mRNA_H-elongata_contig1696.4315.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A6H5JQJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ8_9PHAE) HSP 1 Score: 305 bits (781), Expect = 1.540e-91 Identity = 240/583 (41.17%), Postives = 277/583 (47.51%), Query Frame = 1
Query: 307 SSTVKLERDAKKXXXXXXXXXXXXXXXESHSAGSSNAGTLAHEFAQRHPE-ALQVKVCPIHEGDKSVPNTISSAAEISENVIAPSQPYPSFPLAVPRQS------ADAASAAAVAAADTDVALPV-----EFGTVGPREWTTQQTSESGELINSESEPVHVQL--ESYAITELLPRQELRSGKHPGVKDEEANGHVRSRAATEGTKEGETPWERGWQASELFMPP----------SECKRPD-------GAGVGDLASGL-----------------------RNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIFVARGYPVVGRVVAIATPTPPRLFSREELRLFDGR--------------RVPVGLE-----GG------------------FLLP-------------TGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLED--KGYPVVGRIALCS 1737
S+ LE+ A++ SH GSS A TLAHE +QRHP AL CP+ + S ++ V A + P P A A + A AAA T +A V G E +++ SGE E HV L ES + T P + + G + G E T PWERGWQ E F PP S R GAG+ +S RNFT+ QLN FDGG RGG RAGK RPIYIAL+G VYD SAGRHLYGP GEYSE AGHD+SRRVA G + LDDLSLE L RFE+MTL GWED F ARGYP +GRVVA P PPRLFSR ELR FDGR R G E GG L P + YA IY+GV DKVFDVSFGG+E Y EGG Y+CLAGRDASRVLA+MSM+ ED+EG LDYS LT +E KNLADW +L + KGYPVVG I L S
Sbjct: 67 STAAALEKRAEELEAAGDLDGAMEALLASHDQGSSRAVTLAHELSQRHPVGALGGNRCPL--------SIRSPRRKVGGGVEAGASPDPEASSAXXXXXXXXXXXAVSVVAPVCAAALTSLASEVLADDNNDGVTSVPEEHCKRSLPSGE------ERRHVTLSGESASATAAGPASQSAATTATGALEP---GKRIDHGGGEPTTTTLLPWERGWQGREGFKPPPSSSALADTGSSASRDAAGTAAAFGAGLSPSSSSFAETGVQSDDALDVGDAEATKLARRNFTVRQLNAFDGGCSAPRMRGGEARAGKQRPIYIALKGEVYDASAGRHLYGPGGEYSEFAGHDISRRVAHGASHSDRSSNTLLDDLSLENLGRFEQMTLRGWEDTFRARGYPSLGRVVA---PPPPRLFSRAELRAFDGRSAHVAGPEYEETERRAGAGREEREVGGGEPGEQVAALGRHEEQPAESLPPEQEAKATANAVCFSNYAARPIYMGVKDKVFDVSFGGSEFYLEGGPYECLAGRDASRVLAKMSMASEDIEGVLDYSCLTDREEKNLADWVAKLGEGGKGYPVVGWIDLGS 629
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: D7FRN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN9_ECTSI) HSP 1 Score: 276 bits (706), Expect = 2.450e-80 Identity = 161/290 (55.52%), Postives = 178/290 (61.38%), Query Frame = 1
Query: 994 RNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIFVARGYPVVGRVVAIATPTPPRLFSREELRLFDGRRVPV------------GLEGG-------------------------FLLP-------------TGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLED--KGY 1707
RNFT+ QLN FDGG RGG RA K RPIYIAL+G VYD SAGRHLYGP GEYSE AGHD+SRRVA G + LDDLSLEGL RFE+MTL GWED F ARGYP +GRVVA P PPRLFSR ELR FDGR V G GG L P + YA IY+GV DKVFDVSFGG+E Y EGG Y+CLAGRDASRVLA+MSM+ ED+EG LDYS LT +E KNLADW ++L + KGY
Sbjct: 34 RNFTVRQLNAFDGGCSAPRMRGGEARAVKQRPIYIALKGEVYDASAGRHLYGPGGEYSEFAGHDISRRVAHGASRSDRSSSTLLDDLSLEGLGRFEQMTLRGWEDTFRARGYPSLGRVVA---PPPPRLFSRAELRAFDGRPADVAASEHGETERGAGAGGGEREVGGGEPGEQAAVLARQEEQPAESLPPEQEAKATANAVYFSNYAAQPIYMGVKDKVFDVSFGGSEFYLEGGPYECLAGRDASRVLAKMSMASEDIEGVLDYSCLTDREEKNLADWVEKLGEGGKGY 320
