mRNA_H-elongata_contig16976.4330.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16976.4330.1
Unique NamemRNA_H-elongata_contig16976.4330.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16976.4330.1 vs. uniprot
Match: D7FUU8_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUU8_ECTSI)

HSP 1 Score: 316 bits (809), Expect = 2.130e-106
Identity = 163/219 (74.43%), Postives = 190/219 (86.76%), Query Frame = 1 
Query:  127 MPNVQALTGTPHEPHLRLLEVFAYGTYADAQAKLDELPKLSGFQAEKLRMLSIVTLAHTSKVVPYATIKAALGMDNVRHLEDIIFDTIYAGLLQGKLDQRQEVLKVKYAVARDVSLNDLGTIITKLGNWASTTQVLLTTLEGSVEEAAASRQREAHTAERLAVEAAEVKKNITENGGKQRDDDGYHDLGFDVDTDRSSVRRGRTKRNRAGMSDFRPRNK 783
            MPNVQAL GTPHEPHLRLLE FAYGTY DAQAK D+LPKL+G Q +KLRMLS+V+LAHTSK+VPYA +K ALG+DN+R LED+IFDT+YAGLLQGKLDQRQ VLKVKYA+ARDV +++L T+I KLG+WASTTQVLL TLEGSV +AA SR+ EA  AE LA EAAEVKKN +E+ GKQRDDDG+HD+GFD++     +RRGR+KRNRAGM DFRPRNK
Sbjct:    1 MPNVQALAGTPHEPHLRLLETFAYGTYTDAQAKADQLPKLTGAQVDKLRMLSVVSLAHTSKLVPYAAMKTALGIDNIRRLEDVIFDTMYAGLLQGKLDQRQAVLKVKYAMARDVRVDELTTMIDKLGSWASTTQVLLETLEGSVTQAAESRKSEAQIAESLAAEAAEVKKNFSESTGKQRDDDGFHDVGFDMEDRSGGMRRGRSKRNRAGM-DFRPRNK 218
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BLAST of mRNA_H-elongata_contig16976.4330.1 vs. uniprot
Match: A0A7S2CC19_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CC19_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.770e-61
Identity = 124/258 (48.06%), Postives = 162/258 (62.79%), Query Frame = 1 
Query:    1 MSEEG--LVQFLVLAKTAKGAACVALIQQVLSHKKIFVFGELLAMPNVQALTGTPHEPHLRLLEVFAYGTYADAQAKLDELPKLSGFQAEKLRMLSIVTLAHTSKVVPYATIKAALGMDNVRHLEDIIFDTIYAGLLQGKLDQRQEVLKVKYAVARDVSLNDLGTIITKLGNWASTTQVLLTTLEGSVEEAAASRQREAHTAERLAVEAAEVKKNITENGGKQRDDDGYHDLGFDVDTDRSSVR-RGRTKRNRAGMSD 765
            M+E G  L QF +LAKTAK  A V LI+Q L+++KIFVFGELL M N+QAL  T H  +LRLLE+FAYGTY+   A+ D+ P ++  Q EKLR LSIV+LAHT K VPY  ++A L ++NVR LED+I DTIY GL+ GK+DQ   VLKVK AV RDV   D+  +I+KL +W      +L T+  S   AAA R   A     +A E  +VKKN+ +       + G    G ++D DR + R   R KR+R   +D
Sbjct:    2 MAEGGAALEQFCLLAKTAKSRAAVELIKQALTNRKIFVFGELLFMDNMQALRDTEHAEYLRLLELFAYGTYSQYLAQRDQYPDMNAAQTEKLRQLSIVSLAHTQKKVPYEVLQAELAINNVRELEDLIIDTIYTGLVTGKMDQTTGVLKVKSAVPRDVKPEDVDAMISKLTDWRDKCDAILKTMAASQAHAAAERDEHAKAKLAVAEEIDDVKKNLKDRLPTDLREGGSRYAGDEMDVDRPNRRLASRGKRSRVPYAD 259
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BLAST of mRNA_H-elongata_contig16976.4330.1 vs. uniprot
Match: A0A835YQX8_9STRA (PCI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX8_9STRA)

HSP 1 Score: 196 bits (497), Expect = 2.960e-59
Identity = 104/188 (55.32%), Postives = 134/188 (71.28%), Query Frame = 1 
Query:   13 GLVQFLVLAKTAKGAACVALIQQVLSHKKIFVFGELLAMPNVQALTGTPHEPHLRLLEVFAYGTYADAQAKLDELPKLSGFQAEKLRMLSIVTLAHTSKVVPYATIKAALGMDNVRHLEDIIFDTIYAGLLQGKLDQRQEVLKVKYAVARDVSLNDLGTIITKLGNWASTTQVLLTTLEGSVEEAAAS 576
