mRNA_H-elongata_contig169530.4312.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169530.4312.1
Unique NamemRNA_H-elongata_contig169530.4312.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig169530.4312.1 vs. uniprot
Match: D8LGQ4_ECTSI (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGQ4_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.870e-50
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCEQPIDKIQ 255
            QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYC+QP DKIQ
Sbjct:  165 QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPADKIQ 249
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BLAST of mRNA_H-elongata_contig169530.4312.1 vs. uniprot
Match: A0A7S0G7S0_9STRA (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G7S0_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.180e-47
Identity = 76/85 (89.41%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:    1 QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCEQPIDKIQ 255
            QYVPCDVSTVCFG AASMGAFLLGAGAKGKRRSLPNAR+MIHQPLGGAQGQAADIEIQAKEILFIR +LN+Y+AEYC+QP DKI+
Sbjct:   79 QYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRSLPNARVMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIE 163
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BLAST of mRNA_H-elongata_contig169530.4312.1 vs. uniprot
Match: A0A835YSZ8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ8_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.840e-47
Identity = 80/85 (94.12%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:    1 QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCEQPIDKIQ 255
            QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSY+A+Y  QPI+KIQ
Sbjct:  163 QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYIADYTGQPIEKIQ 247
[Close]
BLAST of mRNA_H-elongata_contig169530.4312.1 vs. uniprot
Match: B8CGM1_THAPS (ATP-dependent Clp protease proteolytic subunit n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8CGM1_THAPS)

HSP 1 Score: 155 bits (393), Expect = 1.810e-46
Identity = 75/85 (88.24%), Postives = 81/85 (95.29%), Query Frame = 1 
Query:    1 QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCEQPIDKIQ 255
            QYVPCDVSTVCFG AASMGAFLLGAGA GKRR+LPNARIMIHQPLGGAQGQAADIEIQAKEILFIR +LN+Y+AEYC+QP DKI+
Sbjct:   75 QYVPCDVSTVCFGMAASMGAFLLGAGAPGKRRALPNARIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIE 159
[Close]
BLAST of mRNA_H-elongata_contig169530.4312.1 vs. uniprot
Match: A0A7S4EKY3_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A7S4EKY3_9STRA)

HSP 1 Score: 157 bits (396), Expect = 4.780e-46
Identity = 75/85 (88.24%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:    1 QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCEQPIDKIQ 255
            QYVPCDVSTVCFG AASMGAFLLGAGAKGKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILFIR +LN+Y+AEYC+QP DKI+
Sbjct:  146 QYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIE 230
[Close]
BLAST of mRNA_H-elongata_contig169530.4312.1 vs. uniprot
Match: W7TMY3_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMY3_9STRA)

HSP 1 Score: 157 bits (397), Expect = 5.030e-46
Identity = 77/85 (90.59%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:    1 QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCEQPIDKIQ 255
            Q+VPCDV+TVCFG AASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILF+RSLLNSY++EY  QPIDKIQ
Sbjct:  159 QFVPCDVATVCFGMAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVRSLLNSYISEYTGQPIDKIQ 243
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BLAST of mRNA_H-elongata_contig169530.4312.1 vs. uniprot
Match: A0A7S2XR52_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XR52_9STRA)

HSP 1 Score: 157 bits (396), Expect = 6.240e-46
Identity = 75/85 (88.24%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:    1 QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCEQPIDKIQ 255
            QYVPCDVSTVCFG AASMGAFLLGAGAKGKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILFIR +LN+Y+AEYC+QP DKI+
Sbjct:  156 QYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIE 240
[Close]
BLAST of mRNA_H-elongata_contig169530.4312.1 vs. uniprot
Match: A0A6U2ZXF5_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U2ZXF5_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.360e-45
Identity = 74/85 (87.06%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:    1 QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCEQPIDKIQ 255
            QYVPCDV+TVCFG AASMGAFLLGAGAKGKRR+LPN+RIMIHQPLGGAQGQAADIEIQAKEILFIR +LN+Y+AEYC+QP DKI+
Sbjct:  146 QYVPCDVNTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIE 230
[Close]
BLAST of mRNA_H-elongata_contig169530.4312.1 vs. uniprot
Match: A0A7S2Q591_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q591_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.440e-45
Identity = 74/85 (87.06%), Postives = 81/85 (95.29%), Query Frame = 1 
Query:    1 QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCEQPIDKIQ 255
            QY+PCDVSTVCFG AASMGAFLLGAGA GKRR+LPNARIMIHQPLGGAQGQAADIEIQAKEILFIR +LN+Y+AEYC+QP DKI+
Sbjct:  155 QYIPCDVSTVCFGMAASMGAFLLGAGAPGKRRALPNARIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYCDQPKDKIE 239
[Close]
BLAST of mRNA_H-elongata_contig169530.4312.1 vs. uniprot
Match: A0A7S2R2R8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2R8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 3.070e-45
Identity = 72/85 (84.71%), Postives = 80/85 (94.12%), Query Frame = 1 
Query:    1 QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCEQPIDKIQ 255
            QY+PCDVSTVCFG AASMGAFLLGAGA GKR++LPNARIMIHQPLGGAQGQAADIEIQAKEILFIR +LN+Y+AEY +QP DKI+
Sbjct:    7 QYIPCDVSTVCFGMAASMGAFLLGAGAPGKRKALPNARIMIHQPLGGAQGQAADIEIQAKEILFIREVLNTYIAEYTDQPKDKIE 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169530.4312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGQ4_ECTSI1.870e-5097.65ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A7S0G7S0_9STRA1.180e-4789.41ATP-dependent Clp protease proteolytic subunit (Fr... [more]
A0A835YSZ8_9STRA1.840e-4794.12ATP-dependent Clp protease proteolytic subunit n=1... [more]
B8CGM1_THAPS1.810e-4688.24ATP-dependent Clp protease proteolytic subunit n=3... [more]
A0A7S4EKY3_9STRA4.780e-4688.24ATP-dependent Clp protease proteolytic subunit n=2... [more]
W7TMY3_9STRA5.030e-4690.59ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A7S2XR52_9STRA6.240e-4688.24ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A6U2ZXF5_9STRA1.360e-4587.06ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2Q591_9STRA2.440e-4587.06ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2R2R8_9STRA3.070e-4584.71ATP-dependent Clp protease proteolytic subunit n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169530contigH-elongata_contig169530:582..1167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue4e-40
Seed eggNOG ortholog2880.D8LGQ4
Preferred nameCLPP4
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009368,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009840,GO:0009941,GO:0009987,GO:0016020,GO:0016043,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0040034,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048506,GO:0048509,GO:0048510,GO:0050789,GO:0050793,GO:0055035,GO:0065007,GO:0071840
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0740@1,KOG0840@2759
EC3.4.21.92
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.9573784-CDS-H-elongata_contig169530:581..6651622929988.9573784-CDS-H-elongata_contig169530:581..665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169530 582..665 +
1691679236.4837031-CDS-H-elongata_contig169530:581..6651691679236.4837031-CDS-H-elongata_contig169530:581..665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169530 582..665 +
1622929988.9807959-CDS-H-elongata_contig169530:996..11671622929988.9807959-CDS-H-elongata_contig169530:996..1167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169530 997..1167 +
1691679236.4959667-CDS-H-elongata_contig169530:996..11671691679236.4959667-CDS-H-elongata_contig169530:996..1167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169530 997..1167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169530.4312.1prot_H-elongata_contig169530.4312.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169530 582..1167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169530.4312.1