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A7S1ZS28_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZS28_TRICV) HSP 1 Score: 183 bits (465), Expect = 4.530e-50 Identity = 106/248 (42.74%), Postives = 146/248 (58.87%), Query Frame = 1
Query: 991 LRNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGW-EDIFVARGYPVVGRVV-AIATPTPPRLFSREELRLFDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLED-KGYPVVGRI 1725
L NFT +QL FDGG + ++ G +P+Y++++G+VYD S GRHLYGP G + AG + +ARG S D DLD++S + LS E+ L GW E + + YPV+GR++ A P+ R+ S+EEL +DG+ + P GYA IY+ KV+D+SFGG Y +GGAY C AG+DASR LA+MS+ P D E S L+ KE+K L DW K E+ K YP VGR+
Sbjct: 16 LNNFTSVQLLHFDGGEDSVGKKKG------EKPVYLSVKGVVYDASKGRHLYGPGGPFEVYAGRECGAALARG-----SLDQSDLDNISCDDLSMNEQTELEGWVERLKSSLCYPVLGRLIPGDALPSEDRVVSKEELAQYDGKIQDI--------PEGYAAAPIYLAAKGKVYDMSFGGVSFYGKGGAYNCFAGKDASRALAKMSLDPADTENT-STSDLSEKEIKVLNDWVKTFEERKKYPCVGRL 243
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A7S0CLZ8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CLZ8_9STRA) HSP 1 Score: 168 bits (425), Expect = 8.600e-44 Identity = 106/249 (42.57%), Postives = 142/249 (57.03%), Query Frame = 1
Query: 994 RNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLS-LEGLSRFEKMTLSGWEDIFVA-RGYPVVGRVVAIATPTPP-RLFSREELRLFDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLED-KGYPVVGRIA 1728
RN+T QL F+G I+K R T+ +Y++L G V+D + G++ YGP G Y AGH+ A+ S D+D LDD+ E L+ EK L GW + F R YPV G ++ +P R+ S+EE+ DG +P GYA+ IY+GV ++VFDVSFGG E Y +GGAY+ AG+DASR LA+MS P D D S L+ KELK L DW K ++ KGYPVVG+IA
Sbjct: 63 RNYTEAQLLKFNGSIDKTG------RFEVTQQVYLSLNGTVFDVTEGKNFYGPGGPYELFAGHECGVAFAK-----MSFDNDHLDDMDGCEKLTNSEKHELIGWMEKFTYYRAYPVKGSLIPNNKLSPSDRILSKEEIAKHDGNGT---------VPEGYAVAPIYIGVGERVFDVSFGGVEFYGKGGAYERFAGKDASRALAKMSFDPADTANT-DTSDLSEKELKVLNDWVKTFDERKGYPVVGKIA 290
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: D7FY31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY31_ECTSI) HSP 1 Score: 163 bits (413), Expect = 2.620e-42 Identity = 112/273 (41.03%), Postives = 142/273 (52.01%), Query Frame = 1
Query: 925 LFMPPSECKRPDGAGVGDLASGLRNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIFVARG-YPVVGRVVAIATPTPPRLFSREELRLFDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLEDKGYPVVGRIALCSP 1740
+F P D D RNFTI QL+ FDG E P Y+ALRG V+D S+ Y G Y AGHD S +A G S D DL+ S L+ E +L GW + + YPVVG+VV P PR FS EELR FDG +P GYA P IYVGV KV+D+S+GGAE+Y G +Y AGRDAS LA+MS +PE ++ D S L+ +++ L DWA ++E K YPV+G IA +P
Sbjct: 33 MFQPARAPATDDDESAADRPPPPRNFTIEQLHEFDGRDE-------------ATPAYVALRGEVFDVSSKPEHYKVGGGYHLFAGHDASYSLATG-----SLDPADLEK-SWSELNVMENESLDGWVEKYKNFSEYPVVGKVVT--PPAQPREFSLEELRPFDGTSD---------IPEGYAAPPIYVGVRGKVYDMSYGGAEMYGPGKSYNLFAGRDASVALAKMSFAPEHLDNP-DMSTLSKEDMTVLQDWASKMEKK-YPVIGTIANSAP 273