            GL Q+ +LAKTAKG ACVALIQ+V++ KKIFVFGELLAMPNVQ L GT HEP+LRLLE+FAYG Y D +A    LP+LS    EKLRML++V LA+TS+VVPY  ++ ALG+ +VR +ED++ D +YAGLLQ +LDQR   L+V++   RDV   ++ ++I  L  WA  T   L  L   V  A A+
Sbjct:    9 GLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNVQGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVVALANTSRVVPYGKLQEALGVSSVRVVEDVVLDAMYAGLLQCRLDQRAGTLRVQHVTPRDVRPEEIDSMIATLDMWAGATDRALRGLRKGVNSAKAA 196
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BLAST of mRNA_H-elongata_contig16976.4330.1 vs. uniprot
Match: A0A7S2RP08_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RP08_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.700e-57
Identity = 116/244 (47.54%), Postives = 152/244 (62.30%), Query Frame = 1 
Query:   22 QFLVLAKTAKGAACVALIQQVLSHKKIFVFGELLAMPNVQALTGTPHEPHLRLLEVFAYGTYADAQAKLDELPKLSGFQAEKLRMLSIVTLAHTSKVVPYATIKAALGMDNVRHLEDIIFDTIYAGLLQGKLDQRQEVLKVKYAVARDVSLNDLGTIITKLGNWASTTQVLLTTLEGSVEEAAASRQREAHTAERLAVEAAEVKKNITENGGKQRDDDGYHDLGFDVDTDRSSVRRG-RTKRNR 750
            +F +LAK+ +G A VALI+Q LS KK+FV GELLAM N+QAL GT  E HLRLLE+FAYGTY++ QA  D+LP+L+    EKLR LSIV+LAHT K V Y  ++  L + NVR LED+I DTIYAGL+ GKLDQ   +L V+ AVARDV   ++G +I KL  W S  + L+  L+ ++     +RQ E    + +  +  E  K +         D   H  G + D    S+RRG  TKR R
Sbjct:   29 RFCLLAKSQRGRAVVALIEQALSSKKVFVVGELLAMDNIQALRGTEFEAHLRLLELFAYGTYSEYQAAKDQLPELNSNMKEKLRALSIVSLAHTKKQVTYTELQQELAITNVRELEDLIIDTIYAGLVDGKLDQANGMLNVRSAVARDVRPEEVGEMIQKLTQWGSDMEQLIAALDKNMAHVNEARQGETKLRQEVRAKVEETTKKLK--------DKSLHGSGDEEDERERSMRRGAHTKRMR 264
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BLAST of mRNA_H-elongata_contig16976.4330.1 vs. uniprot
Match: F0YEG3_AURAN (PCI domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEG3_AURAN)

HSP 1 Score: 188 bits (478), Expect = 2.060e-56
Identity = 107/198 (54.04%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:    1 MSEEG---LVQFLVLAKTAKGAACVALIQQVLSHKKIFVFGELLAMPNVQALTGTPHEPHLRLLEVFAYGTYADAQAKLDELPKLSGFQAEKLRMLSIVTLAHTSKVVPYATIKAALGMDNVRHLEDIIFDTIYAGLLQGKLDQRQEVLKVKYAVARDVSLNDLGTIITKLGNWASTTQVLLTTLEGSVEEAAASRQR 585
            M+E+G   L QF +LAK+AKG A V +IQQ LS K+I+VFGELLAMP+VQAL GT H PHL LLE+FA+GTY D +AK D +P L+  Q  KLR LS+V+LA  S VV YAT++  L +DNVR LED I +TIYAGLL GK+DQ     +V  A  RDV L+ +G +  KL  WA+T   L   LE +   A A R +
Sbjct:    1 MAEDGSQALEQFCLLAKSAKGRAVVGIIQQTLSSKRIYVFGELLAMPSVQALRGTEHAPHLDLLEIFAFGTYGDYRAKGDAMPPLTPAQLTKLRQLSLVSLARESAVVAYATMQEELAVDNVRDLEDAIIETIYAGLLSGKMDQMSAEFRVAKAAGRDVKLDAVGDLAAKLEAWAATAGQLSAELEENKASAKAMRDQ 198
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BLAST of mRNA_H-elongata_contig16976.4330.1 vs. uniprot
Match: A0A7R9UCJ6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCJ6_9STRA)

HSP 1 Score: 189 bits (480), Expect = 6.410e-56
