mRNA_H-elongata_contig169781.4331.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169781.4331.1
Unique NamemRNA_H-elongata_contig169781.4331.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig169781.4331.1 vs. uniprot
Match: D7FQA7_ECTSI (Hypothetical leucine rich repeat and MORN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQA7_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.660e-34
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 LEAEVEQFYADDPGNTRELFLQAVARLKTITRDDWFMIRNYDQPPPVIAALMSAACTLMLVKDTWKSARNLVGSSVQNME 240
            LEAEVEQFY DDPG TRELF +AV RLKTI   +WFM+RNYD+PPPV+A LMSA CTL+LV+D+WKSARN+VGSSVQNME
Sbjct: 3190 LEAEVEQFYTDDPGRTRELFHEAVERLKTIEGSEWFMVRNYDKPPPVLATLMSAVCTLVLVRDSWKSARNMVGSSVQNME 3269
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BLAST of mRNA_H-elongata_contig169781.4331.1 vs. uniprot
Match: A0A7S3ZXM5_9STRA (Hypothetical protein (Fragment) n=6 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZXM5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.630e-10
Identity = 28/74 (37.84%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:   19 QFYADDPGNTRELFLQAVARLKTITRDDWFMIRNYDQPPPVIAALMSAACTLMLVKDTWKSARNLVGSSVQNME 240
            +F+ DDP  TR+ F  AV +++ +   D+F+IR + +PPP++  ++ AAC L   ++TWK+A+ L+ SS  N +
Sbjct: 3709 KFWDDDPHKTRDAFAAAVRKIQALELRDFFVIRYFPEPPPLLEKVLRAACILTSEQETWKAAQLLLSSSQINAD 3782
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169781.4331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQA7_ECTSI1.660e-3477.50Hypothetical leucine rich repeat and MORN domain-c... [more]
A0A7S3ZXM5_9STRA3.630e-1037.84Hypothetical protein (Fragment) n=6 Tax=Pelagomona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169781contigH-elongata_contig169781:1037..1279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue8e-30
Seed eggNOG ortholog2880.D7FQA7
Preferred nameFBXO39
KEGG rclassRC00002
KEGG koko:K00939,ko:K10314
KEGG ReactionR00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0030163,GO:0031146,GO:0031461,GO:0032991,GO:0043087,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0051603,GO:0065007,GO:0065009,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.regulation of ryanodine-sensitive calcium-release channel activity
EggNOG OGsCOG4642@1,KOG0231@2759,KOG1032@1,KOG1032@2759,KOG1947@1,KOG1947@2759
EC2.7.4.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929990.748369-CDS-H-elongata_contig169781:1036..12791622929990.748369-CDS-H-elongata_contig169781:1036..1279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169781 1037..1279 +
1691679237.2236538-CDS-H-elongata_contig169781:1036..12791691679237.2236538-CDS-H-elongata_contig169781:1036..1279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169781 1037..1279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169781.4331.1prot_H-elongata_contig169781.4331.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169781 1037..1279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169781.4331.1

>prot_H-elongata_contig169781.4331.1 ID=prot_H-elongata_contig169781.4331.1|Name=mRNA_H-elongata_contig169781.4331.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
LEAEVEQFYADDPGNTRELFLQAVARLKTITRDDWFMIRNYDQPPPVIAA
LMSAACTLMLVKDTWKSARNLVGSSVQNMEV
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mRNA from alignment at H-elongata_contig169781:1037..1279+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169781.4331.1 ID=mRNA_H-elongata_contig169781.4331.1|Name=mRNA_H-elongata_contig169781.4331.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig169781:1037..1279+ (Himanthalia elongata Himel1 dioecious)
CTCGAAGCAGAAGTGGAACAGTTTTACGCCGACGACCCAGGCAATACCAG
GGAGCTGTTTCTGCAGGCTGTGGCTCGCCTCAAAACTATCACGAGGGATG
ATTGGTTCATGATTCGAAATTACGATCAGCCACCGCCGGTGATTGCCGCG
CTCATGTCTGCCGCGTGCACCCTCATGCTTGTGAAAGACACCTGGAAGAG
CGCGAGGAATCTCGTCGGTTCCTCCGTACAGAACATGGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig169781:1037..1279+

>mRNA_H-elongata_contig169781.4331.1 ID=mRNA_H-elongata_contig169781.4331.1|Name=mRNA_H-elongata_contig169781.4331.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig169781:1037..1279+ (Himanthalia elongata Himel1 dioecious)
CTCGAAGCAGAAGTGGAACAGTTTTACGCCGACGACCCAGGCAATACCAG
GGAGCTGTTTCTGCAGGCTGTGGCTCGCCTCAAAACTATCACGAGGGATG
ATTGGTTCATGATTCGAAATTACGATCAGCCACCGCCGGTGATTGCCGCG
CTCATGTCTGCCGCGTGCACCCTCATGCTTGTGAAAGACACCTGGAAGAG
CGCGAGGAATCTCGTCGGTTCCTCCGTACAGAACATGGAGGTACTCGAAG
CAGAAGTGGAACAGTTTTACGCCGACGACCCAGGCAATACCAGGGAGCTG
TTTCTGCAGGCTGTGGCTCGCCTCAAAACTATCACGAGGGATGATTGGTT
CATGATTCGAAATTACGATCAGCCACCGCCGGTGATTGCCGCGCTCATGT
CTGCCGCGTGCACCCTCATGCTTGTGAAAGACACCTGGAAGAGCGCGAGG
AATCTCGTCGGTTCCTCCGTACAGAACATGGAGGTA
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