mRNA_H-elongata_contig16968.4324.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16968.4324.1 vs. uniprot
Match: D8LLL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL1_ECTSI) HSP 1 Score: 324 bits (830), Expect = 2.340e-100 Identity = 161/216 (74.54%), Postives = 191/216 (88.43%), Query Frame = 1
Query: 325 MNSPAAKRQRQVDHNESIRNINVVKIGLSIMCPSDSMGMLIGKGGSGLRELQNNSGVKVSLQETKSMPEGAKERGVGLSGALECVSNVERIIFDKLNARRVTALAPSPAEEEFENAYQEAKAAGLDPNGLEDANP-DDPSRITVVRWIMSNTQCGWLIGKGGSGIQNIESTSGAQVRVASEKSTSKATGERIVYIKGNLDQREKALDIIRNNPKVT 969
M PAAKR+R V+H+ES+RNI VVK GLSIMCPSD+MGMLIGKGGSGLRE+Q +GVKVSLQETKS+PEGAKERGVGLSG+L+CV+NVE++IF+KLNARRVT+LAPSPAEEEFE AY+ AKAAG++PNG D + +DP++ITVVRWIM N CGWLIGKGGSGIQNIE+TSGAQVRVA+E+S K + ERIVY+KGN QRE AL++IR NPK+T
Sbjct: 72 MTPPAAKRRRSVEHHESVRNITVVKGGLSIMCPSDAMGMLIGKGGSGLREMQEKTGVKVSLQETKSIPEGAKERGVGLSGSLDCVANVEKLIFEKLNARRVTSLAPSPAEEEFEMAYEAAKAAGIEPNGATDVSDMNDPNKITVVRWIMDNAHCGWLIGKGGSGIQNIEATSGAQVRVATERSLGKDSAERIVYVKGNKSQREAALELIRTNPKIT 287
BLAST of mRNA_H-elongata_contig16968.4324.1 vs. uniprot
Match: A0A6H5KI98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI98_9PHAE) HSP 1 Score: 324 bits (830), Expect = 7.980e-99 Identity = 161/216 (74.54%), Postives = 191/216 (88.43%), Query Frame = 1
Query: 325 MNSPAAKRQRQVDHNESIRNINVVKIGLSIMCPSDSMGMLIGKGGSGLRELQNNSGVKVSLQETKSMPEGAKERGVGLSGALECVSNVERIIFDKLNARRVTALAPSPAEEEFENAYQEAKAAGLDPNGLEDANP-DDPSRITVVRWIMSNTQCGWLIGKGGSGIQNIESTSGAQVRVASEKSTSKATGERIVYIKGNLDQREKALDIIRNNPKVT 969
M PAAKR+R V+H+ES+RNI VVK GLSIMCPSD+MGMLIGKGGSGLRE+Q +GVKVSLQETKS+PEGAKERGVGLSG+L+CV+NVE++IF+KLNARRVT+LAPSPAEEEFE AY+ AKAAG++PNG+ D +DP++ITVVRWIM N CGWLIGKGGSGIQNIE+TSGAQVRVA+E+S K + ERIVY+KGN QRE AL++IR NPK+T
Sbjct: 1 MTPPAAKRRRSVEHHESVRNITVVKGGLSIMCPSDAMGMLIGKGGSGLREMQEKTGVKVSLQETKSIPEGAKERGVGLSGSLDCVANVEKLIFEKLNARRVTSLAPSPAEEEFEMAYEAAKAAGMEPNGIADVGDMNDPNKITVVRWIMDNAHCGWLIGKGGSGIQNIEATSGAQVRVATERSLGKDSAERIVYVKGNKAQREAALELIRTNPKIT 216
BLAST of mRNA_H-elongata_contig16968.4324.1 vs. uniprot
Match: A0A7S3XK83_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XK83_HETAK) HSP 1 Score: 83.6 bits (205), Expect = 5.110e-14 Identity = 54/183 (29.51%), Postives = 96/183 (52.46%), Query Frame = 1
Query: 406 LSIMCPSDSMGMLIGKGGSGLRELQNNSGVKVSLQETKSMPEGAKERGVGLSGALECVSNVERIIFDKLNARRVTALAPSPAEEEFENAYQEAKAAGLDPNGLEDANPDDPSRITVVRWIMSNTQCGWLIGKGGSGIQNIESTSGAQVRVASEKSTSKATGERIVYIKGNLDQREKALDIIRN 954