Identity = 101/180 (56.11%), Postives = 126/180 (70.00%), Query Frame = 1 
Query:   10 EGLVQFLVLAKTAKGAACVALIQQVLSHKKIFVFGELLAMPNVQALTGTPHEPHLRLLEVFAYGTYADAQAKLDELPKLSGFQAEKLRMLSIVTLAHTSKVVPYATIKAALGMDNVRHLEDIIFDTIYAGLLQGKLDQRQEVLKVKYAVARDVSLNDLGTIITKLGNWASTTQVLLTTLE 549
            + L QF+ LAKTAKGAACVALIQQVL+H K+FVFGELL MPNVQAL GT H+P+LRLLE+FAYGT ADAQ   + LP +S  Q  KLR LSI++ A T   + Y  +  AL +DNVR LED++ D IYA L+  KL+QR+ V+++   VARDV  +DL  I  KL  W   T  +L  L+
Sbjct:   21 DALEQFVSLAKTAKGAACVALIQQVLNHPKVFVFGELLLMPNVQALRGTEHQPYLRLLELFAYGTMADAQGAKEALPTMSEAQEAKLRKLSILSAAQTQGTLDYDQLMPALQVDNVRDLEDVVIDAIYADLIDAKLNQRERVVRIHRCVARDVRSDDLSAIKEKLKAWNRNTSEVLQALK 200
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BLAST of mRNA_H-elongata_contig16976.4330.1 vs. uniprot
Match: A0A4D9D7R0_9STRA (PCI domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7R0_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.540e-54
Identity = 99/184 (53.80%), Postives = 133/184 (72.28%), Query Frame = 1 
Query:   16 LVQFLVLAKTAKGAACVALIQQVLSHKKIFVFGELLAMPNVQALTGTPHEPHLRLLEVFAYGTYADAQAKLDELPKLSGFQAEKLRMLSIVTLAHTSKVVPYATIKAALGMD-NVRHLEDIIFDTIYAGLLQGKLDQRQEVLKVKYAVARDVSLNDLGTIITKLGNWASTTQVLLTTLEGSVEE 564
            L QF +LAK+AKG ACVALIQQVLS +KI VFGELLAMPN++AL G+ HEP+LRLLE+FAYGTYAD Q +   LP L+  Q  KL+ L++VTLA   + +PYA +   L +D +VR LED+I ++IY G+L G+LDQR  + ++K A+ RDV L D+  ++ KL  W +  + LLT+LE  + E
Sbjct:   10 LEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHESIPYAVLFRELDIDGDVRELEDLIIESIYMGVLTGRLDQRGGLFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSE 193
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BLAST of mRNA_H-elongata_contig16976.4330.1 vs. uniprot
Match: A0A7S2UVG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVG8_9STRA)

HSP 1 Score: 183 bits (464), Expect = 3.020e-54
Identity = 99/189 (52.38%), Postives = 130/189 (68.78%), Query Frame = 1 
Query:   16 LVQFLVLAKTAKGAACVALIQQVLSHKKIFVFGELLAMPNVQALTGTPHEPHLRLLEVFAYGTYADAQAKLDELPKLSGFQAEKLRMLSIVTLAHTSKVVPYATIKAALGMDNVRHLEDIIFDTIYAGLLQGKLDQRQEVLKVKYAVARDVSLNDLGTIITKLGNWASTTQVLLTTLEGSVEEAAASRQ 582
            L +F++LAK AKG ACVALIQQVL++ ++FVFGELLA PNVQAL GT HE HLRLLE+FAYGTY+D       LP+L+  Q  KLR LS+V+LA  SKV+ Y  +   L ++NVR LED++ +TIY GL+ GKLDQ   VLKV    ARDV  +++  ++ +L +W+  TQ L+  L    E   + RQ
Sbjct:   11 LERFVILAKNAKGRACVALIQQVLNNNRVFVFGELLASPNVQALAGTEHELHLRLLELFAYGTYSDYHENRSSLPELTPAQRTKLRQLSLVSLASASKVLRYEELMKELQLENVRELEDLVIETIYVGLVLGKLDQLGGVLKVSAVGARDVRPSEVPHLLHRLQHWSQVTQALVQELGTCAETVVSKRQ 199
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BLAST of mRNA_H-elongata_contig16976.4330.1 vs. uniprot
Match: V9EG37_PHYPR (PCI domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=V9EG37_PHYPR)

HSP 1 Score: 182 bits (463), Expect = 2.300e-53
Identity = 94/167 (56.29%), Postives = 118/167 (70.66%), Query Frame = 1 