>prot_H-elongata_contig169530.4312.1 ID=prot_H-elongata_contig169530.4312.1|Name=mRNA_H-elongata_contig169530.4312.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
QYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQG
QAADIEIQAKEILFIRSLLNSYMAEYCEQPIDKIQ
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mRNA from alignment at H-elongata_contig169530:582..1167+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169530.4312.1 ID=mRNA_H-elongata_contig169530.4312.1|Name=mRNA_H-elongata_contig169530.4312.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=586bp|location=Sequence derived from alignment at H-elongata_contig169530:582..1167+ (Himanthalia elongata Himel1 dioecious)
CAGTACGTGCCCTGTGACGTGTCAACGGTTTGCTTTGGCACGGCGGCATC
GATGGGGGCATTTCTGCTAGGGGCAGGTGCCAAGGTGAGCATCCCCCCCC
GTCGCGTTCCTTTTATCCGCTCACGGAATCACGTATGGTGCCACTGCGGT
GACTATGTACGATTGTATGCATCAATCGTGGCGAGGTTGTAAATTGAGCT
AAAACGCTGCTATGTCGGCTTATGTTTGCTTGCCTACTCTGCGATGATTG
ACAAAAGTAGTGGGGATTTCTATGCATAGGCTATAAGCAAGACTATATAG
TTGTTTGTCCCCTGGTCGTAACGCCTCATTTTCCCTTTCTTTTCCATCTT
GGTGTTATGTGTTATATTTCTCTCTCTCTCTCTCTCTCTCTCCTCTTTTC
TTTGAAATAAATCAGGGAAAACGCCGATCTCTGCCGAACGCCCGCATCAT
GATCCACCAGCCCTTGGGAGGGGCGCAAGGACAGGCGGCGGACATTGAGA
TTCAGGCCAAAGAGATCCTGTTCATCCGTTCCTTGCTGAACTCCTATATG
GCGGAGTACTGCGAGCAACCGATCGACAAGATCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig169530:582..1167+

>mRNA_H-elongata_contig169530.4312.1 ID=mRNA_H-elongata_contig169530.4312.1|Name=mRNA_H-elongata_contig169530.4312.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig169530:582..1167+ (Himanthalia elongata Himel1 dioecious)
CAGTACGTGCCCTGTGACGTGTCAACGGTTTGCTTTGGCACGGCGGCATC
GATGGGGGCATTTCTGCTAGGGGCAGGTGCCAAGCAGTACGTGCCCTGTG
ACGTGTCAACGGTTTGCTTTGGCACGGCGGCATCGATGGGGGCATTTCTG
CTAGGGGCAGGTGCCAAGGGAAAACGCCGATCTCTGCCGAACGCCCGCAT
CATGATCCACCAGCCCTTGGGAGGGGCGCAAGGACAGGCGGCGGACATTG
AGATTCAGGCCAAAGAGATCCTGTTCATCCGTTCCTTGCTGAACTCCTAT
ATGGCGGAGTACTGCGAGCAACCGATCGACAAGATCCAGGGAAAACGCCG
ATCTCTGCCGAACGCCCGCATCATGATCCACCAGCCCTTGGGAGGGGCGC
AAGGACAGGCGGCGGACATTGAGATTCAGGCCAAAGAGATCCTGTTCATC
CGTTCCTTGCTGAACTCCTATATGGCGGAGTACTGCGAGCAACCGATCGA
CAAGATCCAG
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