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A7S4NEZ3_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NEZ3_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.700e-41 Identity = 104/245 (42.45%), Postives = 132/245 (53.88%), Query Frame = 1
Query: 994 RNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIF-VARGYPVVGRVVAIAT-PTPPRLFSREELRLFDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRL-EDKGYPVVG 1719
RNFT +QL FDG ++ + G+ +P+Y+A++GIV+D S+GR YGP G Y +GH+ +A+ S D+ +DD S E L+ EK L GW + F R YPV GR+V + P + S EEL DG +P GYA IYV KVFDVSFGG Y + GAY AG DASR LA+MS P D+E + LT KE K L DW K E K YPVVG
Sbjct: 56 RNFTAMQLKHFDGTKDE--------KTGEDKPVYLAVKGIVFDVSSGRDFYGPGGAYEMFSGHECGVALAK-----MSFDEKYIDDFSWESLNFGEKTELDGWIEKFQYYRSYPVKGRLVPEKSIPPSDKTVSTEELAKNDG---------SMEIPEGYAAAPIYVAAGGKVFDVSFGGVTFYGKDGAYSSFAGVDASRALAKMSFDPSDIENPT-INDLTEKEKKCLDDWIKTFGERKQYPVVG 277
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A836CD55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD55_9STRA) HSP 1 Score: 159 bits (401), Expect = 1.980e-41 Identity = 93/208 (44.71%), Postives = 123/208 (59.13%), Query Frame = 1
Query: 1096 IALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIFVARGYPVVGRVVAIATPTPPRLFSREELRLFDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLEDKGYPVVG 1719
+ ++G V+D S+ +YG G Y L HD S +A G S D DLD L L+ ++ TLSGW ++ A+G V+GR+V TP PP+ F R ELR F+GR+ V P GYA+P +Y+ VFDVSFGG ++Y G Y CL G DAS VLARMSM+ D++G LD + L+ KE +NL W +L KGYPVVG
Sbjct: 11 LCMQGYVFDVSSDPGVYGEGGRYHFLTRHDASYCLATG-----SCDAADLDREDLSCLTPQQQRTLSGWVEMLQAKGCAVLGRLVR--TP-PPKPFQRHELRHFNGRQSQV--------PAGYAIPPMYMACNGVVFDVSFGGLDMYDVGCPYACLVGNDASCVLARMSMTQADIDGTLDMANLSEKEQRNLTAWEAKLRQKGYPVVG 202
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A7S3Y4U5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4U5_HETAK) HSP 1 Score: 158 bits (399), Expect = 3.220e-40 Identity = 102/244 (41.80%), Postives = 131/244 (53.69%), Query Frame = 1
Query: 994 RNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIFVA-RGYPVVGRVVAIATPTPPRLFSREELRLFDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLED-KGYPVVG 1719
RNFT QL +DG E E PIY+ALRG+V+D S+ YG +G Y+ AGHD +R +A+ S ++DDL+ S EG S E +L GW F + YP+VGRVV P PR SREEL+ G++ P GYA I + V V+DVSFGG Y EG AY AG+DASR LA+MS EDV + L+ KELK L DW ++ K YP++G
Sbjct: 65 RNFTFEQLKKYDGSEEDE-------------PIYVALRGVVFDVSSAPTHYGKDGAYNLFAGHDATRNLAK-----MSFEEDDLNKPSTEGFSVSEIDSLDGWYTTFKEYKQYPIVGRVVE---PPKPRKISREELQEMRGKQT---------CPEGYATAPICISVKGNVYDVSFGGVTFYMEGAAYHLFAGKDASRALAKMSFKDEDVNST-ELKDLSEKELKVLDDWENTFKNRKKYPIIG 277
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A836C9I0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I0_9STRA) HSP 1 Score: 154 bits (390), Expect = 6.370e-39 Identity = 103/249 (41.37%), Postives = 132/249 (53.01%), Query Frame = 1
