mRNA_H-elongata_contig169601.4319.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169601.4319.1
Unique NamemRNA_H-elongata_contig169601.4319.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig169601.4319.1 vs. uniprot
Match: A0A6H5JNJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 8.590e-30
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 HSFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSKDYFNRMHLYYG 186
            + F VTVKYVRREIR+LTDRDRE FFNAVSVLQRVPSAVG+ VYG KYYSKDYFNRMHLYYG
Sbjct:   70 YEFAVTVKYVRREIRALTDRDRETFFNAVSVLQRVPSAVGRAVYGDKYYSKDYFNRMHLYYG 131
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BLAST of mRNA_H-elongata_contig169601.4319.1 vs. uniprot
Match: A0A6H5K5A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.680e-28
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 HSFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSKDYFNRMHLYYG 186
            + F VTVKYVRREIR+LTDRDRE FFNAVSVLQRVPSAVG+ VYG KYYSKDYFNRMHLYYG
Sbjct:   81 YEFAVTVKYVRREIRALTDRDRETFFNAVSVLQRVPSAVGRAVYGDKYYSKDYFNRMHLYYG 142
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BLAST of mRNA_H-elongata_contig169601.4319.1 vs. uniprot
Match: D7G1Z7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z7_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 5.500e-28
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 HSFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSKDYFNRMHLYYG 186
            H   VTVKYVRREIR LTDRDRE FFNAVSVLQRVPSAVG+++YG KYYSK YFNR+H++YG
Sbjct:   45 HELEVTVKYVRREIRDLTDRDRETFFNAVSVLQRVPSAVGREIYGDKYYSKGYFNRLHIFYG 106
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BLAST of mRNA_H-elongata_contig169601.4319.1 vs. uniprot
Match: D8LAY9_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY9_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.150e-27
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 HSFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSKDYFNRMHLYYGTA 192
            + F VTVKYVRREIRSLTDRDRE FFNAV+VLQRVPSAVG+ VYG KYYSKDYFNRMHLYYG A
Sbjct:  198 YEFAVTVKYVRREIRSLTDRDRETFFNAVAVLQRVPSAVGRAVYGDKYYSKDYFNRMHLYYGGA 261
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BLAST of mRNA_H-elongata_contig169601.4319.1 vs. uniprot
Match: A0A6H5JTC5_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC5_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.230e-27
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 HSFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSKDYFNRMHLYYGTA 192
            + F VTVKYVRREIR+LTDRDRE FFNAVSVLQRVPSAVG+ VYG KYYSKDYFNRMHLYYG A
Sbjct:  269 YEFAVTVKYVRREIRALTDRDRETFFNAVSVLQRVPSAVGRAVYGDKYYSKDYFNRMHLYYGGA 332
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BLAST of mRNA_H-elongata_contig169601.4319.1 vs. uniprot
Match: A0A6H5K0F0_9PHAE (Tyrosinase_Cu-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.760e-27
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 HSFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSKDYFNRMHLYYGTA 192
            + F VTVKYVRREIR+LTDRDRE FFNAVSVLQRVPSAVG+ +YG KYYSKD+FNRMHLYYG A
Sbjct:   68 YEFVVTVKYVRREIRALTDRDRETFFNAVSVLQRVPSAVGRALYGDKYYSKDFFNRMHLYYGGA 131
[Close]
BLAST of mRNA_H-elongata_contig169601.4319.1 vs. uniprot
Match: D7FSN5_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN5_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 5.270e-27
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 HSFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSKDYFNRMHLYYG 186
            H F VTVKYVRREIR LTDRDRE FFNAVSVLQRVPSAVG+++YG KYYSKDYFNR+HL+YG
Sbjct:   95 HKFEVTVKYVRREIRDLTDRDRETFFNAVSVLQRVPSAVGREIYGDKYYSKDYFNRLHLFYG 156
[Close]
BLAST of mRNA_H-elongata_contig169601.4319.1 vs. uniprot
Match: D7G1K2_ECTSI (Hypothetical tyrosinase-like protein F21C3.2 in chromosome I, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K2_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 3.210e-26
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    4 SFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSKDYFNRMHLYYG 186
            +F V VKY+RREIR+LTDRDRE FFNAVS++QRVPSAVGQQVYG KYYSKD+FNR+HLYYG
Sbjct:   92 NFVVVVKYIRREIRTLTDRDRETFFNAVSIMQRVPSAVGQQVYGSKYYSKDFFNRIHLYYG 152
[Close]
BLAST of mRNA_H-elongata_contig169601.4319.1 vs. uniprot