Query:   13 GLVQFLVLAKTAKGAACVALIQQVLSHKKIFVFGELLAMPNVQALTGTPHEPHLRLLEVFAYGTYADAQAKLDELPKLSGFQAEKLRMLSIVTLAHTSKVVPYATIKAALGMDNVRHLEDIIFDTIYAGLLQGKLDQRQEVLKVKYAVARDVSLNDLGTIITKLGNW 513
            GL QF +LAK A+G ACVALIQQVLS+KK+FVF ELL MPNV+AL  + H  H  LL +F++GTY D  A+ DELP L+  Q  KLR L++V+LAH  K +PY T+   LG+  VR +EDI+ DTIY+GL+QGKLDQ+     VKYAV RD    D+  +I KL NW
Sbjct:   10 GLEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEHMEHYELLRIFSFGTYNDYLARKDELPDLTPQQMNKLRKLTVVSLAHRFKNIPYDTLIQDLGVSTVREVEDILIDTIYSGLVQGKLDQKSRCFVVKYAVGRDTRHEDIDDMIQKLSNW 176
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BLAST of mRNA_H-elongata_contig16976.4330.1 vs. uniprot
Match: A0A3F2RJW9_9STRA (PCI domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJW9_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.340e-51
Identity = 105/223 (47.09%), Postives = 145/223 (65.02%), Query Frame = 1 
Query:   16 LVQFLVLAKTAKGAACVALIQQVLSHKKIFVFGELLAMPNVQALTGTPHEPHLRLLEVFAYGTYADAQAKLDELPKLSGFQAEKLRMLSIVTLAHTSKVVPYATIKAALGMDNVRHLEDIIFDTIYAGLLQGKLDQRQEVLKVKYAVARDVSLNDLGTIITKLGNW-ASTTQV---LLTTLEGSVEEAAASRQREAHTAERLAVEAAEVKKNITENGGKQRDD 672
            L QF +LAK A+G ACVALIQQVLS+KK+FVF ELL MPNV+AL  + +  H  LL +F +GTY++  A  +ELP+L+  Q  KLR L+ V+LAH  K +PY T+   LG+ +VR +EDI+ DTIY+GLLQGKLDQ+     VKYAV RD    D+ ++I KL NW A +T++   + T L  + +     R RE     ++A  A+E +K+   +G   R+D
Sbjct:   11 LEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEYSGHYELLRIFCFGTYSEYAAHKEELPELTPQQVNKLRKLTAVSLAHRYKNIPYNTLMQDLGVSSVREVEDILIDTIYSGLLQGKLDQKSSCFAVKYAVGRDTHHADIDSMIEKLTNWKAKSTEINEKINTILRMAEKREEDERVREESIRNKMAARASE-RKSSAGSGPNFRED 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16976.4330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUU8_ECTSI2.130e-10674.43PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2CC19_9STRA1.770e-6148.06Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YQX8_9STRA2.960e-5955.32PCI domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2RP08_9STRA1.700e-5747.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YEG3_AURAN2.060e-5654.04PCI domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7R9UCJ6_9STRA6.410e-5656.11Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9D7R0_9STRA1.540e-5453.80PCI domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2UVG8_9STRA3.020e-5452.38Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
V9EG37_PHYPR2.300e-5356.29PCI domain-containing protein n=12 Tax=Phytophthor... [more]
A0A3F2RJW9_9STRA1.340e-5147.09PCI domain-containing protein n=4 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16976contigH-elongata_contig16976:1535..6165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.9
Seed ortholog evalue5.7e-85
Seed eggNOG ortholog2880.D7FUU8
Preferred nameCOPS7B
KEGG koko:K12180,ko:K12818