++++ P + +G +IGKGGS +R+LQ ++ V LQE ++PEGA ERGV LSG ++ + + +R I ++ R GLE D+ T +W++ + + G +IGK G+GI+ ++ +GA + VA+ K T +R+V ++G+ EKA ++ +
Sbjct: 7 ITLLFPIEGIGTIIGKGGSTIRQLQRDAECNVRLQEPSTVPEGAAERGVTLSGPVDHMLDAQRRILAVIDQER---------------------------RGLEGQAEDEGDEKTH-KWLIPDHRAGLVIGKRGAGIEELKKKTGAHIWVAAVYEMPKGTEDRLVTVRGDEAACEKARKMLED 161
BLAST of mRNA_H-elongata_contig16968.4324.1 vs. uniprot
Match: A9RYT2_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RYT2_PHYPA) HSP 1 Score: 68.9 bits (167), Expect = 4.710e-9 Identity = 51/188 (27.13%), Postives = 92/188 (48.94%), Query Frame = 1
Query: 412 IMCPSDSMGMLIGKGGSGLRELQNNSGVKVSLQETK----------SMPEGAKERGVGLSGALECVSNVERIIFDKLNARRVTALAPSPAEEEFENAYQEAKAAGLDPNGLEDANPDDPSRITVVRWIMSNTQCGWLIGKGGSGIQNIESTSGAQVRVASEKSTSKAT--GERIVYIKGNLDQREKAL 939
I+CP+ +G +IGKGGS ++ L+ SG K+ + + S + +RG G G E ++ + +F K++AR + + + +G+D + E ++PS+ V R ++ N Q G L+GKGG I+ + T+GAQ+RV + + +V + G++ +KAL
Sbjct: 7 ILCPAPKIGSVIGKGGSIIKTLRQESGAKIKIADAIPGVDERVILISSTDRGNDRGRGKDGNSEELTPAQEALF-KVHARIIA----------------DVETSGIDGSDQE----EEPSQQVVTRLLVPNNQIGCLLGKGGKIIEQMRQTTGAQIRVLPKDQLPGCALPTDELVQVSGDVSTLKKAL 173
BLAST of mRNA_H-elongata_contig16968.4324.1 vs. uniprot
Match: A0A0P0XB22_ORYSJ (Os08g0110800 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0XB22_ORYSJ) HSP 1 Score: 68.2 bits (165), Expect = 4.940e-9 Identity = 54/181 (29.83%), Postives = 82/181 (45.30%), Query Frame = 1
Query: 412 IMCPSDSMGMLIGKGGSGLRELQNNSGVKVSLQETKSMPEGAKERGVGLSGALECVSNVERIIFDKLNARRVTALAPSPAEEEFENAYQEAKAAGLDPNGLEDANPDDPSRITVVRWIMSNTQCGWLIGKGGSGIQNIESTSGAQVRVASEKSTSKAT-GERIVYIKGNLDQREKALDIIR 951
I P++ +G+LIGK G +R LQ NSG K+ + + A R V L G LE + ER+I +N EA A G P + S ++ + + G +IGKGG I+ +++ SGA++++ + T ER V I GN Q E A D+I+
Sbjct: 156 INVPNNKVGVLIGKSGETIRNLQMNSGAKIQITKDAEADANAPTRSVELVGTLESIDKAERLI---------------------KNVIAEADAGGS-PALIARGFGSGQSGSEQFEMLVPDNKVGLIIGKGGETIKTLQTRSGARIQLIPQHPPEGVTLTERTVRITGNKKQIEAAKDMIK 314
BLAST of mRNA_H-elongata_contig16968.4324.1 vs. uniprot
Match: R0HAL4_9BRAS (Uncharacterized protein n=1 Tax=Capsella rubella TaxID=81985 RepID=R0HAL4_9BRAS) HSP 1 Score: 68.9 bits (167), Expect = 7.500e-9 Identity = 55/202 (27.23%), Postives = 93/202 (46.04%), Query Frame = 1
Query: 349 QRQVDHNESIRNINVVKIGLSIMCPSDSMGMLIGKGGSGLRELQNNSGVKVSLQETKSMPEGAKERGVGLSGALECVSNVERIIFDKLNARRVTALAPSPAEEEFENAYQEAKAAGLDPNGLEDANPDDPSRITVVRWIMSNTQCGWLIGKGGSGIQNIESTSGAQVRVASEKSTSKATGERIVYIKGNLDQREKALDIIRN 954