Match: A0A6H5KKI9_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI9_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.780e-26
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    7 FTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSKDYFNRMHLYYG 186
            F V VKYVRREIR+LTDRDRE FFNAVS++QRVPSAVGQQVYG KYYSKD+FNR+HLYYG
Sbjct:  286 FVVVVKYVRREIRTLTDRDRETFFNAVSIMQRVPSAVGQQVYGSKYYSKDFFNRIHLYYG 345
[Close]
BLAST of mRNA_H-elongata_contig169601.4319.1 vs. uniprot
Match: D7FSM9_ECTSI (Tyrosinase-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSM9_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.160e-24
Identity = 50/62 (80.65%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 HSFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSKDYFNRMHLYYG 186
            H F VTVKYVRREIR LTDRDRE FFNAVSVLQRVPS VG+++YG KYYS DYF RMHLY G
Sbjct:  182 HEFEVTVKYVRREIRDLTDRDREAFFNAVSVLQRVPSVVGREIYGDKYYSMDYFTRMHLYGG 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169601.4319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNJ2_9PHAE8.590e-3087.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A2_9PHAE1.680e-2887.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1Z7_ECTSI5.500e-2879.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LAY9_ECTSI1.150e-2785.94Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A6H5JTC5_9PHAE1.230e-2785.94TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5K0F0_9PHAE1.760e-2782.81Tyrosinase_Cu-bd domain-containing protein n=1 Tax... [more]
D7FSN5_ECTSI5.270e-2783.87Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
D7G1K2_ECTSI3.210e-2681.97Hypothetical tyrosinase-like protein F21C3.2 in ch... [more]
A0A6H5KKI9_9PHAE3.780e-2685.00TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FSM9_ECTSI2.160e-2480.65Tyrosinase-like protein 2 n=1 Tax=Ectocarpus silic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169601contigH-elongata_contig169601:17..214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue2.8e-20
Seed eggNOG ortholog2880.D7FSM9
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs2CZRH@1,2SBDH@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929989.667511-CDS-H-elongata_contig169601:16..2141622929989.667511-CDS-H-elongata_contig169601:16..214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169601 17..214 -
1691679236.711673-CDS-H-elongata_contig169601:16..2141691679236.711673-CDS-H-elongata_contig169601:16..214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169601 17..214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169601.4319.1prot_H-elongata_contig169601.4319.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169601 17..214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169601.4319.1

>prot_H-elongata_contig169601.4319.1 ID=prot_H-elongata_contig169601.4319.1|Name=mRNA_H-elongata_contig169601.4319.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
HSFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYS
KDYFNRMHLYYGTAY*
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mRNA from alignment at H-elongata_contig169601:17..214-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169601.4319.1 ID=mRNA_H-elongata_contig169601.4319.1|Name=mRNA_H-elongata_contig169601.4319.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig169601:17..214- (Himanthalia elongata Himel1 dioecious)
CACAGCTTCACCGTGACGGTTAAATACGTTCGGCGAGAGATTCGGTCGTT
GACGGACCGCGATCGTGAGAAGTTCTTCAACGCCGTGTCGGTGCTGCAAC
GCGTGCCCAGTGCCGTGGGGCAGCAGGTCTACGGGAAGAAGTACTACAGC
AAGGACTACTTCAACCGAATGCATCTCTACTACGGTACGGCCTATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig169601:17..214-

>mRNA_H-elongata_contig169601.4319.1 ID=mRNA_H-elongata_contig169601.4319.1|Name=mRNA_H-elongata_contig169601.4319.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig169601:17..214- (Himanthalia elongata Himel1 dioecious)
CACAGCTTCACCGTGACGGTTAAATACGTTCGGCGAGAGATTCGGTCGTT
GACGGACCGCGATCGTGAGAAGTTCTTCAACGCCGTGTCGGTGCTGCAAC
GCGTGCCCAGTGCCGTGGGGCAGCAGGTCTACGGGAAGAAGTACTACAGC
AAGGACTACTTCAACCGAATGCATCTCTACTACGGTACGGCCTATTAACA
CAGCTTCACCGTGACGGTTAAATACGTTCGGCGAGAGATTCGGTCGTTGA
CGGACCGCGATCGTGAGAAGTTCTTCAACGCCGTGTCGGTGCTGCAACGC
GTGCCCAGTGCCGTGGGGCAGCAGGTCTACGGGAAGAAGTACTACAGCAA
GGACTACTTCAACCGAATGCATCTCTACTACGGTACGGCCTATTAA
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