mRNA_H-elongata_contig1696.4317.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1696.4317.1
Unique NamemRNA_H-elongata_contig1696.4317.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1696.4317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1696contigH-elongata_contig1696:10997..11625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size630
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929989.3548577-CDS-H-elongata_contig1696:10996..113921622929989.3548577-CDS-H-elongata_contig1696:10996..11392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1696 10997..11392 +
1691679236.574634-CDS-H-elongata_contig1696:10996..113921691679236.574634-CDS-H-elongata_contig1696:10996..11392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1696 10997..11392 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929989.370876-UTR-H-elongata_contig1696:11392..116251622929989.370876-UTR-H-elongata_contig1696:11392..11625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1696 11393..11625 +
1691679236.5838144-UTR-H-elongata_contig1696:11392..116251691679236.5838144-UTR-H-elongata_contig1696:11392..11625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1696 11393..11625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1696.4317.1prot_H-elongata_contig1696.4317.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1696 10997..11392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1696.4317.1

>prot_H-elongata_contig1696.4317.1 ID=prot_H-elongata_contig1696.4317.1|Name=mRNA_H-elongata_contig1696.4317.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
LSTPPLSPRLLHQNNTPLHSQWHDDYWDRSPPQSHRCIWIALETERPFAG
GRQARQALLMVAKTNAKNPSLLHRFAMVRNLARLFHPSDCYTLFDCCLTY
AERARIASRSFVVHPRYAARFGERWLVALLL*
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mRNA from alignment at H-elongata_contig1696:10997..11625+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1696.4317.1 ID=mRNA_H-elongata_contig1696.4317.1|Name=mRNA_H-elongata_contig1696.4317.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=629bp|location=Sequence derived from alignment at H-elongata_contig1696:10997..11625+ (Himanthalia elongata Himel1 dioecious)
CTTTCAACGCCACCGCTTTCTCCGCGACTTCTGCATCAGAACAACACCCC
GCTTCATTCCCAGTGGCATGACGATTACTGGGATCGATCGCCACCGCAGT
CTCACCGATGCATCTGGATTGCCCTTGAGACGGAAAGACCCTTCGCGGGT
GGACGCCAGGCGCGACAAGCCCTTCTGATGGTGGCGAAAACGAATGCAAA
GAATCCTTCTCTCCTTCATCGCTTCGCGATGGTTCGTAATTTGGCGCGGT
TGTTCCATCCAAGCGATTGCTACACCCTTTTCGATTGCTGCTTGACGTAT
GCTGAGCGCGCTCGTATTGCTTCTCGTTCGTTTGTTGTCCATCCCCGTTA
CGCGGCGAGATTCGGGGAGCGGTGGCTGGTCGCTCTTCTTCTCTAGCTTT
TTCCAACTTCCCTGGCGCTTTCGTGCAAGAGGCCACTTCCGGCGCCCGCT
CGAGGCCACGGTGAGCATCATCATCTCGCTCACTTTCATTGACTTTCCCA
TCTGCTCCTTTTATCTTCCCTCCTCTTCGTGGACTCCGACGCTGAGTGGG
ATCCTCCCCCACTTCTATCTGTCCCGTCTGTCGAACACATCTTGCTTCGC
CCCCAGGCGAAGTTTCCCCACAAGCCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig1696:10997..11625+

>mRNA_H-elongata_contig1696.4317.1 ID=mRNA_H-elongata_contig1696.4317.1|Name=mRNA_H-elongata_contig1696.4317.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig1696:10997..11625+ (Himanthalia elongata Himel1 dioecious)
CTTTCAACGCCACCGCTTTCTCCGCGACTTCTGCATCAGAACAACACCCC
GCTTCATTCCCAGTGGCATGACGATTACTGGGATCGATCGCCACCGCAGT
CTCACCGATGCATCTGGATTGCCCTTGAGACGGAAAGACCCTTCGCGGGT
GGACGCCAGGCGCGACAAGCCCTTCTGATGGTGGCGAAAACGAATGCAAA
GAATCCTTCTCTCCTTCATCGCTTCGCGATGGTTCGTAATTTGGCGCGGT
TGTTCCATCCAAGCGATTGCTACACCCTTTTCGATTGCTGCTTGACGTAT
GCTGAGCGCGCTCGTATTGCTTCTCGTTCGTTTGTTGTCCATCCCCGTTA
CGCGGCGAGATTCGGGGAGCGGTGGCTGGTCGCTCTTCTTCTCTAGCTTT
CAACGCCACCGCTTTCTCCGCGACTTCTGCATCAGAACAACACCCCGCTT
CATTCCCAGTGGCATGACGATTACTGGGATCGATCGCCACCGCAGTCTCA
CCGATGCATCTGGATTGCCCTTGAGACGGAAAGACCCTTCGCGGGTGGAC
GCCAGGCGCGACAAGCCCTTCTGATGGTGGCGAAAACGAATGCAAAGAAT
CCTTCTCTCCTTCATCGCTTCGCGATGGTTCGTAATTTGGCGCGGTTGTT
CCATCCAAGCGATTGCTACACCCTTTTCGATTGCTGCTTGACGTATGCTG
AGCGCGCTCGTATTGCTTCTCGTTCGTTTGTTGTCCATCCCCGTTACGCG
GCGAGATTCGGGGAGCGGTGGCTGGTCGCTCTTCTTCTCTAG
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