mRNA_H-elongata_contig16961.4320.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16961.4320.1
Unique NamemRNA_H-elongata_contig16961.4320.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16961.4320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16961contigH-elongata_contig16961:1354..2776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-28_003440.1
Exons1
Model size1424
Cds size1422
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929989.860855-CDS-H-elongata_contig16961:1353..27751622929989.860855-CDS-H-elongata_contig16961:1353..2775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16961 1354..2775 +
1691679236.7959545-CDS-H-elongata_contig16961:1353..27751691679236.7959545-CDS-H-elongata_contig16961:1353..2775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16961 1354..2775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16961.4320.1prot_H-elongata_contig16961.4320.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16961 1354..2775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16961.4320.1

>prot_H-elongata_contig16961.4320.1 ID=prot_H-elongata_contig16961.4320.1|Name=mRNA_H-elongata_contig16961.4320.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=474bp
TALSGAIKKAVELSQSSTPSMYFPGRHALYSAKVPRVETSSAGMTTDGAG
GRGSKSGGENQHVGAQGETGSTSPWEELRRRKYVAGNGDSRVSAEGIRSL
AAATPGNSAAGGRSSDEGSRAPKRKATVDLLKDFDYRGPASHSGVSLAKE
KRPAISDAGAGQEAAAVARPEKGRTVVRERTNVVTALNTKRSRIGSPALA
PRPEDVEESSTRSSSVNHNDGDEDMGTAAENRKIAASPVEAATAEMMVKK
ELVEAVGKVSDGALVPALAGSVDSATSTRVTTERLKRTPARPQKVSIFLT
PSSTAASAQSDAPTVNTTASPAPSHSTDAKARLARILSWKQIAVSAGPPP
TVASTPGDSGCEGCGSAKVTPEVMVSIEPDADASRSGGGNGSGDRSVLKR
KMSAQINGWRSRFNVDEVELREILSLSLSGSNTKSDSVKPPIKGGGTAGS
DGNRGSGLDEIDEDWGENLVYVGG
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mRNA from alignment at H-elongata_contig16961:1354..2776+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16961.4320.1 ID=mRNA_H-elongata_contig16961.4320.1|Name=mRNA_H-elongata_contig16961.4320.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1423bp|location=Sequence derived from alignment at H-elongata_contig16961:1354..2776+ (Himanthalia elongata Himel1 dioecious)
ACGGCCTTGTCCGGGGCCATCAAGAAAGCCGTCGAACTATCCCAGAGCTC
AACCCCTTCGATGTACTTTCCCGGGCGACACGCTCTGTATTCGGCAAAGG
TTCCACGGGTAGAGACTTCGTCTGCAGGCATGACAACGGATGGCGCGGGA