KEGG Pathwayko03040,map03040
GOsGO:0000003,GO:0000338,GO:0000715,GO:0002009,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0008150,GO:0008152,GO:0008180,GO:0008283,GO:0008356,GO:0009653,GO:0009888,GO:0009987,GO:0010387,GO:0016043,GO:0016333,GO:0019538,GO:0019827,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030718,GO:0030727,GO:0031647,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034399,GO:0034622,GO:0034641,GO:0036099,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046483,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048609,GO:0048646,GO:0048729,GO:0048856,GO:0048869,GO:0050821,GO:0050896,GO:0051276,GO:0051301,GO:0051704,GO:0051716,GO:0060429,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0090304,GO:0098727,GO:1901360,GO:1901564
EggNOG free text desc.protein deneddylation
EggNOG OGsKOG3250@1,KOG3250@2759
EC3.6.4.13
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProteasome component (PCI) domain
Ec32 orthologEc-06_001170.1
Exons6
Model size786
Cds size786
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16976.4330.1prot_H-elongata_contig16976.4330.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16976 1535..6165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929990.6345594-CDS-H-elongata_contig16976:1534..16781622929990.6345594-CDS-H-elongata_contig16976:1534..1678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16976 1535..1678 +
1691679237.1367507-CDS-H-elongata_contig16976:1534..16781691679237.1367507-CDS-H-elongata_contig16976:1534..1678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16976 1535..1678 +
1622929990.6508884-CDS-H-elongata_contig16976:2736..28501622929990.6508884-CDS-H-elongata_contig16976:2736..2850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16976 2737..2850 +
1691679237.1559677-CDS-H-elongata_contig16976:2736..28501691679237.1559677-CDS-H-elongata_contig16976:2736..2850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16976 2737..2850 +
1622929990.6651852-CDS-H-elongata_contig16976:3181..33641622929990.6651852-CDS-H-elongata_contig16976:3181..3364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16976 3182..3364 +
1691679237.171638-CDS-H-elongata_contig16976:3181..33641691679237.171638-CDS-H-elongata_contig16976:3181..3364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16976 3182..3364 +
1622929990.6812305-CDS-H-elongata_contig16976:5054..51621622929990.6812305-CDS-H-elongata_contig16976:5054..5162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16976 5055..5162 +
1691679237.1820536-CDS-H-elongata_contig16976:5054..51621691679237.1820536-CDS-H-elongata_contig16976:5054..5162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16976 5055..5162 +