Q+ D + R I V PS +G+LIGKGG +R LQ NSG K+ + + R V + G + C+ N E++I + S AE +A G G+ P +I + + N + G +IG+GG I+N+++ SGA++++ + + ER V I G+ Q + A ++I++
Sbjct: 196 QKDGDTQSTTRRIEV---------PSSKVGVLIGKGGETIRNLQFNSGAKIQILRDSEADPNSSVRPVDIIGTVVCIENAEKLINAVI----------SEAEAGGSSALVARGHPGTHAIGI-------PEQIEIK---VPNDKVGQIIGRGGETIKNMQTRSGARIQLIPQHAEGDGVKERTVRISGDKRQIDIATNMIKD 368
BLAST of mRNA_H-elongata_contig16968.4324.1 vs. uniprot
Match: A2YQJ6_ORYSI (Uncharacterized protein n=11 Tax=Oryza TaxID=4527 RepID=A2YQJ6_ORYSI) HSP 1 Score: 68.2 bits (165), Expect = 1.260e-8 Identity = 54/181 (29.83%), Postives = 82/181 (45.30%), Query Frame = 1
Query: 412 IMCPSDSMGMLIGKGGSGLRELQNNSGVKVSLQETKSMPEGAKERGVGLSGALECVSNVERIIFDKLNARRVTALAPSPAEEEFENAYQEAKAAGLDPNGLEDANPDDPSRITVVRWIMSNTQCGWLIGKGGSGIQNIESTSGAQVRVASEKSTSKAT-GERIVYIKGNLDQREKALDIIR 951
I P++ +G+LIGK G +R LQ NSG K+ + + A R V L G LE + ER+I +N EA A G P + S ++ + + G +IGKGG I+ +++ SGA++++ + T ER V I GN Q E A D+I+
Sbjct: 156 INVPNNKVGVLIGKSGETIRNLQMNSGAKIQITKDAEADANAPTRSVELVGTLESIDKAERLI---------------------KNVIAEADAGGS-PALIARGFGSGQSGSEQFEMLVPDNKVGLIIGKGGETIKTLQTRSGARIQLIPQHPPEGVTLTERTVRITGNKKQIEAAKDMIK 314
BLAST of mRNA_H-elongata_contig16968.4324.1 vs. uniprot
Match: A0A1U8F2H4_CAPAN (KH domain-containing protein At4g18375 n=5 Tax=Capsicum TaxID=4071 RepID=A0A1U8F2H4_CAPAN) HSP 1 Score: 67.4 bits (163), Expect = 2.060e-8 Identity = 56/194 (28.87%), Postives = 93/194 (47.94%), Query Frame = 1
Query: 412 IMCPSDSMGMLIGKGGSGLRELQNNSGVKVSLQETKSMPEGAKERGVGLSGALECVSNVERIIFDK-LNARRVTALAPSPAEEEFENAYQEAKAAGLDPNGLEDANPDDPSRITVVRWIMSNTQCGWLIGKGGSGIQNIESTSGAQVRVASEKSTSKAT--GERIVYIKGNLDQREKAL----DIIRNNPKVTL 972
I+CP+D G LIGKGG+ +R+++ +G K+ + ++ S G ER + + C NVE ++ D+ L+ + A FE + + + G +D N V R + + Q G ++G+GG I+ I SGAQVRV S G+ ++ I G L KAL +++N ++ L
Sbjct: 56 ILCPADKTGGLIGKGGATIRQVREETGAKIRIDDSLS---GCDERVIVIIA--NC--NVEEVVNDEELSLSMSASQAQRALIRVFERILKVDEEGNAEGEGRKDIN-------VVCRLLAPSYQVGCVLGRGGKVIEKIRLESGAQVRVLSNDQIPPCASPGDELIQIAGTLSTVRKALLSVSSCLQDNSRIDL 235
BLAST of mRNA_H-elongata_contig16968.4324.1 vs. uniprot
Match: A0A8B6BZ79_MYTGA (Poly(RC)-binding protein 2/3/4 n=2 Tax=Mytilus TaxID=6548 RepID=A0A8B6BZ79_MYTGA) HSP 1 Score: 67.0 bits (162), Expect = 2.180e-8 Identity = 56/191 (29.32%), Postives = 91/191 (47.64%), Query Frame = 1