Query: 991 LRNFTILQLNFFDGGIEKEVERGGMVRAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIFVA-RGYPVVGRVVAIATPTPPRLFSREELRLFDGRRVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLEDKGYPVVGRIALC 1734
LRNFT+ QL F G K + + PIY+ALRG V+D S RH YG G Y AGHD S +AR S D DL+ ++ E LS E+ TL GW F +GYP+VGRVV P P ++++E+L G EG +P G A + V V KVFDVS+GGA Y +G Y GRDASR LA+MS E+++ + L+ E+ + DWA R E KGY VVG C
Sbjct: 60 LRNFTLEQLKAFTGVNAKGEDDEDV-------PIYVALRGEVFDVSQARHAYGKEGNYHIFAGHDASVSLAR-----HSLDASDLNKMTWEELSHGERDTLDGWIQQFRDYKGYPMVGRVVTAPLPDPLPVYTKEQLAAGTG-------EGP--IPDGAAAAPMLVAVAGKVFDVSYGGAPHYGKGCPYNLFVGRDASRALAKMSFDAENLDNP-SIADLSLAEVGVMNDWAARFEKKGYRVVGTYPTC 286
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Match: A0A7S2R2U9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2U9_9STRA) HSP 1 Score: 139 bits (350), Expect = 4.930e-33 Identity = 92/273 (33.70%), Postives = 144/273 (52.75%), Query Frame = 1
Query: 976 DLASGL----RNFTILQLNFFDGGIEKEVERGGMV--RAGKTRPIYIALRGIVYDTSAGRHLYGPNGEYSELAGHDVSRRVARGLRQGSSRDDDDLDDLSLEGLSRFEKMTLSGWEDIFV-ARGYPVVGRVVAIAT-PTPPRLFSREELRLFDGR--------------RVPVGLEGGFLLPTGYALPSIYVGVMDKVFDVSFGGAELYSEGGAYKCLAGRDASRVLARMSMSPEDVEGFLDYSRLTSKELKNLADWAKRLEDKG-YPVVGRI 1725
+L+S L RNFT QL ++DG +++ + + ++ + +P+Y++L+GIV+D S + YGP G Y AG + +A+ +S D+ +D SL L+ E+ L+ W F R YP++GR+V+ + P P RL ++++L DG G ++P GY IY+GV VFDVSFGG E Y +G Y AG+D SR LA+MS+ +++ + L KE K L DW +DK YP+VG++
Sbjct: 49 ELSSSLFISKRNFTSEQLAYYDGTVDETIPKRKVLVKESDNKKPVYLSLKGIVFDVSEATNFYGPGGPYESFAGRECGMALAKRNMYDASLLDEAVDS-SL--LNEKERTQLAEWIHKFQKVRCYPIMGRLVSSSQLPDPDRLLTKDDLLANDGTIHXXXXXXXXXXXXXXXXXXXGDVVIPEGYGTVPIYLGVDGTVFDVSFGGLEYYGKGCPYHPFAGKDVSRALAKMSLDVAEIDNCAVHD-LNEKECKTLKDWKTSFQDKRKYPIVGQL 317 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1696.4315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1696.4315.1 >prot_H-elongata_contig1696.4315.1 ID=prot_H-elongata_contig1696.4315.1|Name=mRNA_H-elongata_contig1696.4315.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=569bp MPKSSTSIEKEIISVACRISWAVMRATYARVVRTVRTGIEHMLGSAVEIAback to top mRNA from alignment at H-elongata_contig1696:429..2846+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1696.4315.1 ID=mRNA_H-elongata_contig1696.4315.1|Name=mRNA_H-elongata_contig1696.4315.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2418bp|location=Sequence derived from alignment at H-elongata_contig1696:429..2846+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1696:429..2846+ >mRNA_H-elongata_contig1696.4315.1 ID=mRNA_H-elongata_contig1696.4315.1|Name=mRNA_H-elongata_contig1696.4315.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3414bp|location=Sequence derived from alignment at H-elongata_contig1696:429..2846+ (Himanthalia elongata Himel1 dioecious)back to top |