1622929990.6923525-CDS-H-elongata_contig16976:5421..55411622929990.6923525-CDS-H-elongata_contig16976:5421..5541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16976 5422..5541 +
1691679237.1955347-CDS-H-elongata_contig16976:5421..55411691679237.1955347-CDS-H-elongata_contig16976:5421..5541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16976 5422..5541 +
1622929990.7093916-CDS-H-elongata_contig16976:6048..61651622929990.7093916-CDS-H-elongata_contig16976:6048..6165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16976 6049..6165 +
1691679237.206769-CDS-H-elongata_contig16976:6048..61651691679237.206769-CDS-H-elongata_contig16976:6048..6165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16976 6049..6165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16976.4330.1

>prot_H-elongata_contig16976.4330.1 ID=prot_H-elongata_contig16976.4330.1|Name=mRNA_H-elongata_contig16976.4330.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=262bp
MSEEGLVQFLVLAKTAKGAACVALIQQVLSHKKIFVFGELLAMPNVQALT
GTPHEPHLRLLEVFAYGTYADAQAKLDELPKLSGFQAEKLRMLSIVTLAH
TSKVVPYATIKAALGMDNVRHLEDIIFDTIYAGLLQGKLDQRQEVLKVKY
AVARDVSLNDLGTIITKLGNWASTTQVLLTTLEGSVEEAAASRQREAHTA
ERLAVEAAEVKKNITENGGKQRDDDGYHDLGFDVDTDRSSVRRGRTKRNR
AGMSDFRPRNK*
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mRNA from alignment at H-elongata_contig16976:1535..6165+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16976.4330.1 ID=mRNA_H-elongata_contig16976.4330.1|Name=mRNA_H-elongata_contig16976.4330.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4631bp|location=Sequence derived from alignment at H-elongata_contig16976:1535..6165+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGAGGAGGGACTGGTGCAGTTCTTGGTGCTAGCGAAGACCGCGAA
AGGCGCGGCGTGCGTGGCGCTCATCCAGCAAGTGTTGAGCCACAAGAAGA
TCTTCGTGTTCGGGGAGCTCTTGGCGATGCCTAACGTCCAAGCAGTGAGA
ACACCCGGCAAAGTCTCTCCATCCCCCCCCCCTCATCCTCCCTCTCTCCC
TCCCCAGGACCCGTGGTCAATGGTCTAACAGTGAATACATACAAAAAATA
AATTTAGCAAACTTCCCGCTCCTAGTTTCGTGCTCTGCGATCATCGGAGA
CTCTGCTGTGTTGGGAGTGTTTAGTTTGGAGGGGTGTGCGAAGGGCGAAG
TTTCCCGTTGCCCCTATGGGGGAAAGAAGGACGACTACGACCCGCCTCCG
GTTTGGAGTAACTTGTGCGCTAGCGACATCCGCTTCTGGTTGACCGTCGT
GGTGGTGGCGTAAAGGTGTTGGTGTTCTGTATGGGGTCTATCGCACCGAG
TACAGAACGGTTTGGGGTCTATCGCACATCTGTTGGGATTTCGGTCGTCA
CCCCCACTCCCTCCAACTCTGCAAGGGGGAGATCCTGTAGTATGTCTCTC
TCCCCCCTAAGGGATGAAACATATAATATTTTACCTGGTATAGGATGTCT
GCTGAACAAGATATTGCCGGAAAGCTCTTCACCAACCGTAGATTTGCTGT
ATTAACCCTTCTGGAACTGGATTTCAAGTTTTATATTGAATTTAGAATTA
AAAAAACAGATCGAGTTCCATAGGGGTTAAATCATTTTCCCCAAGAGTAT
TCATGGGCGATATCAATAGTCTTGAGAGTATCAAGTATGTACCGCTGTGT
ACGCAGTGTGCGTGTGGCTCTTATGCATTTATGCCGAGATCAAAGGATTA
TCCCACCCGCTGAATGTATAGCAGCATTGTATTACCATTTGCACATCCGG
TTTGTCGCAACAAACGCAAAAAAGGTGACTAAAGGCTGGTATCATCCCCG
TCAAACCCAGCCTGGCCGGTGAAAAACCAGCATATCGATACTCCTCCGTA
CCGGCGCTGTTCGGATGCGTTGTCTGCGTTCCTTTTGATACGATATACTA
CGTTTAACATCAATACCCTCCCCGAATCCCGACCCCTGCCCCCACCAACG
