mRNA_H-elongata_contig169679.4323.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169679.4323.1
Unique NamemRNA_H-elongata_contig169679.4323.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig169679.4323.1 vs. uniprot
Match: D8LDA5_ECTSI (Putative Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA5_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 2.450e-51
Identity = 142/236 (60.17%), Postives = 157/236 (66.53%), Query Frame = 1 
Query:    1 TTATFSTSVNPNNAAAEATEDLSSLMVDTSXXXXXXXXXXXXXXXXXTVPGTVT-------LDPTTAAGSKVLTSSPLTPKXXXXXXXXXXXXXXXXXXXXXXXXXREQREELGLVEQLTNMVEVFDICDLLRKVSNSNSSRMDKHGGVVKPATGGSSAGGSQLSFHARNMSVDSSP-LPQSPQTARDGQTGLGSLASMELVRDSSKEWDTLMAGSTDVSDLSSTMVQSVAEFFSF 684
            TTA    S  P +++A     +S LMVDTS                   P TVT       +DP+TAAG+K LTSSPLTPK        XXXXXXXXXXXXXXXXX  QREELGLVEQLTNMVEVFDICDLLRKVS S SSR+DKHG ++KP+   S         H RNMSVD+   +PQSP       TGLGSLASMELVRDSSK+WDTLMAGS DVSDL +TMVQSVAEFFSF
Sbjct:  415 TTAGALPSERPASSSAGDDGPISPLMVDTSAEARAAASGASLRGVRPP-PVTVTGGGQRIPIDPSTAAGNKALTSSPLTPKSSLEAAAMXXXXXXXXXXXXXXXXXXXQREELGLVEQLTNMVEVFDICDLLRKVSTSGSSRLDKHGAIMKPS---SXXXXXXXPHHLRNMSVDTDQGMPQSPLGGGQSPTGLGSLASMELVRDSSKDWDTLMAGSADVSDLGNTMVQSVAEFFSF 646
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BLAST of mRNA_H-elongata_contig169679.4323.1 vs. uniprot
Match: A0A6H5KMN3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN3_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 4.130e-51
Identity = 124/177 (70.06%), Postives = 136/177 (76.84%), Query Frame = 1 
Query:  157 VTLDPTTAAGSKVLTSSPLTPKXXXXXXXXXXXXXXXXXXXXXXXXXREQREELGLVEQLTNMVEVFDICDLLRKVSNSNSSRMDKHGGVVKPATGGSSAGGSQLSFHARNMSVDSSP-LPQSPQTARDGQTGLGSLASMELVRDSSKEWDTLMAGSTDVSDLSSTMVQSVAEFFSF 684
            + +DP+TAAG+K LTSSPLTPK        XXXXXXXXXXXXXXXXX  QREELGLVEQLTNMVEVFDICDLLRKVS S SSR+DKHG +VKP+          +  H RNMSVD+   +PQ P       TGLGSLASMELVRDSSK+WDTLMAGS DVSDL +TMVQSVAEFFSF
Sbjct:  488 IPIDPSTAAGNKALTSSPLTPKSSLEAAAIXXXXXXXXXXXXXXXXXXXQREELGLVEQLTNMVEVFDICDLLRKVSTSGSSRLDKHGAIVKPS---GXXXXXXVPHHLRNMSVDTDQGMPQPPLEGEQSPTGLGSLASMELVRDSSKDWDTLMAGSADVSDLGNTMVQSVAEFFSF 661
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169679.4323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDA5_ECTSI2.450e-5160.17Putative Heat Shock transcription factor n=1 Tax=E... [more]
A0A6H5KMN3_9PHAE4.130e-5170.06HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169679contigH-elongata_contig169679:680..1366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size687
Cds size687
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929989.9863155-CDS-H-elongata_contig169679:679..13661622929989.9863155-CDS-H-elongata_contig169679:679..1366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169679 680..1366 -
1691679236.8325868-CDS-H-elongata_contig169679:679..13661691679236.8325868-CDS-H-elongata_contig169679:679..1366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169679 680..1366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169679.4323.1prot_H-elongata_contig169679.4323.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169679 680..1366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169679.4323.1

