S4NGG1_9STRA5.100e-840.91Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9WJ49_9STRA5.700e-743.18Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1B757_9STRA7.050e-743.37Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S1B778_9STRA1.020e-643.37Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169793contigH-elongata_contig169793:599..1353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue3.4e-20
Seed eggNOG ortholog2880.D7FVK8
EggNOG free text desc.tRNA processing
EggNOG OGs2RYIH@2759,COG1606@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size757
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929990.785478-CDS-H-elongata_contig169793:598..9191622929990.785478-CDS-H-elongata_contig169793:598..919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169793 599..919 +
1691679237.2384622-CDS-H-elongata_contig169793:598..9191691679237.2384622-CDS-H-elongata_contig169793:598..919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169793 599..919 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929990.7999473-UTR-H-elongata_contig169793:919..13531622929990.7999473-UTR-H-elongata_contig169793:919..1353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig169793 920..1353 +
1691679237.248325-UTR-H-elongata_contig169793:919..13531691679237.248325-UTR-H-elongata_contig169793:919..1353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig169793 920..1353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169793.4332.1prot_H-elongata_contig169793.4332.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169793 599..919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169793.4332.1

>prot_H-elongata_contig169793.4332.1 ID=prot_H-elongata_contig169793.4332.1|Name=mRNA_H-elongata_contig169793.4332.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
GSDPDYIANEGQSCFHCKTHLYSALEAVAVQAGVEARRYGGGVSFGDEGI
GDVGAGTDARKQSRGGGERGGVVLFNGTNKDDKRDHTRCSRRCSGVAWRD
VAWRGS*
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mRNA from alignment at H-elongata_contig169793:599..1353+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169793.4332.1 ID=mRNA_H-elongata_contig169793.4332.1|Name=mRNA_H-elongata_contig169793.4332.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=755bp|location=Sequence derived from alignment at H-elongata_contig169793:599..1353+ (Himanthalia elongata Himel1 dioecious)
GGCTCCGATCCCGACTACATCGCCAACGAGGGCCAGAGCTGCTTCCACTG CAAGACGCACCTCTACTCGGCGCTCGAGGCGGTCGCGGTGCAGGCTGGTG TCGAGGCTCGCCGCTACGGAGGCGGTGTGTCATTCGGGGACGAAGGCATT GGCGACGTCGGCGCGGGCACGGACGCTCGAAAACAAAGTCGGGGAGGGGG AGAGAGAGGGGGTGTAGTCCTTTTTAACGGCACGAACAAAGATGACAAGC GTGACCACACCAGGTGCAGTAGGCGATGTTCTGGTGTAGCCTGGCGTGAC GTGGCGTGGCGTGGATCGTGATCTGTCGGGTGCCGTATCCTCCGGGGTCT TTTGTTCGTTTGTCTTTTTCTGTGGGTTGTTTGTTTATTTTATATTGAAA AACATATAAACTCTGTTTTGTGTATGTATATGTGTGTCTGTTATGGTTGT CGTATTTTAGGCTTCACTTTTTTTTTTATCATTATTACTTTTTTCCTTGT TCCGTGAAACACGAGCGGTGTGTAACGTGAAAACGATAACCTACCGGTGG GGCTAACCTTCTACCTATTATATACTATGATTTAAGTGGGCTGAGGGATA GTACCCTGGCTAGGTTTTGGTTCGTCTTGTAAGGTATGGAGCGAAAGGGT TATAATACAAAATGGATGGTGACCTTGGCATCTTGCTAGCTTTCTTCTTA CTCTCATGTATGGTGATCGGTCGTTGCTCGTCTACTGCTGCTGCTGCTAC CAAAC
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Coding sequence (CDS) from alignment at H-elongata_contig169793:599..1353+

>mRNA_H-elongata_contig169793.4332.1 ID=mRNA_H-elongata_contig169793.4332.1|Name=mRNA_H-elongata_contig169793.4332.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig169793:599..1353+ (Himanthalia elongata Himel1 dioecious)
GGCTCCGATCCCGACTACATCGCCAACGAGGGCCAGAGCTGCTTCCACTG
CAAGACGCACCTCTACTCGGCGCTCGAGGCGGTCGCGGTGCAGGCTGGTG
TCGAGGCTCGCCGCTACGGAGGCGGTGTGTCATTCGGGGACGAAGGCATT
GGCGACGTCGGCGCGGGCACGGACGCTCGAAAACAAAGTCGGGGAGGGGG
AGAGAGAGGGGGTGTAGTCCTTTTTAACGGCACGAACAAAGATGACAAGC
GTGACCACACCAGGTGCAGTAGGCGATGTTCTGGTGTAGCCTGGCGTGAC
GTGGCGTGGCGTGGATCGTGAGGCTCCGATCCCGACTACATCGCCAACGA
GGGCCAGAGCTGCTTCCACTGCAAGACGCACCTCTACTCGGCGCTCGAGG
CGGTCGCGGTGCAGGCTGGTGTCGAGGCTCGCCGCTACGGAGGCGGTGTG
TCATTCGGGGACGAAGGCATTGGCGACGTCGGCGCGGGCACGGACGCTCG
AAAACAAAGTCGGGGAGGGGGAGAGAGAGGGGGTGTAGTCCTTTTTAACG
GCACGAACAAAGATGACAAGCGTGACCACACCAGGTGCAGTAGGCGATGT
TCTGGTGTAGCCTGGCGTGACGTGGCGTGGCGTGGATCGTGA
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