TGGATCCACCGCGTGGCCTTATGGGTGGCTATGACGTGGCGCGTCTCACC
AGCTGACCGGAACACCGCACGAGCCGCATTTGCGTCTCCTGGAAGTGTTC
GCTTACGGCACGTACGCTGATGCGCAGGCGAAACTCGATGAGCTCCCCAA
GCTCTCCGGGTTTCAGGTGATTCCGCAACGTCATACATTGGCGATGGGGG
GTTGACTCTGAAAAGTCTTCAGTAAGCGCGCGGCTGAAACGAATTAGACA
CAAAAATATATACCCTAGCATAACAATATAATAACAGAAAACTGGTGCAC
CATCCATGTCCGTCTTGCCGTTTGTGAAATCTCCCGCGCTCCCTTCCAGA
TCCGATTACATCTCGAGATAATCTGGTTTTTTATGATGTGTTTTGTTTGA
TTGCCTATCCAATGATATATAGGTATATATTTTGAAGAAAACTAACCAAG
CGACAGTTCGTCTCTCTCCGGAATGTGCTGTTTGCTCTCGGGGCTAGGCG
GAAAAGCTGCGCATGCTCAGCATCGTGACGCTGGCGCACACGAGCAAGGT
GGTGCCTTACGCCACCATCAAGGCCGCGCTCGGCATGGACAACGTGCGGC
ATCTCGAGGATATAATTTTCGACACCATCTACGCGGGGCTGCTACAGGGA
AAGCTGGATCAACGGCAAGAAGTGCTGAAGGTGCGGTGGTAGATGGTGGA
TGATCCCGTTAGGCATATTACTACCCGTCGGAGAACGCCTCCGTGTGATG
CTATTAGTAGCGCCCACTCTTTTGAGGAATCCCTATATGCACACCTCTCA
AGCAAACGTTCGCAAAGTACTTATTGCCTACCATAAACTAATACCCAGAG
CCGATGGCTGCGCACCCAGCACTCCGCCTCGGAGAGGATGGGGTATAAAG
GGACGGGTTAGGCCCTGGTTGGGTCCACGAAATACTGAAGAGCTTGAAAT
GCGCCAGAATTCTCTGAATCCGTACACCGCACCCGTTCAGCGAGAGCACA
GCGCAAGGCTGCGCGCCCAGCACTCCTCTTCAGGGGCAACAAGGTGCCGG
ATAAATGTTCTTAGGCCTGGAGCTACAGGCTTACTACATTTCAACCTCTT
AACTATTTCGTTAACCCAACACGAACCTAATCACAACCCGAACCCAAACC
CAAACCCATATATCCCATCTCCCTCGAGGAGGAGTGCTCTGGGTGCGCAG
CCCTGAGCTCCTGCTGTCTCGGGGCTTGCGAGTGTTAACGTTTACACAAA
AATTGACGTGTAGGCCAAGTGTGTATATAGGGATTCCCGTTTTTTTGCGT
CGATGTCATGGCTTCGTATAAATTGTAAACTATTATAGCTATGTTCTATG
TAATGTATATCATCGTAGGCTATGTTTCCTTCTCGAGCAAATGGATCGGC
TTGATTTGCGATGTGTGGGTAACAAGAATAAGAACCTCTCCCTTAAGAAT
TTATATATTTTTAATAAATTTGCGTTAGACCGCACAAACCAGCATGGCAC
GTAAGGGAGCGCCGCATCGGTTTGCAAATACCCCTTTACCCTCCTTCTTT
CCTCTATTAGGAACTATCCCTGAAGACATCGGTTTGGCCTCAGTCTTTCT
CGAGAAAGTTGGCCCGTCAGGTTCAGTGGGTAGACGGTATCCCAAGGCTT
TCTTTAGTTTGTTGACGAGTTGTTGCTTTTGTTTTGGTGATTTAATGGAC
CACGAGAACAAGAAACTAAAATAAGAAAAAATAATTATCCCCGGCAAAAA
CAACCCATAGCTCTCGGGGGCCCCAGGTTTCCCGTAGCGGCCAGGCTCCT
TAACTGACAGCTGTCGGAGGGCTGGACGAAGTCGACCTTTGCGGTCGCTG
CCGGAGGCACCCCTGGACAGCCTTAAATGGGGAAAATTAGAGTCCTAGAG
ACCAGAGAAAAATGTCTCACCCTTATACGAATTGAGGCATTAATAGTCTA
ACTAAATAAAGTATTAATTATTAATAGTTCGTCCCCGAGGAGGTCAATGT
GTAACCACAAAGCCTGCTACAGGTGGTTTTAATAAAAGTGGAGAAATCGT
GGGTTTGAAAATAAACCCCGCAGGTTTGATTATTTTTCTACAGTCCTGTA
TAATCTATATAGCCAGTCATAGTCTAAAACGTAAGTGATGAAAGTTCAAC
CATTGTTAGTTGTCGAGGTAATATCAGTGCTGTCTGTCTTTGCATGATTT
CGTTTTTTCCCGCCATGTGCAAACTCAAATTTCTGGTGTAATTTCTGGTG
ATGGTGATGATGACTACCCCCCCACCCTCGACAGCATTCTTGTTTATTTC
TAGTACACTTTTTGGGGTGAATTTAGCACTGCGGCTGTGCGTGCTTGGTC
TCTCTTTCCGACTCCTACAGGTCAAGTACGCCGTCGCGAGGGATGTAAGC
CTGAACGATCTGGGGACCATAATCACCAAGCTCGGGAACTGGGCGAGCAC
GACGCAGGTCTTGCTGACCACCTTGGAGGTGAGAAAGGAGGACCGGATTC
CGCGGGTCGCATTTACTGGATTGGGAGTCACCGAGAGGGCAGGATGAGAT
ACTGACAGCGGCGATCGACAGAAGCGGTTGATTTCCACAAGAGTCTTTTC
CCCTGCATTCCTGTGCTGCGAGTTAAAGATGTTTCGTGGTTTGCTTTCTG
CGAAACACGAAAACGATCACAAAGCGGATCGGAAGGCGTTTCTGTTCTTG
TGTTCCTTCTTTAAGAGCGCTCGATTTTTCGCGACAGGGAAGCGTCGAAG