GGACGTGGAAGCAAAAGCGGAGGAGAAAATCAACATGTAGGCGCCCAAGG
AGAAACGGGCTCGACGTCTCCCTGGGAAGAGCTTCGACGGCGGAAGTATG
TTGCGGGAAATGGCGACTCCAGGGTATCCGCGGAAGGTATACGGTCTCTA
GCGGCGGCCACACCAGGGAATTCGGCAGCAGGAGGTCGGTCGAGTGACGA
GGGCTCGAGGGCGCCAAAGAGGAAAGCCACAGTAGACTTGTTAAAAGACT
TCGACTACCGCGGCCCTGCATCTCATAGCGGGGTATCTTTGGCAAAAGAA
AAGAGACCCGCTATCTCTGACGCCGGAGCGGGGCAGGAAGCAGCAGCGGT
CGCTCGTCCCGAGAAGGGAAGGACGGTGGTGAGAGAGCGGACAAATGTGG
TAACTGCATTAAACACCAAGAGGAGCAGGATTGGTTCGCCCGCGTTAGCC
CCTAGACCGGAGGATGTTGAGGAATCGAGTACGAGGAGCTCATCGGTGAA
CCACAACGACGGTGATGAGGACATGGGGACGGCAGCAGAGAATCGAAAAA
TTGCTGCGTCGCCCGTTGAGGCTGCCACTGCGGAAATGATGGTCAAGAAA
GAACTGGTCGAGGCGGTCGGAAAGGTAAGTGACGGGGCTTTGGTGCCGGC
TCTCGCGGGATCCGTTGACTCGGCGACGTCTACCCGCGTAACAACGGAGC
GCCTGAAGAGAACGCCGGCTAGACCCCAGAAGGTATCAATCTTTCTGACT
CCCTCATCAACCGCGGCCAGCGCACAGTCGGACGCTCCGACGGTAAACAC
CACTGCCAGCCCGGCCCCCTCTCATTCCACCGACGCCAAAGCTAGACTAG
CTAGAATTCTTTCTTGGAAACAGATCGCCGTAAGCGCCGGACCCCCGCCG
ACAGTGGCTTCGACGCCTGGAGACAGCGGCTGTGAAGGTTGTGGTAGCGC
GAAGGTGACTCCGGAGGTGATGGTTTCCATAGAGCCCGACGCCGATGCGT
CCCGATCCGGTGGCGGCAATGGAAGCGGAGACAGGTCCGTGCTGAAGCGG
AAAATGAGCGCGCAGATCAATGGGTGGCGATCGCGCTTCAATGTGGACGA
GGTCGAGCTCCGGGAAATTTTGTCGTTGTCTTTGAGTGGTTCCAATACCA
AGTCCGATAGCGTAAAACCGCCCATAAAGGGCGGTGGAACAGCGGGGAGC
GATGGTAACAGGGGGAGCGGGTTGGACGAGATAGACGAAGACTGGGGCGA
GAATCTGGTGTACGTGGGCGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig16961:1354..2776+

>mRNA_H-elongata_contig16961.4320.1 ID=mRNA_H-elongata_contig16961.4320.1|Name=mRNA_H-elongata_contig16961.4320.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2844bp|location=Sequence derived from alignment at H-elongata_contig16961:1354..2776+ (Himanthalia elongata Himel1 dioecious)
ACGGCCTTGTCCGGGGCCATCAAGAAAGCCGTCGAACTATCCCAGAGCTC
AACCCCTTCGATGTACTTTCCCGGGCGACACGCTCTGTATTCGGCAAAGG
TTCCACGGGTAGAGACTTCGTCTGCAGGCATGACAACGGATGGCGCGGGA
GGACGTGGAAGCAAAAGCGGAGGAGAAAATCAACATGTAGGCGCCCAAGG
AGAAACGGGCTCGACGTCTCCCTGGGAAGAGCTTCGACGGCGGAAGTATG
TTGCGGGAAATGGCGACTCCAGGGTATCCGCGGAAGGTATACGGTCTCTA
GCGGCGGCCACACCAGGGAATTCGGCAGCAGGAGGTCGGTCGAGTGACGA
GGGCTCGAGGGCGCCAAAGAGGAAAGCCACAGTAGACTTGTTAAAAGACT
TCGACTACCGCGGCCCTGCATCTCATAGCGGGGTATCTTTGGCAAAAGAA
AAGAGACCCGCTATCTCTGACGCCGGAGCGGGGCAGGAAGCAGCAGCGGT
CGCTCGTCCCGAGAAGGGAAGGACGGTGGTGAGAGAGCGGACAAATGTGG
TAACTGCATTAAACACCAAGAGGAGCAGGATTGGTTCGCCCGCGTTAGCC
CCTAGACCGGAGGATGTTGAGGAATCGAGTACGAGGAGCTCATCGGTGAA