>prot_H-elongata_contig169679.4323.1 ID=prot_H-elongata_contig169679.4323.1|Name=mRNA_H-elongata_contig169679.4323.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
TTATFSTSVNPNNAAAEATEDLSSLMVDTSAAARAAAAGIAARPPPVTVP
GTVTLDPTTAAGSKVLTSSPLTPKSCATAAASTAAAAAAAAAAMPPPAKR
EQREELGLVEQLTNMVEVFDICDLLRKVSNSNSSRMDKHGGVVKPATGGS
SAGGSQLSFHARNMSVDSSPLPQSPQTARDGQTGLGSLASMELVRDSSKE
WDTLMAGSTDVSDLSSTMVQSVAEFFSF*
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mRNA from alignment at H-elongata_contig169679:680..1366-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169679.4323.1 ID=mRNA_H-elongata_contig169679.4323.1|Name=mRNA_H-elongata_contig169679.4323.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=687bp|location=Sequence derived from alignment at H-elongata_contig169679:680..1366- (Himanthalia elongata Himel1 dioecious)
ACCACGGCTACCTTCTCTACCTCCGTGAACCCGAACAACGCTGCCGCCGA
GGCGACCGAGGATTTATCGAGCCTCATGGTGGACACCTCTGCTGCCGCCC
GCGCAGCCGCCGCGGGCATCGCAGCGCGGCCACCCCCGGTAACTGTCCCT
GGGACGGTCACCCTCGATCCCACCACTGCCGCCGGGAGTAAGGTGTTGAC
GTCATCCCCGTTAACACCCAAGTCGTGTGCCACCGCGGCAGCCTCGACGG
CGGCCGCCGCCGCTGCGGCCGCTGCGGCCATGCCGCCCCCCGCCAAGCGC
GAGCAGCGGGAGGAGCTGGGCCTCGTGGAGCAGCTGACCAATATGGTAGA
GGTGTTCGATATCTGCGATTTGCTTCGCAAGGTCTCGAACTCAAACTCCT
CCCGAATGGACAAGCACGGAGGCGTTGTCAAGCCCGCGACAGGTGGGAGC
AGCGCTGGAGGCAGCCAGCTGTCATTCCACGCGCGTAACATGAGCGTGGA
CTCGAGCCCGCTCCCCCAGAGCCCTCAGACGGCCAGGGACGGCCAGACGG
GGCTTGGTAGCCTTGCCTCGATGGAGCTTGTAAGAGACTCCAGCAAAGAA
TGGGATACGCTGATGGCGGGCTCTACCGATGTGAGTGACCTTAGCAGCAC
CATGGTGCAGAGCGTCGCTGAGTTCTTCTCGTTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig169679:680..1366-

>mRNA_H-elongata_contig169679.4323.1 ID=mRNA_H-elongata_contig169679.4323.1|Name=mRNA_H-elongata_contig169679.4323.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig169679:680..1366- (Himanthalia elongata Himel1 dioecious)
ACCACGGCTACCTTCTCTACCTCCGTGAACCCGAACAACGCTGCCGCCGA
GGCGACCGAGGATTTATCGAGCCTCATGGTGGACACCTCTGCTGCCGCCC
GCGCAGCCGCCGCGGGCATCGCAGCGCGGCCACCCCCGGTAACTGTCCCT
GGGACGGTCACCCTCGATCCCACCACTGCCGCCGGGAGTAAGGTGTTGAC
GTCATCCCCGTTAACACCCAAGTCGTGTGCCACCGCGGCAGCCTCGACGG
CGGCCGCCGCCGCTGCGGCCGCTGCGGCCATGCCGCCCCCCGCCAAGCGC
GAGCAGCGGGAGGAGCTGGGCCTCGTGGAGCAGCTGACCAATATGGTAGA
GGTGTTCGATATCTGCGATTTGCTTCGCAAGGTCTCGAACTCAAACTCCT
CCCGAATGGACAAGCACGGAGGCGTTGTCAAGCCCGCGACAGGTGGGAGC
AGCGCTGGAGGCAGCCAGCTGTCATTCCACGCGCGTAACATGAGCGTGGA
CTCGAGCCCGCTCCCCCAGAGCCCTCAGACGGCCAGGGACGGCCAGACGG
GGCTTGGTAGCCTTGCCTCGATGGAGCTTGTAAGAGACTCCAGCAAAGAA
TGGGATACGCTGATGGCGGGCTCTACCGATGTGAGTGACCTTAGCAGCAC
CATGGTGCAGAGCGTCGCTGAGTTCTTCTCGTTCTAAACCACGGCTACCT
TCTCTACCTCCGTGAACCCGAACAACGCTGCCGCCGAGGCGACCGAGGAT
TTATCGAGCCTCATGGTGGACACCTCTGCTGCCGCCCGCGCAGCCGCCGC
GGGCATCGCAGCGCGGCCACCCCCGGTAACTGTCCCTGGGACGGTCACCC
TCGATCCCACCACTGCCGCCGGGAGTAAGGTGTTGACGTCATCCCCGTTA
ACACCCAAGTCGTGTGCCACCGCGGCAGCCTCGACGGCGGCCGCCGCCGC
TGCGGCCGCTGCGGCCATGCCGCCCCCCGCCAAGCGCGAGCAGCGGGAGG
AGCTGGGCCTCGTGGAGCAGCTGACCAATATGGTAGAGGTGTTCGATATC
TGCGATTTGCTTCGCAAGGTCTCGAACTCAAACTCCTCCCGAATGGACAA
GCACGGAGGCGTTGTCAAGCCCGCGACAGGTGGGAGCAGCGCTGGAGGCA
GCCAGCTGTCATTCCACGCGCGTAACATGAGCGTGGACTCGAGCCCGCTC
CCCCAGAGCCCTCAGACGGCCAGGGACGGCCAGACGGGGCTTGGTAGCCT
TGCCTCGATGGAGCTTGTAAGAGACTCCAGCAAAGAATGGGATACGCTGA
TGGCGGGCTCTACCGATGTGAGTGACCTTAGCAGCACCATGGTGCAGAGC
GTCGCTGAGTTCTTCTCGTTCTAA
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