AGGCCGCAGCCTCCCGGCAGCGCGAGGCACATACTGCGGAGCGCTTGGCG
GTGGAGGCGGCAGAGGTCAAGAAAAACATCACCGAGAACGGGGGCAAGCA
GCGCGACGTGAGTCATCCACAGCGATCCCCCTCCCTCCCTCCCCTCCCTC
TTCCCGATGGTTCTCGAGCAGCTCGGCGCTTACAGCCTCTGCGGTTGATA
GTCTGGCGCGAGAGGACTCGCCGCCCCGGGGCGGCCTGTCATATACTATA
ATAATTATTATTATAGTCGATGTTTTCAATACTATTTCAGTTGTCCTGTA
AAAAAAACGCTTATCCGTGAAGCTATCCGGGCGCGTTCCGTAACAGTGCA
GCTTCCGGGAATAATTTCCATGTACATGTGTAATGGTACGTAATCAAGAT
CGATCGGTTTCGCCCATCGAAGTCTTGCGCGCGTTCCAATGCGTGCCGAA
GTGGAGAACCACATTAGCGGTACCTAAGAGAATCAATTGAAGTAAAATAA
AGCATCTGGGGATGTAGTCTAGTCACGTCATTACTATATCCAATCACGCC
AACAGAAAAAGCGGTCTTTTCAGGAATGCCTCGGTGCTTCTCTACCCTTG
GCTTATCTTGGCAGGACGATGGGTACCACGATTTGGGCTTTGACGTAGAC
ACGGATCGATCAAGCGTTCGCCGGGGGAGGACCAAACGCAACCGAGCGGG
AATGTCGGACTTTAGGCCGAGGAACAAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig16976:1535..6165+

>mRNA_H-elongata_contig16976.4330.1 ID=mRNA_H-elongata_contig16976.4330.1|Name=mRNA_H-elongata_contig16976.4330.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1572bp|location=Sequence derived from alignment at H-elongata_contig16976:1535..6165+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGAGGAGGGACTGGTGCAGTTCTTGGTGCTAGCGAAGACCGCGAA
AGGCGCGGCGTGCGTGGCGCTCATCCAGCAAGTGTTGAGCCACAAGAAGA
TCTTCGTGTTCGGGGAGCTCTTGGCGATGCCTAACGTCCAAGCAATGTCC
GAGGAGGGACTGGTGCAGTTCTTGGTGCTAGCGAAGACCGCGAAAGGCGC
GGCGTGCGTGGCGCTCATCCAGCAAGTGTTGAGCCACAAGAAGATCTTCG
TGTTCGGGGAGCTCTTGGCGATGCCTAACGTCCAAGCACTGACCGGAACA
CCGCACGAGCCGCATTTGCGTCTCCTGGAAGTGTTCGCTTACGGCACGTA
CGCTGATGCGCAGGCGAAACTCGATGAGCTCCCCAAGCTCTCCGGGTTTC
AGCTGACCGGAACACCGCACGAGCCGCATTTGCGTCTCCTGGAAGTGTTC
GCTTACGGCACGTACGCTGATGCGCAGGCGAAACTCGATGAGCTCCCCAA
GCTCTCCGGGTTTCAGGCGGAAAAGCTGCGCATGCTCAGCATCGTGACGC
TGGCGCACACGAGCAAGGTGGTGCCTTACGCCACCATCAAGGCCGCGCTC
GGCATGGACAACGTGCGGCATCTCGAGGATATAATTTTCGACACCATCTA
CGCGGGGCTGCTACAGGGAAAGCTGGATCAACGGCAAGAAGTGCTGAAGG
CGGAAAAGCTGCGCATGCTCAGCATCGTGACGCTGGCGCACACGAGCAAG
GTGGTGCCTTACGCCACCATCAAGGCCGCGCTCGGCATGGACAACGTGCG
GCATCTCGAGGATATAATTTTCGACACCATCTACGCGGGGCTGCTACAGG
GAAAGCTGGATCAACGGCAAGAAGTGCTGAAGGTCAAGTACGCCGTCGCG
AGGGATGTAAGCCTGAACGATCTGGGGACCATAATCACCAAGCTCGGGAA
CTGGGCGAGCACGACGCAGGTCTTGCTGACCACCTTGGAGGTCAAGTACG
CCGTCGCGAGGGATGTAAGCCTGAACGATCTGGGGACCATAATCACCAAG
CTCGGGAACTGGGCGAGCACGACGCAGGTCTTGCTGACCACCTTGGAGGG
AAGCGTCGAAGAGGCCGCAGCCTCCCGGCAGCGCGAGGCACATACTGCGG
AGCGCTTGGCGGTGGAGGCGGCAGAGGTCAAGAAAAACATCACCGAGAAC
GGGGGCAAGCAGCGCGACGGAAGCGTCGAAGAGGCCGCAGCCTCCCGGCA
GCGCGAGGCACATACTGCGGAGCGCTTGGCGGTGGAGGCGGCAGAGGTCA
AGAAAAACATCACCGAGAACGGGGGCAAGCAGCGCGACGACGATGGGTAC
CACGATTTGGGCTTTGACGTAGACACGGATCGATCAAGCGTTCGCCGGGG
GAGGACCAAACGCAACCGAGCGGGAATGTCGGACTTTAGGCCGAGGAACA
AGTAGGACGATGGGTACCACGATTTGGGCTTTGACGTAGACACGGATCGA
TCAAGCGTTCGCCGGGGGAGGACCAAACGCAACCGAGCGGGAATGTCGGA
CTTTAGGCCGAGGAACAAGTAG
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