Query: 361 DHNESIRNINVVKIGLSI--MCPSDSMGMLIGKGGSGLRELQNNSGVKVSLQETKSMPEGAKERGVGLSGALECVSNVERIIFDKLNARRVTALAPSPAEEEFENAYQEAKAAGLDPNGLEDAN--PDDPSRITVVRWIMSNTQCGWLIGKGGSGIQNIESTSGAQVRVASEKSTSKATGERIVYIKGNLD 921
D N ++N N L++ + +G +IGK G +++ + +SG K+++ + S P ER V ++G +C++ I K EE+ +NA+ L+D P P +R ++ +QCG LIGKGGS I+ I T+GAQ++VASE + ER V + G D
Sbjct: 4 DINNMVQNDNSPPTMLTVRMIMQGKEVGSIIGKKGDNIKKFREDSGAKINISDG-SCP----ERIVTVTGTTDCINKAFTFICKKF-------------EEDLQNAFV-----------LQDLQNTPTVPKPPVTLRLVVPASQCGSLIGKGGSKIKEIRETTGAQIQVASEMLPNST--ERAVTVSGTAD 163
BLAST of mRNA_H-elongata_contig16968.4324.1 vs. uniprot
Match: A0A1Y1HSU6_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HSU6_KLENI) HSP 1 Score: 67.0 bits (162), Expect = 2.190e-8 Identity = 47/180 (26.11%), Postives = 83/180 (46.11%), Query Frame = 1
Query: 412 IMCPSDSMGMLIGKGGSGLRELQNNSGVKVSLQETKSMPEGAKERGVGLSGALECVSNVERIIFDKLNARRVTALAPSPAEEEFENAYQEAKAAGLDPNGLEDANPDDPSRITVVRWIMSNTQCGWLIGKGGSGIQNIESTSGAQVRVASEKSTSKATGERIVYIKGNLDQREKALDIIR 951
+ P+ +G++IGKGG +++LQ S ++ + + P GA+ R + + G E ++ E++I D +N G L PD V I+ N + G +IGKGG I+N+++ SGA+++V S+ + ER V + GN +A +I+
Sbjct: 147 VQIPNAKVGLVIGKGGETIKQLQYQSQARIQVTRDQDTPPGAQYREIEVVGTDEAIAKAEQLINDIVND------------------------VGGPGRALAAPGPD------AVTMIVPNDKVGLIIGKGGETIKNLQNRSGARIQVQSDATLEPGATERTVTLSGNGQATAEAKRLIQ 296 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16968.4324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16968.4324.1 >prot_H-elongata_contig16968.4324.1 ID=prot_H-elongata_contig16968.4324.1|Name=mRNA_H-elongata_contig16968.4324.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp MNSPAAKRQRQVDHNESIRNINVVKIGLSIMCPSDSMGMLIGKGGSGLREback to top mRNA from alignment at H-elongata_contig16968:5005..7509+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16968.4324.1 ID=mRNA_H-elongata_contig16968.4324.1|Name=mRNA_H-elongata_contig16968.4324.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2505bp|location=Sequence derived from alignment at H-elongata_contig16968:5005..7509+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16968:5005..7509+ >mRNA_H-elongata_contig16968.4324.1 ID=mRNA_H-elongata_contig16968.4324.1|Name=mRNA_H-elongata_contig16968.4324.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig16968:5005..7509+ (Himanthalia elongata Himel1 dioecious)back to top |