CCACAACGACGGTGATGAGGACATGGGGACGGCAGCAGAGAATCGAAAAA
TTGCTGCGTCGCCCGTTGAGGCTGCCACTGCGGAAATGATGGTCAAGAAA
GAACTGGTCGAGGCGGTCGGAAAGGTAAGTGACGGGGCTTTGGTGCCGGC
TCTCGCGGGATCCGTTGACTCGGCGACGTCTACCCGCGTAACAACGGAGC
GCCTGAAGAGAACGCCGGCTAGACCCCAGAAGGTATCAATCTTTCTGACT
CCCTCATCAACCGCGGCCAGCGCACAGTCGGACGCTCCGACGGTAAACAC
CACTGCCAGCCCGGCCCCCTCTCATTCCACCGACGCCAAAGCTAGACTAG
CTAGAATTCTTTCTTGGAAACAGATCGCCGTAAGCGCCGGACCCCCGCCG
ACAGTGGCTTCGACGCCTGGAGACAGCGGCTGTGAAGGTTGTGGTAGCGC
GAAGGTGACTCCGGAGGTGATGGTTTCCATAGAGCCCGACGCCGATGCGT
CCCGATCCGGTGGCGGCAATGGAAGCGGAGACAGGTCCGTGCTGAAGCGG
AAAATGAGCGCGCAGATCAATGGGTGGCGATCGCGCTTCAATGTGGACGA
GGTCGAGCTCCGGGAAATTTTGTCGTTGTCTTTGAGTGGTTCCAATACCA
AGTCCGATAGCGTAAAACCGCCCATAAAGGGCGGTGGAACAGCGGGGAGC
GATGGTAACAGGGGGAGCGGGTTGGACGAGATAGACGAAGACTGGGGCGA
GAATCTGGTGTACGTGGGCGGGACGGCCTTGTCCGGGGCCATCAAGAAAG
CCGTCGAACTATCCCAGAGCTCAACCCCTTCGATGTACTTTCCCGGGCGA
CACGCTCTGTATTCGGCAAAGGTTCCACGGGTAGAGACTTCGTCTGCAGG
CATGACAACGGATGGCGCGGGAGGACGTGGAAGCAAAAGCGGAGGAGAAA
ATCAACATGTAGGCGCCCAAGGAGAAACGGGCTCGACGTCTCCCTGGGAA
GAGCTTCGACGGCGGAAGTATGTTGCGGGAAATGGCGACTCCAGGGTATC
CGCGGAAGGTATACGGTCTCTAGCGGCGGCCACACCAGGGAATTCGGCAG
CAGGAGGTCGGTCGAGTGACGAGGGCTCGAGGGCGCCAAAGAGGAAAGCC
ACAGTAGACTTGTTAAAAGACTTCGACTACCGCGGCCCTGCATCTCATAG
CGGGGTATCTTTGGCAAAAGAAAAGAGACCCGCTATCTCTGACGCCGGAG
CGGGGCAGGAAGCAGCAGCGGTCGCTCGTCCCGAGAAGGGAAGGACGGTG
GTGAGAGAGCGGACAAATGTGGTAACTGCATTAAACACCAAGAGGAGCAG
GATTGGTTCGCCCGCGTTAGCCCCTAGACCGGAGGATGTTGAGGAATCGA
GTACGAGGAGCTCATCGGTGAACCACAACGACGGTGATGAGGACATGGGG
ACGGCAGCAGAGAATCGAAAAATTGCTGCGTCGCCCGTTGAGGCTGCCAC
TGCGGAAATGATGGTCAAGAAAGAACTGGTCGAGGCGGTCGGAAAGGTAA
GTGACGGGGCTTTGGTGCCGGCTCTCGCGGGATCCGTTGACTCGGCGACG
TCTACCCGCGTAACAACGGAGCGCCTGAAGAGAACGCCGGCTAGACCCCA
GAAGGTATCAATCTTTCTGACTCCCTCATCAACCGCGGCCAGCGCACAGT
CGGACGCTCCGACGGTAAACACCACTGCCAGCCCGGCCCCCTCTCATTCC
ACCGACGCCAAAGCTAGACTAGCTAGAATTCTTTCTTGGAAACAGATCGC
CGTAAGCGCCGGACCCCCGCCGACAGTGGCTTCGACGCCTGGAGACAGCG
GCTGTGAAGGTTGTGGTAGCGCGAAGGTGACTCCGGAGGTGATGGTTTCC
ATAGAGCCCGACGCCGATGCGTCCCGATCCGGTGGCGGCAATGGAAGCGG
AGACAGGTCCGTGCTGAAGCGGAAAATGAGCGCGCAGATCAATGGGTGGC
GATCGCGCTTCAATGTGGACGAGGTCGAGCTCCGGGAAATTTTGTCGTTG
TCTTTGAGTGGTTCCAATACCAAGTCCGATAGCGTAAAACCGCCCATAAA
GGGCGGTGGAACAGCGGGGAGCGATGGTAACAGGGGGAGCGGGTTGGACG
AGATAGACGAAGACTGGGGCGAGAATCTGGTGTACGTGGGCGGG
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